BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G02000.1 Length=441 Score E Sequences producing significant alignments: (Bits) Value Ahg892007 jgi|Araly1|892007|Al_scaffold_0006_3 484 2e-136 > Ahg892007 jgi|Araly1|892007|Al_scaffold_0006_3 Length=339 Score = 484 bits (262), Expect = 2e-136 Identities = 307/328 (94%), Gaps = 5/328 (2%) Strand=Plus/Plus Query 1 ATGGAGAACGAGGTGGGATGGATGAATGAAGCGTCGAAGGATAGCAGCAACAATGGTGAA 60 |||||||| |||||| ||||||||||||||| |||| |||||||||||| |||||||| Sbjct 1 ATGGAGAATGAGGTGCGATGGATGAATGAAGTGTCGTCCGATAGCAGCAACGATGGTGAA 60 Query 61 TCTTTCATTGAAATACAAATCAACAAAGCAGTCAGA-ACCACAGGATTGAGCATCTCTTC 119 ||||||||||||||| ||||||||||| |||||| | | ||||||||||||||||||||| Sbjct 61 TCTTTCATTGAAATAAAAATCAACAAACCAGTCACAGA-CACAGGATTGAGCATCTCTTC 119 Query 120 TTCGCCATCTCCCGAGAACGAAATGCAGACGACGACAGCAATCTTCTCATCGGCCACTAG 179 ||||||||||||||| |||||||||| | |||||||||||||||||||||||| |||| Sbjct 120 TTCGCCATCTCCCGATAACGAAATGC--A-GACGACAGCAATCTTCTCATCGGCGTCTAG 176 Query 180 TTGCTTCTCAGCATACAGCAGCGTGACGAGGTTGATGATGAAAGTGGGGTGTTTGAGTAT 239 ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 177 TTGCTTCTCTGCATACAGCAACGTGACGAGGTTGATGATGAAAGTGGGGTGTTTGAGTAT 236 Query 240 AGTGGGAGTCATAAGAGAGAAAGTAAACGTGGGAGAGAGGTGGGTCCTCCAAGTTATACA 299 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 237 AGTGGGAGTCATAAGAGAGAAAGTGAACGTGGGAGAGAGGTGGGTCCTCCAAGTTATACA 296 Query 300 GAGACGACGAAACAAGAGCCCCCTACGA 327 |||||||||||||||||||||||||||| Sbjct 297 GAGACGACGAAACAAGAGCCCCCTACGA 324 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 15910880613 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5