BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G02000.1

Length=441
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg892007 jgi|Araly1|892007|Al_scaffold_0006_3                       484    2e-136


> Ahg892007 jgi|Araly1|892007|Al_scaffold_0006_3
Length=339

 Score =  484 bits (262),  Expect = 2e-136
 Identities = 307/328 (94%), Gaps = 5/328 (2%)
 Strand=Plus/Plus

Query  1    ATGGAGAACGAGGTGGGATGGATGAATGAAGCGTCGAAGGATAGCAGCAACAATGGTGAA  60
            |||||||| |||||| ||||||||||||||| ||||   |||||||||||| ||||||||
Sbjct  1    ATGGAGAATGAGGTGCGATGGATGAATGAAGTGTCGTCCGATAGCAGCAACGATGGTGAA  60

Query  61   TCTTTCATTGAAATACAAATCAACAAAGCAGTCAGA-ACCACAGGATTGAGCATCTCTTC  119
            ||||||||||||||| ||||||||||| |||||| | | |||||||||||||||||||||
Sbjct  61   TCTTTCATTGAAATAAAAATCAACAAACCAGTCACAGA-CACAGGATTGAGCATCTCTTC  119

Query  120  TTCGCCATCTCCCGAGAACGAAATGCAGACGACGACAGCAATCTTCTCATCGGCCACTAG  179
            ||||||||||||||| ||||||||||  | ||||||||||||||||||||||||  ||||
Sbjct  120  TTCGCCATCTCCCGATAACGAAATGC--A-GACGACAGCAATCTTCTCATCGGCGTCTAG  176

Query  180  TTGCTTCTCAGCATACAGCAGCGTGACGAGGTTGATGATGAAAGTGGGGTGTTTGAGTAT  239
            ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  177  TTGCTTCTCTGCATACAGCAACGTGACGAGGTTGATGATGAAAGTGGGGTGTTTGAGTAT  236

Query  240  AGTGGGAGTCATAAGAGAGAAAGTAAACGTGGGAGAGAGGTGGGTCCTCCAAGTTATACA  299
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  237  AGTGGGAGTCATAAGAGAGAAAGTGAACGTGGGAGAGAGGTGGGTCCTCCAAGTTATACA  296

Query  300  GAGACGACGAAACAAGAGCCCCCTACGA  327
            ||||||||||||||||||||||||||||
Sbjct  297  GAGACGACGAAACAAGAGCCCCCTACGA  324



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15910880613


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5