BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01930.1
Length=1489
Score E
Sequences producing significant alignments: (Bits) Value
Ahg349416 jgi|Araly1|349416|fgenesh1_pg.C_scaffold_6000009 2266 0.0
> Ahg349416 jgi|Araly1|349416|fgenesh1_pg.C_scaffold_6000009
Length=1347
Score = 2266 bits (1227), Expect = 0.0
Identities = 1307/1347 (97%), Gaps = 0/1347 (0%)
Strand=Plus/Plus
Query 35 ATGAAGGACCAACTTGGATTCAGAATTGTGCTCTGTTCTGCGGTTTTCATAATTCTGACT 94
|||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 1 ATGAAGGACCAACTTGGATTCAGAATCGTGCTCTGTTCTGCGATTTTCATAATTCTGACA 60
Query 95 CAAAACAGAGCTCTCGCAGACTTGGACAGCGAGTCCCATGAGGTTAACTCAGAATCGGTA 154
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||
Sbjct 61 CAAAACAGAGCTCTCGCAGACTTGGACAGCGAGTCCCACGGGGTTAACTCAGAATCAGTA 120
Query 155 GGAGAAGAACAATGGGAGATGGTGCAGAGGAAAGGGATGCAATTCACTCTAAATGGACAA 214
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 121 GGAGAAGAAGAATGGGAGATGGTGCAGAGGAAAGGGATGCAATTCACCCTAAATGGACAA 180
Query 215 CCATTCTATGTGAATGGCTTCAACACATACTGGATGATGACTCTTGCAGCTGACAATTCC 274
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 CCATTCTATGTGAATGGCTTCAACACGTACTGGATGATGACTCTTGCAGCTGACAATTCC 240
Query 275 ACGAGAGGCAAAGTGACGGAAGTGTTCCAACAAGCCTCTGCGGTTGGAATGACGGTAGGC 334
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 241 ACGAGAGGCAAAGTGACGGAAGTGTTCCAACAAGCCTCCGCGGTTGGAATGACAGTAGGC 300
Query 335 AGGACATGGGCTTTCAACGATGGCCAATGGAGAGCTCTCCAGAAATCTCCCTCTGTTTAC 394
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGGACATGGGCTTTCAACGACGGCCAATGGAGAGCTCTCCAGAAATCTCCCTCTGTTTAC 360
Query 395 GATGAAGAGGTCTTCAAGGCCCTCGACTTCGTGCTGAGCGAGGCCAGAAAGTACAAAATC 454
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 361 GATGAAGAGGTCTTCAAGGCCCTCGACTTCGTGGTGAGCGAGGCCAGAAAGTACAAGATC 420
Query 455 AGGCTTATACTGTCATTGGTCAACAACTGGGACGCCTATGGCGGCAAAGCTCAGTACGTT 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AGGCTTATACTGTCATTGGTCAACAACTGGGACGCCTATGGCGGCAAAGCTCAGTACGTT 480
Query 515 AAATGGGGAAACGCCTCCGGCCTTAATCTCACTTCCGATGACGACTTCTTCACCAACCCC 574
|||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 481 AAATGGGGCAACGCCTCCGGCCTTAATCTCACCTCCGACGACGACTTCTTCACCAACCCC 540
Query 575 ACCCTCAGAAACTTCTACCAATCCCATGTCCGGACAGTGCTGAATAGAGTGAACACCTTC 634
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 541 ACCCTCAGAAACTTCTACCAATCCCATGTCCGGACAGTGCTGAATAGAGTCAACACCTTC 600
Query 635 ACAAACATAACTTACAAGAACGACCCCACAATCTTCGCCTGGGAACTTATGAATGAGCCT 694
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 601 ACAAACATAACTTACAAGAACGACCCCACCATCTTCGCCTGGGAACTCATGAATGAGCCT 660
Query 695 CGTTGCCCCTCTGATCCTTCCGGCGACAAACTCCAGTCTTGGATACAAGAAATGGCGGTG 754
||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||
Sbjct 661 CGTTGCCCCTCTGATCCCTCTGGTGACAAACTCCAGTCTTGGATACAAGAAATGGCGGTG 720
Query 755 TTTGTGAAGAGCTTAGACGCTAAACACTTGGTGGAGATCGGACTTGAAGGCTTCTATGGT 814
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 721 TTTGTGAAGAGCTTAGACGCTAAACATTTGGTGGAGATCGGACTTGAAGGCTTCTATGGT 780
Query 815 CCCTCTGCCCCTGCGAGAACCAGATTCAACCCCAACCCCTACGCTGCACAAGTCGGAACT 874
||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 781 CCCTCTGCCCCTGTGAGAACCAGATTCAATCCCAATCCCTACGCTGCACAAGTCGGAACT 840
Query 875 GACTTCATCAGAAATAATCAGGTTCTTGGCATTGATTTTGCCTCGGTTCACGTCTATCCA 934
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 841 GACTTCATCAGAAATAATCAGGTTCTTGGCATCGATTTTGCTTCGGTTCACGTCTATCCA 900
Query 935 GATTCCTGGATATCTCCGGCAGTATCAAATTCTTTCCTGGAATTCACAAGCTCTTGGATG 994
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 901 GATTCCTGGATATCTCCGGCAGTATCAAATTCTTTCCTGGAATTCACTAGCTCTTGGATG 960
Query 995 CAAGCTCATGTTGAGGACGCAGAGATGTACTTGGGAATGCCGGTTCTGTTCACAGAGTTT 1054
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 CAAGCTCATGTGGAGGACGCAGAGATGTACTTGGGAATGCCGGTTCTGTTCACAGAGTTT 1020
Query 1055 GGTGTGTCTGCACATGACCCTGGTTTCAACACGTCTTTCCGTGACATGATGTTGAACACA 1114
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1021 GGTGTGTCTGCACATGACCCTGGTTTCAACACGTCTTTCCGCGACATGATGTTGAATACG 1080
Query 1115 GTGTACAAGATGACCCTCAACTCAACAAGGAAAGGAGGGGCTGGTGCCGGGAGTCTGGTC 1174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 GTGTACAAGATGACCCTCAACTCAACAAGGAAAGGAGGGGCTGGTGCCGGGAGTCTGGTC 1140
Query 1175 TGGCAGGTCTTCCCTCAGGGGGCAGAGTTCATGGATGACGGCTATGCGGTTTACCTCACA 1234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 TGGCAGGTCTTCCCTCAGGGGGCAGAGTTCATGGATGACGGCTATGCGGTTTACCTCACA 1200
Query 1235 AGAGCTCACACAGCTTCAAAAATCATATCTCTGCAGTCAAAGCGACTAGCCATCTTCAAC 1294
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1201 AGAGCTCACACCGCTTCAAAAATCATATCTCTGCAGTCGAAGCGACTAGCCATCTTCAAC 1260
Query 1295 TCCTTGTGTAGCTGGAGATGCAGATGGGGATGCAAGAAAAAGAATCAGACTGCTCTTGAT 1354
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1261 TCCTTGTGTAGCTGGAGATGCAGGTGGGGATGCAAGAAAAAGAATCACACTGCTCTTGAT 1320
Query 1355 GCCCTCCTCTCGCACGACGAGCTTTAA 1381
|||||||| |||||||||||||||||
Sbjct 1321 GCCCTCCTGACGCACGACGAGCTTTAA 1347
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55726028435
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5