BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01920.1
Length=3489
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939468 jgi|Araly1|939468|scaffold_600012.1 2362 0.0
Ahg349416 jgi|Araly1|349416|fgenesh1_pg.C_scaffold_6000009 752 0.0
> Ahg939468 jgi|Araly1|939468|scaffold_600012.1
Length=1527
Score = 2362 bits (1279), Expect = 0.0
Identities = 1446/1525 (95%), Gaps = 18/1525 (1%)
Strand=Plus/Plus
Query 41 AGATAAGATGGCCTCTCTTCTCTCTCCCGCCA---CC-C--CCACCGCCACCTCCGCCGC 94
|||||||||||||||||||||||||||||||| || | |||||||||||||||||||
Sbjct 14 AGATAAGATGGCCTCTCTTCTCTCTCCCGCCACGGCCACGGCCACCGCCACCTCCGCCGC 73
Query 95 ATTTCATTCCTGCTCCACCGCCGGATTCTCCACTCCCACTCACATTTCATCCCAGAACAG 154
||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 74 TTTTCATTCCTGCTCCACCGCCGGTTTCCCCACTCCCACTCACATTTCATCCCAGAACAG 133
Query 155 CAGCCTGTCCCTCCTCAGCCGCCGGGGTTGTATGATGAGATGCAGTTTTTCTCCGCAGGA 214
||||| | || || | | || ||||||||||||||||||||||||||||||
Sbjct 134 CAGCC-G-CCGGGCTTA---TTC----TTATATGATGAGATGCAGTTTTTCTCCGCAGGA 184
Query 215 CATT-CCTGTTGATTCCCTCTCTCATCTCCCTCCTTTCCTTGACTTTCAGAACTCCCTCG 273
| || ||||||| || ||||||||||||||| |||||| |||||||||||| |||||||
Sbjct 185 C-TTATCTGTTGAGTCTCTCTCTCATCTCCCTGCTTTCCATGACTTTCAGAATTCCCTCG 243
Query 274 CCACATTTTCGGATACCCAGAAATGGGGGTTCTTTGTCTCCGCCGGAATCGTCTGGTTTT 333
||||||||||| ||||||||||||||| ||||||| || |||||||| ||||||||||||
Sbjct 244 CCACATTTTCGAATACCCAGAAATGGGAGTTCTTTTTCCCCGCCGGACTCGTCTGGTTTT 303
Query 334 ACCTCACGGCGAGGCCTGGTGTTCTCATCGGCGCCATTGACGCCTACCTTCTCGCTCCCC 393
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 304 ACCTCACGGCGAGGCCTGGTGTTCTCATCGGCGCCATTGACGCCTACCTTCTCGCTCCGC 363
Query 394 TCCAGCTTGGCCTCGACACTCTGATTGGAAGGAGGTTGAAGAGGTCCGATTTCTTGGTCA 453
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 364 TCCAGCTTGGCCTCGACACTCTGATTGGTAGGAGGTTGAAGAGGTCCGATTTCTTGGTCA 423
Query 454 CTGAGAAACTCGGCGAAGGCTCTTTCGGCGTCGTCTATGCCGGCGTCCTACTCCCCAAGA 513
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 CGGAGAAACTCGGCGAAGGCTCTTTCGGCGTCGTCTATGCCGGCGTCCTACTCCCCAAGA 483
Query 514 ATTCTACTCTTGTTGATGACGTTAGGGTTAGCAAAGCAAGAGCTAAAGCGATGGACTTTA 573
|||||||| |||||||||| | |||| |||||||||||||||||||||| ||||| ||||
Sbjct 484 ATTCTACTGTTGTTGATGAGGCTAGGCTTAGCAAAGCAAGAGCTAAAGCTATGGAATTTA 543
Query 574 CCGGCGAATTCAAGCAGAGAGTCATCCTCAAGAAGGTCAAGGTGGGAGTACGAGGGGCCG 633
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 544 CCGGCGAATTCAAGCAGAGAGTCATCCTCAAGAAGGTCAAGGTGGGAGTACGAGGGGCTG 603
Query 634 AGGAATTTGGCGAGTACGAAGAGTGGTTCAACTACCGACTCTCAAGGGCCGCTCCTGACA 693
||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 604 AGGAATTCGGCGAGTTCGAAGAGTGGTTCAACTACAGACTCTCAAGGGCCGCTCCTGAGA 663
Query 694 CCTGCGCTGAGTTTCTCGGAAGCTTTGTCGCCGACAAGACCAATACTATGTTTACTAAAG 753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 CCTGCGCTGAGTTTCTCGGAAGCTTTGTCGCCGACAAGACCAATACTATGTTTACTAAAG 723
Query 754 GCGGCAAATGGCTTGTCTGGAGGTTCGAGGGAGACCGTGATCTCGCTGATTACATGAAAG 813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 724 GCGGCAAATGGCTTGTCTGGAGGTTCGAGGGAGACCGTGATCTCGCTGATTACATGAAAG 783
Query 814 ATCGGAGCTTTCCTTCTAATTTGGAGTCCATCATGTTTGGGCGCGTTCTCCAAGGAGTCG 873
|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 784 ATCGGAGCTTTCCTTCCAATCTGGAGTCCATCATGTTTGGGCGCGTTCTCCAAGGAGTAG 843
Query 874 AGTCTGTGAAACGTCGTGCACTGATCATTAAGCAGATTATGCGCCAGATCATTACATCTC 933
||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 844 AGTCTGTGAAAAGTCGTGCATTGATCATTAAGCAGATCATGCGCCAGATCATTACATCTC 903
Query 934 TCAGGAAAATCCATGGCACGGGCATTGTTCACCGGGACGTGAAGCCTGCCAACTTGGTGG 993
||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 904 TCAAGAAAATCCATGATACGGGCATTGTTCACCGGGACGTGAAGCCTGCCAACTTGGTGG 963
Query 994 TTACAAAGAAGGGCCAGATTAAGCTCATCGACTTTGGTGCCGCTGCTGATCTTCGCATTG 1053
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 964 TTACAAAGAAGGGCCAGATTAAGCTCATCGACTTTGGTGCTGCTGCTGATCTTCGCATTG 1023
Query 1054 GCAAGAATTACATCCCGGAACGCACTTTACTCGATCCTGACTACTGTCCTCCTGAGCTCT 1113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1024 GCAAGAATTACATCCCGGAACGCACTTTACTCGATCCTGACTACTGTCCTCCTGAGCTCT 1083
Query 1114 ATGTCCTCCCGGAGGAAACGCCAAGCCCTCCTCCGGAGCCTATAGCCGCTTTGCTTTCCC 1173
|||||||||| |||||||||||||| |||||||| |||||||| ||||||||||||||||
Sbjct 1084 ATGTCCTCCCTGAGGAAACGCCAAGTCCTCCTCCCGAGCCTATTGCCGCTTTGCTTTCCC 1143
Query 1174 CGATTCTCTGGCAGTTGAACAGTCCGGATCTGTTTGATATGTATTCTGCTGGGATAGTGC 1233
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1144 CGATTCTCTGGCAGTTGAACAGTCCGGATCTGTTTGATATGTATTCTGCTGGGATTGTGC 1203
Query 1234 TTCTCCAAATGGCGGTTCCGACCTTAAGATCTACTGCCGGTCTGAAGAATTTTAATCTGG 1293
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1204 TCCTGCAAATGGCGGTTCCGACCTTAAGATCTACTGCCGGTCTGAAGAATTTTAATCTGG 1263
Query 1294 AGATCAAGTCTGTTGAATATGATCTTAATAGGTGGCGGGAAAGGACTCGGACGAGGCCAG 1353
|||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1264 AGATCAAGTCAGTTGAATATGATCTTAATAGATGGCGGGACAGGACTCGGACGAGGCCAG 1323
Query 1354 ACTTGAGCATACTAGATCTGGACTCGGGCAGAGGGTGGGACCTCGTCACTAAACTCATAT 1413
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1324 ACTTGAGCATACTAGATCTGGACTCGGGCAGAGGGTGGGACCTCGTCACTAAACTCGTAT 1383
Query 1414 CCGAGAGAGGTTCTCTGAGACGTGGACGCCTTTCAGCAGCTGCTGCTCTCAGACACCCTT 1473
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1384 CCGAGAGAGGTTCTCTGAGACGTGGGCGCCTTTCAGCAGCTGCTGCTCTCAGACACCCTT 1443
Query 1474 ATTTTTTGTTGGGCGGTGATCAAGCGGCCGCTGTTCTTTCAAAGCTCAGTTTCAGCAAGT 1533
|||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1444 ATTTTTTGCTGGGTGGTGATCAAGCGGCCGCTGTTCTTTCAAAGCTCACTTTCAGCAAGT 1503
Query 1534 GACTCTGATTTAAATTCTTATGATG 1558
||||||||||| | |||||||||||
Sbjct 1504 GACTCTGATTTTA-TTCTTATGATG 1527
> Ahg349416 jgi|Araly1|349416|fgenesh1_pg.C_scaffold_6000009
Length=1347
Score = 752 bits (407), Expect = 0.0
Identities = 429/440 (98%), Gaps = 0/440 (0%)
Strand=Plus/Minus
Query 1774 TTAAAGCTCGTCGTGCGAGAGGAGGGCATCAAGAGCAGTCTGATTCTTTTTCTTGCATCC 1833
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1347 TTAAAGCTCGTCGTGCGTCAGGAGGGCATCAAGAGCAGTGTGATTCTTTTTCTTGCATCC 1288
Query 1834 CCATCTGCATCTCCAGCTACACAAGGAGTTGAAGATGGCTAGTCGCTTTGACTGCAGAGA 1893
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1287 CCACCTGCATCTCCAGCTACACAAGGAGTTGAAGATGGCTAGTCGCTTCGACTGCAGAGA 1228
Query 1894 TATGATTTTTGAAGCTGTGTGAGCTCTTGTGAGGTAAACCGCATAGCCGTCATCCATGAA 1953
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1227 TATGATTTTTGAAGCGGTGTGAGCTCTTGTGAGGTAAACCGCATAGCCGTCATCCATGAA 1168
Query 1954 CTCTGCCCCCTGAGGGAAGACCTGCCAGACCAGACTCCCGGCACCAGCCCCTCCTTTCCT 2013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1167 CTCTGCCCCCTGAGGGAAGACCTGCCAGACCAGACTCCCGGCACCAGCCCCTCCTTTCCT 1108
Query 2014 TGTTGAGTTGAGGGTCATCTTGTACACTGTGTTCAACATCATGTCACGGAAAGACGTGTT 2073
||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||
Sbjct 1107 TGTTGAGTTGAGGGTCATCTTGTACACCGTATTCAACATCATGTCGCGGAAAGACGTGTT 1048
Query 2074 GAAACCAGGGTCATGTGCAGACACACCAAACTCTGTGAACAGAACCGGCATTCCCAAGTA 2133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1047 GAAACCAGGGTCATGTGCAGACACACCAAACTCTGTGAACAGAACCGGCATTCCCAAGTA 988
Query 2134 CATCTCTGCGTCCTCAACATGAGCTTGCATCCAAGAGCTTGTGAATTCCAGGAAAGAATT 2193
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 987 CATCTCTGCGTCCTCCACATGAGCTTGCATCCAAGAGCTAGTGAATTCCAGGAAAGAATT 928
Query 2194 TGATACTGCCGGAGATATCC 2213
||||||||||||||||||||
Sbjct 927 TGATACTGCCGGAGATATCC 908
Score = 556 bits (301), Expect = 3e-157
Identities = 328/341 (96%), Gaps = 1/341 (0%)
Strand=Plus/Minus
Query 2307 ATA-CCAGGAATCTGGATAGACGTGAACCGAGGCAAAATCAATGCCAAGAACCTGATTAT 2365
||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 913 ATATCCAGGAATCTGGATAGACGTGAACCGAAGCAAAATCGATGCCAAGAACCTGATTAT 854
Query 2366 TTCTGATGAAGTCAGTTCCGACTTGTGCAGCGTAGGGGTTGGGGTTGAATCTGGTTCTCG 2425
||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 853 TTCTGATGAAGTCAGTTCCGACTTGTGCAGCGTAGGGATTGGGATTGAATCTGGTTCTCA 794
Query 2426 CAGGGGCAGAGGGACCATAGAAGCCTTCAAGTCCGATCTCCACCAAGTGTTTAGCGTCTA 2485
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 793 CAGGGGCAGAGGGACCATAGAAGCCTTCAAGTCCGATCTCCACCAAATGTTTAGCGTCTA 734
Query 2486 AGCTCTTCACAAACACCGCCATTTCTTGTATCCAAGACTGGAGTTTGTCGCCGGAAGGAT 2545
||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||
Sbjct 733 AGCTCTTCACAAACACCGCCATTTCTTGTATCCAAGACTGGAGTTTGTCACCAGAGGGAT 674
Query 2546 CAGAGGGGCAACGAGGCTCATTCATAAGTTCCCAGGCGAAGATTGTGGGGTCGTTCTTGT 2605
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 673 CAGAGGGGCAACGAGGCTCATTCATGAGTTCCCAGGCGAAGATGGTGGGGTCGTTCTTGT 614
Query 2606 AAGTTATGTTTGTGAAGGTGTTCACTCTATTCAGCACTGTC 2646
|||||||||||||||||||||| ||||||||||||||||||
Sbjct 613 AAGTTATGTTTGTGAAGGTGTTGACTCTATTCAGCACTGTC 573
Score = 477 bits (258), Expect = 2e-133
Identities = 272/279 (97%), Gaps = 0/279 (0%)
Strand=Plus/Minus
Query 2997 CCTTGAAGACCTCTTCATCGTAAACAGAGGGAGATTTCTGGAGAGCTCTCCATTGGCCAT 3056
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 379 CCTTGAAGACCTCTTCATCGTAAACAGAGGGAGATTTCTGGAGAGCTCTCCATTGGCCGT 320
Query 3057 CGTTGAAAGCCCATGTCCTGCCTACCGTCATTCCAACCGCAGAGGCTTGTTGGAACACTT 3116
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 319 CGTTGAAAGCCCATGTCCTGCCTACTGTCATTCCAACCGCGGAGGCTTGTTGGAACACTT 260
Query 3117 CCGTCACTTTGCCTCTCGTGGAATTGTCAGCTGCAAGAGTCATCATCCAGTATGTGTTGA 3176
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 259 CCGTCACTTTGCCTCTCGTGGAATTGTCAGCTGCAAGAGTCATCATCCAGTACGTGTTGA 200
Query 3177 AGCCATTCACATAGAATGGTTGTCCATTTAGAGTGAATTGCATCCCTTTCCTCTGCACCA 3236
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 199 AGCCATTCACATAGAATGGTTGTCCATTTAGGGTGAATTGCATCCCTTTCCTCTGCACCA 140
Query 3237 TCTCCCATTGTTCTTCTCCTACCGATTCTGAGTTAACCC 3275
||||||||| |||||||||||| ||||||||||||||||
Sbjct 139 TCTCCCATTCTTCTTCTCCTACTGATTCTGAGTTAACCC 101
Score = 337 bits (182), Expect = 4e-91
Identities = 192/197 (97%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 2731 CCGGACATGGGATTGGTAGAAGTTTCTGAGGGTGGGGTTGGTGAAGAAGTCGTCATCGGA 2790
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 573 CCGGACATGGGATTGGTAGAAGTTTCTGAGGGTGGGGTTGGTGAAGAAGTCGTCGTCGGA 514
Query 2791 AGTGAGATTAAGGCCGGAGGCGTTTCCCCATTTAACGTACTGAGCTTTGCCGCCATAGGC 2850
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 513 GGTGAGATTAAGGCCGGAGGCGTTGCCCCATTTAACGTACTGAGCTTTGCCGCCATAGGC 454
Query 2851 GTCCCAGTTGTTGACCAATGACAGTATAAGCCTGATTTTGTACTTTCTGGCCTCGCTCAG 2910
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 453 GTCCCAGTTGTTGACCAATGACAGTATAAGCCTGATCTTGTACTTTCTGGCCTCGCTCAC 394
Query 2911 CACGAAGTCGAGGGCCT 2927
|||||||||||||||||
Sbjct 393 CACGAAGTCGAGGGCCT 377
Score = 165 bits (89), Expect = 2e-39
Identities = 95/98 (97%), Gaps = 0/98 (0%)
Strand=Plus/Minus
Query 3355 TGGGACTCGCTGTCCAAGTCTGCGAGAGCTCTGTTTTGAGTCAGAATTATGAAAACCGCA 3414
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 98 TGGGACTCGCTGTCCAAGTCTGCGAGAGCTCTGTTTTGTGTCAGAATTATGAAAATCGCA 39
Query 3415 GAACAGAGCACAATTCTGAATCCAAGTTGGTCCTTCAT 3452
||||||||||| ||||||||||||||||||||||||||
Sbjct 38 GAACAGAGCACGATTCTGAATCCAAGTTGGTCCTTCAT 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 131755317726
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5