BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01960.1
Length=1807
Score E
Sequences producing significant alignments: (Bits) Value
Ahg892011 jgi|Araly1|892011|Al_scaffold_0006_7 2008 0.0
Ahg486872 jgi|Araly1|486872|fgenesh2_kg.6__6__AT5G01970.1 89.8 6e-17
> Ahg892011 jgi|Araly1|892011|Al_scaffold_0006_7
Length=1290
Score = 2008 bits (1087), Expect = 0.0
Identities = 1230/1296 (95%), Gaps = 21/1296 (2%)
Strand=Plus/Plus
Query 333 ATGGAAACGCCCGGCGCCAGTCATGATTCATTTAGGGGTTCTCCTCGTAGAAACTCCATC 392
|||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGGAAACGCCCGGCGGCAATCATGATTCCTTTAGGGGTTCTCCTCGTAGAAACTCCATC 60
Query 393 CTCTCTGCTTCTAACATCATCCAGGCCCCTATTTCTACCTTGTTAGAGTATTCGGGTCTC 452
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 CTCTCTGCTTCTAACATCATCCAGGCCCCCATTTCTACCTTGTTAGAGTATTCGGGTCTC 120
Query 453 TTTCG-AGCTAGGCC-AAGTCCTAGTCATGAGGCTGAGACGCTTGTTAGTGATGATTCTT 510
||||| | ||||||| || ||||||||| |||||||| ||||| || |||||||||||||
Sbjct 121 TTTCGCA-CTAGGCCTAA-TCCTAGTCACGAGGCTGAAACGCTGGTCAGTGATGATTCTT 178
Query 511 CAGGACTCTCCAATGGGGAGGTTGCCATTAGGATCATTGGCAACACCGAGCAGGATGCTG 570
||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 179 CAGGAATCTCCAATGGGGAGGTTGCCATTAGGATCATTGGCAACGGGGAGCAGGATCCTG 238
Query 571 AAACTGATACCAATGCTCTGAGGGAA-----C--CC--GGACACTCTGAACTCTTGGGTT 621
||||||||| ||||| ||| |||||| | || |||||| ||||||| |||||||
Sbjct 239 AAACTGATAGCAATGGTCTCAGGGAACCCGGCGGCCTTGGACACACTGAACTTTTGGGTT 298
Query 622 CTTCTGCTACTCAGGTTGATCCCATGGGAGGTGCT--T-CAGAAGGTGCCTCTCAGGCTG 678
| || ||||||||||||||||||| ||||||||| | |||||||||||||||||| ||
Sbjct 299 C-TC--CTACTCAGGTTGATCCCATAGGAGGTGCTCCTGCAGAAGGTGCCTCTCAGGATG 355
Query 679 CTCCAGGTG-ATCCTGCTGCTGGAGACGCCGCTTCCCGGGATTCGCCTTACCAAAGATAT 737
|||| |||| || ||| |||||||||||||||| |||||||||| |||||||||||||||
Sbjct 356 CTCCTGGTGAAT-CTGTTGCTGGAGACGCCGCTACCCGGGATTCACCTTACCAAAGATAT 414
Query 738 GATATTCAGCAGGCTGCACGCTGGATTGAGCAAATTCTTCCCTTTTCTTTGCTTCTGTTG 797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 GATATTCAGCAGGCTGCACGCTGGATTGAGCAAATTCTTCCCTTTTCTTTGCTTCTGTTG 474
Query 798 GTTGTTTTTATCCGCCAGCATTTGCAGGGGTTCTTTGTCGCCATTTGGATTGCTGCTGTC 857
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 475 GTTGTTTTTATCCGTCAGCATTTGCAGGGGTTCTTTGTCGCTATTTGGATTGCTGCTGTC 534
Query 858 ATGTTCAAGTCAAATGATATTCTCAAGAAGCAAACAGCTTTGAAGGGTGAGAGGCATATC 917
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 535 ATGTTCAAGTCAAATGATATTCTCAAGAAGCAAACAGCTTTAAAGGGTGAGAGGCATATC 594
Query 918 TCGGCATTAATTGGAATCTCTGTAGCATTTACGGCCCATGTTGTTGGTGTTTATTGGTGG 977
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 TCTGCATTAATTGGAATCTCTGTAGCATTTACGGCCCATGTTGTTGGTGTTTATTGGTGG 654
Query 978 TTTCGGAAGGATGACCTCTTGTATCCCTTAATCATGCTGCCTCCAAAGTCCATACCACCT 1037
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 TTTAGGAAAGATGACCTCTTGTATCCCTTAATCATGCTGCCTCCAAAGTCCATACCACCT 714
Query 1038 TTCTGGCATGCCATTTTTATCATAGTGGTGAATGATACACTTGTCCGGCAGGCCTCAATG 1097
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 715 TTCTGGCATGCCATTTTTATCATAGTGGTTAATGATACACTTGTCCGACAGGCCTCAATG 774
Query 1098 ATTTTCAAGTGTTTTTTGTTGATGTACTACAAAAACAGTAGGGGTCGGAATTATCGTAAA 1157
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 775 ATTTTCAAGTGTTTTCTGTTGATGTACTACAAAAACAGTAGGGGTCGAAATTATCGTAAA 834
Query 1158 CAGGGTCAATTGCTAACTTTGGTTGAATATTTCATGCTTCTGTATCGCTCTTTACTGCCT 1217
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 835 CAGGGTCAATTGCTAACTTTGGTTGAATATTTGATGCTTTTGTATCGCTCTTTACTGCCT 894
Query 1218 ACCCCTGTATGGTACCGTTTCTTTTTGAACAAGGATTATGGAAGCCTCTTCTCCTCTCTT 1277
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 895 ACCCCTGTATGGTACCGTTTCTTCTTGAACAAGGATTATGGAAGCCTCTTCTCCTCTCTT 954
Query 1278 ATGACGGGATTGTATCTTACATTCAAGCTCACTTCAGTAGTTGAGAAGGTTCAATCCTTC 1337
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 955 ATGACGGGATTATATCTTACATTCAAGCTCACTTCAGTTGTTGAGAAGGTTCAATCCTTC 1014
Query 1338 TTTACGGCATTGAAGGCTTTGTCACGTAAAGAGGTGCACTACGGATCATATGCAACTACA 1397
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1015 TTTACGGCATTGAAGGCTTTGTCACGTAAAGAGGTGCATTACGGATCATATGCAACTACA 1074
Query 1398 GAGCAGGTAAATGCAGCAGGCGACCTGTGTGCCATCTGCCAGGAGAAGATGCACACCCCA 1457
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 GAGCAGGTAAATGCGGCAGGCGACCTGTGTGCCATCTGCCAGGAGAAGATGCACACCCCA 1134
Query 1458 ATTCTTCTTCGCTGCAAACACATGTTTTGCGAAGATTGCGTTTCAGAGTGGTTTGAGAGA 1517
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1135 ATTCTTCTTCGCTGCAAACACATGTTTTGCGAAGATTGCGTTTCGGAGTGGTTTGAGAGA 1194
Query 1518 GAGAGGACGTGTCCTTTGTGCAGGGCCTTGGTCAAACCAGCAGATCTGAAATCATTCGGT 1577
||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1195 GAGAGAACGTGTCCTCTGTGCAGGGCCTTGGTCAAACCAGCAGATCTAAAATCATTCGGT 1254
Query 1578 GATGGATCCACCAGCCTCTTCTTCCAGATTTTCTGA 1613
||||||||||||||||||||||||||||||||||||
Sbjct 1255 GATGGATCCACCAGCCTCTTCTTCCAGATTTTCTGA 1290
> Ahg486872 jgi|Araly1|486872|fgenesh2_kg.6__6__AT5G01970.1
Length=1403
Score = 89.8 bits (48), Expect = 6e-17
Identities = 60/65 (92%), Gaps = 4/65 (6%)
Strand=Plus/Minus
Query 1743 AAGATGTTCATACTATGTCATTTGTTAATATGAATGAAATCGCCTTTTATATTCCGTTGC 1802
|||||||||||||||||||||||||| | || ||||||| |||||||||||||||||||
Sbjct 1403 AAGATGTTCATACTATGTCATTTGTT-A-AT--ATGAAATAGCCTTTTATATTCCGTTGC 1348
Query 1803 AAAAA 1807
|||||
Sbjct 1347 AAAAA 1343
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67838726345
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5