BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G01970.1
Length=1468
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486872 jgi|Araly1|486872|fgenesh2_kg.6__6__AT5G01970.1 1832 0.0
> Ahg486872 jgi|Araly1|486872|fgenesh2_kg.6__6__AT5G01970.1
Length=1403
Score = 1832 bits (992), Expect = 0.0
Identities = 1196/1287 (93%), Gaps = 44/1287 (3%)
Strand=Plus/Plus
Query 214 CTGGCTTCTTTCGAGAGCCTCGTGGGTCCGCATCCATCAATTTGTCCATA-CA-Gtttt- 270
|||||||||||| |||||||||||||||||||||||||||||||||||| | ||||
Sbjct 129 CTGGCTTCTTTC--GAGCCTCGTGGGTCCGCATCCATCAATTTGTCCATATAATTTTTTC 186
Query 271 tttttttttATCAATCGTCTTTGAACCTAAATCATGGCGTATAGAAGAAGGCAGGGGATC 330
||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 187 TTTTTTTTTATCAATCGTCTTGGAACCTAAATTATGGCGTATAGAAGAAGGCAGGGGATC 246
Query 331 GGAAAGTTTGCGACTTTCAAGGAGGAGGTTGATCGGCTTCCCCCGGAAAGCATCACCGCC 390
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 247 GGAAAGTTTGCGACTTTCAAGGAGGAGATTGATCGGCTTCCCCCGGAAAGCATCACTGCC 306
Query 391 GTCAA-G---GAT-A--G--A--TC-A-CC--GCCAGCT-C--GA----TCC-----TCC 423
||||| | ||| | | | || | || | || || | | ||| |||
Sbjct 307 GTCAAGGATAGATCACCGCCAGCTCGATCCTTGACATCTCCTTCATCCTTCCGTGAGTCC 366
Query 424 CCTGCTTTTGACCAACCCAGATCTAAGAATTTTACGACCGAGCCAAAGGGCTTGTGGGGA 483
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 367 CCTGCTTTTGACCAACCCAGATCTAAGAATTTTACGACCGAGCCCAAGGGCTTGTGGGGA 426
Query 484 GTCATAGCCCAGAAAGCAAAATCTGTTATTGAAGATGATAAATCTAGTGATCGCTCTACA 543
|||||||||||||||||||||||||||||||||||||||||||| |||||| | || ||
Sbjct 427 GTCATAGCCCAGAAAGCAAAATCTGTTATTGAAGATGATAAATCCAGTGATAG--CT-CA 483
Query 544 ACAGCTTCTCAGTCCCGGTTTTCATACCTATCAGATGAAGGGTTCAAGAAAATGGACAAT 603
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 484 ACAGCTTCTCAGTCCCGGTTTTCATACCTATCAGACGAAGGGTTCAAGAAAATGGATAAT 543
Query 604 CCCAAGCTTCGGAGGGGGCTGGATAAGCTTACATCTTCTCTTAATCAGATCGGTGACACT 663
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 CCCAAGCTTCGGAGAGGGCTGGATAAGCTTACATCTTCTCTTAATCAGATCGGTGACACT 603
Query 664 TTTGAAAAAGCCTTTGAGGATGGCCGAACACTCGTTGAGAACAAAACAGCTGATATCATC 723
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 604 TTTGAGAAAGCCTTTGAGGATGGCCGAACACTCGTTGAGAACAAAACAGCTGATATCATC 663
Query 724 CAGGAAACACGAAAACTTCAAACCAGACGAAGAGGAACTGGTGGTGAAGATGAGAATCAG 783
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 CAGGAAACTCGAAAACTTCAAACCAGACGAAGAGGAACTGGTGGTGAAGATGAGAATCAG 723
Query 784 AATCAATCTTATGGAGTTAGTAGCTCATGGAAGAAGTCTCCAGAGCAGCCAATGCAGTTA 843
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 724 AATCAATCTTATGGAGTAAGTAGCTCATGGAAGAAATCTCCAGAGCAGCCAATGCAGTTA 783
Query 844 AATCATATAGAACATGAAACTCAACTCAAGGCATCTCGCGATGTGGCGATGGCCACTGCT 903
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 784 AATCATATGGAACATGAAACTCAACTCAAGGCATCTCGCGATGTGGCGATGGCCACAGCT 843
Query 904 GCTAAAGCTAAACTACTCCTCCGTGAGCTGAAAACTGTCAAAGCAGATCTTGCATTTGCG 963
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 844 GCTAAAGCAAAACTACTCCTCCGTGAGCTGAAAACTGTGAAAGCAGATCTTGCATTTGCG 903
Query 964 AAAGAGCGTTGTGCTCAGCTTGAGGAAGAGAACAAACATCTGAGAGAGAGCCACCGTGAG 1023
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 904 AAAGAGCGTTGTGCTCAGCTTGAGGAAGAGAACAAACATCTGAGAGAGAACCACCGTGAG 963
Query 1024 AAAGGAAGCAACCCTGCAGACGAAGATTTGATTCGACTCCAGCTGGAGAGCCTACTGGCA 1083
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 964 AAAGGAAGCAACCCTGCAGACGAAGATTTGATTCGGCTCCAGCTGGAGAGCCTACTGGCA 1023
Query 1084 GAGAAAGCACGGTTGGCTCATGAAAATTCTGTGTATGCGAGGGAAAACCGGTTCTTGAGG 1143
|||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1024 GAGAAAGCACGGCTGGCTCATGAAAATTCAGTGTACGCGAGGGAAAACCGGTTCTTGAGG 1083
Query 1144 GAGATAGTTGAATACCACCAGCTTACGATGCAGGACGTTGTGTACATAGACGAGGGCAGT 1203
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1084 GAGATAGTTGAATACCACCAGCTTACGATGCAGGATGTTGTGTACATAGACGAGGGCAGT 1143
Query 1204 GAAGAGGTGACACAAGTTTCCCCTTTCGTATCGACGTTGATGACTTCTTCACCCGCTGAC 1263
||||||||||||||||||| |||||| ||||| |||||||||||||||||||| || ||
Sbjct 1144 GAAGAGGTGACACAAGTTTACCCTTTAGTATCCACGTTGATGACTTCTTCACCTGCAGAG 1203
Query 1264 CGTTCACAGTCTCCTCCTAGTCAAGAGATGATTAAAGAGATGCTTGTGGTTGCTGAAGAG 1323
|| |||||||||| ||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1204 CGCCCACAGTCTCCG---AGTCAAGAGATGATTAAAGAGATTCTTGTGGTCGCTGAAGAG 1260
Query 1324 AGCTCTGTGTGTGCAAGTGTGGTTTCAGTTTCTTGAATTCATTATTATTAATTAT-TT-C 1381
||||||||||| |||| ||||||||||| |||||||||||||||||||| |||| || |
Sbjct 1261 AGCTCTGTGTGCGCAAATGTGGTTTCAGCTTCTTGAATTCATTATTATTGCTTATATTTC 1320
Query 1382 TTCTTGAATGAAATCAGATTGTTTTTTGCAACGGAATATAAAAGGCGATTTCATTCATAT 1441
|||||| ||||||||||||||||||||||||||||||||||||||| ||||||| || |
Sbjct 1321 TTCTTGGATGAAATCAGATTGTTTTTTGCAACGGAATATAAAAGGCTATTTCAT--AT-T 1377
Query 1442 TAACAAATGACATAGTATGAACATCTT 1468
||||||||||||||||||||||||||
Sbjct 1378 -AACAAATGACATAGTATGAACATCTT 1403
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54926133290
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5