BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01940.1
Length=696
Score E
Sequences producing significant alignments: (Bits) Value
Ahg892013 jgi|Araly1|892013|Al_scaffold_0006_9 942 0.0
> Ahg892013 jgi|Araly1|892013|Al_scaffold_0006_9
Length=663
Score = 942 bits (510), Expect = 0.0
Identities = 617/668 (92%), Gaps = 9/668 (1%)
Strand=Plus/Plus
Query 1 ATGGATTTACAGCAAAAGCAGGCGTGTTGGAAACTTGAACTCGAGGTTATAGATAACGAT 60
||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||
Sbjct 1 ATGGATTTACAGCAAAAGCAGGCTTGTTGGAATGTTGAACTCGAGGTTTTAGATAACGAT 60
Query 61 TCTTCATGGGTCAGTAAATTTGATCCTTCTaagaagaagaagaagaagaagcagaagCCT 120
||||||||||||||||||||||||||||| ||||| |||||||||||| || |||||||
Sbjct 61 TCTTCATGGGTCAGTAAATTTGATCCTTCCAAGAATAAGAAGAAGAAG-AG--GAAGCCT 117
Query 121 CTGATACGCGAAGACGACATCTTCTTCCAGAATGGAGGACACTTTACGGAGGATAAC-TT 179
|||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||| |
Sbjct 118 CTGATACGCGAAGACGACATCTTCTTCCAGAAAGGAGGAGACTTTACCGAGGATAACGCT 177
Query 180 ACCGGACTGTCAATCTAGCCGGAAATTTGAGCCAGATTATGGCTACAAAGAGCTCTTGAG 239
|| ||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 178 -CCACACTGTCAATCTGGCCGGAACTTTGAGCCAGACTATGGCTACAAAGAGCTCTTGAG 236
Query 240 TATGGTGTTTGATAGGCTTCGTGAGGAAGATGTCGAGGTTTCTACAGAGAGGCCAAGAAC 299
|||||||||| ||||||||||||| |||||| |||||||||| |||||||||||||||||
Sbjct 237 TATGGTGTTTAATAGGCTTCGTGACGAAGATCTCGAGGTTTCAACAGAGAGGCCAAGAAC 296
Query 300 AGTGATGATGCCTCCTCAGCTCCTTGCAGAAGGGACGATAACTGTTTGTTTAAACTTTGC 359
||||||||||||||||| |||||||||| ||||||| ||||| ||||||||||||||||
Sbjct 297 AGTGATGATGCCTCCTCGGCTCCTTGCACAAGGGACTATAACACTTTGTTTAAACTTTGC 356
Query 360 TGATCTCTGCAGAACGATGCATAGGAAGCCAGATCATGTCATGAAATTCTTACTTGCCCA 419
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 TGATCTCTGCACAACGATGCATAGGAAGCCAGATCATGTCATGAAATTCTTACTTGCCCA 416
Query 420 AATGGAGACAAAAGTATCGCTGAACAAACAGCAGCGGCTAGAGATTAAGGGTTTAGTGTC 479
|||| ||||||||| ||||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct 417 AATGAAGACAAAAGGATCGCTGAATAAACAACAGCGGCTAGAGATGAAGGGTTTAGTGTC 476
Query 480 TTCTAAGGATTTTCAAGCTGTGTTCCGGAAATACATTGATGCGTTCGTAATCTGCGTCTG 539
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 477 TTCTAAGGTTTTTCAAGCTGTGTTCCGGAAATACATTGATGCGTTCGTAATCTGCATCTG 536
Query 540 CTGCAAAAGTCCTGACACAGCTCTCGCGGAGGAGGGCAATGGTCTTTTCAATCTCAGATG 599
||||||||||||||||||| |||| |||||||||| |||||||||||| |||||||||||
Sbjct 537 CTGCAAAAGTCCTGACACATCTCTTGCGGAGGAGGACAATGGTCTTTTTAATCTCAGATG 596
Query 600 TGAGACGGGGAAAGATGAG---GATAAATTGGTCTCATTTGAGTCTGTTCTTGTGCAGTG 656
||||| | ||| |||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 597 TGAGATGTATAAA-ATGACACTGATAAATTGGTCTCATTTGGGTCTGTTCTTGTGCAGTG 655
Query 657 TGGTTTAG 664
||||||||
Sbjct 656 TGGTTTAG 663
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25580477307
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5