BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G02010.1
Length=2133
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486978 jgi|Araly1|486978|fgenesh2_kg.6__112__AT5G02010.1 3066 0.0
> Ahg486978 jgi|Araly1|486978|fgenesh2_kg.6__112__AT5G02010.1
Length=2054
Score = 3066 bits (1660), Expect = 0.0
Identities = 1963/2099 (94%), Gaps = 61/2099 (3%)
Strand=Plus/Plus
Query 31 GAGAAGATAAAGTTGGTGTTTTTAAATCTTATGTT--G-AAGATGCAGAGAGATCGAGGA 87
|||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||
Sbjct 1 GAGAAGATAAAGTTGGTGTTTTTAAA-CTTATGTTGAGAAAGATGCAGAGAGATCGAGGA 59
Query 88 AGACAGAGCAAGAGAACCTCTTCACTCACAGACCCACTCACTGCATTTTCTCTTCTTTTC 147
||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 60 AGAGAGAGCAAGAGAACCTCTTCACTCACAGACCCAGTCACTGCATTTTCTTTTCTTTTC 119
Query 148 TCAG-AAA-ATA-CTTTTTTCCCCCGAGAAAATGTT-CCACAAGAATCAGATCGAACAAT 203
|| | ||| ||| ||||||| ||||||||||| || ||| ||||||||||||||||||
Sbjct 120 TCGGAAAATATATCTTTTTT--CCCGAGAAAATTTTCCCA-AAGAATCAGATCGAACAAA 176
Query 204 AAGGGTTCTCATAAATGTAATGCGATTCAAGCACGAGAATATCCACAGAGAGAGATACAG 263
|||||||||| | ||||||||||||||||||||||||| ||| | |||||||| | | ||
Sbjct 177 AAGGGTTCTCTTTAATGTAATGCGATTCAAGCACGAGACTAT-C-CAGAGAGATA-AAAG 233
Query 264 AAGGCTCCTTTTGAGTATTTGAGCAAGTTTCAGAACTCGAAGACTGTGTTTGAAAGAGAG 323
||||||| |||||||||||||||||| |||| ||| || | |
Sbjct 234 -AGGCTCC---------TTTGAGCAAGTTTCAGAAATCGACGAC--TG--T--------G 271
Query 324 ATTCAGGCGTAGTAATAATGGATGGTTCGTCGGAAAATTTGCCAGAAGTGGAAGAGAAAG 383
|| | | |||||||| ||||||||||||| |||||| |||||||||||||||||
Sbjct 272 -TT------T-G-AATAATGGGTGGTTCGTCGGAAGATTTGCGAGAAGTGGAAGAGAAAG 322
Query 384 GTAGAGAAAGCAGTTGCTGCAGCTCGGAAACAACCAGACAAGAGGAGGAAGAACAAAGCC 443
||||||||||||||||||||||||||||||||||||||| | | |||||||||||||| |
Sbjct 323 GTAGAGAAAGCAGTTGCTGCAGCTCGGAAACAACCAGAC-A-A-GAGGAAGAACAAAGTC 379
Query 444 CTAGCTGTACGGAGGATTTCACGGCTTCTCCGGTTTCATCTCGTTGGTCTGTGAAGAACA 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 380 CTAGCTGTACGGAGGATTTCACGGCTTCTCCGGTTTCATCTCGTTGGTCTGTGAAGAACA 439
Query 504 TCGATGGAGAGAAGAAGAAGATTCGTTCGGATTCAAGAGTTTCAGAGGTTGAGATGATGA 563
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 440 TCGATGGAGAGAAGAAGAAAATTCGTTCGGATTCAAGAGTTTCAGAGGTTGAGATGATGA 499
Query 564 AGGAAAGATTTTCGAAACTGCTGCTTGGAGAAGATATGTCAGGTTCTGGAAATGGTGTCT 623
|||||||||||||||| ||| | ||||| |||||||||||||||||||||||||||||||
Sbjct 500 AGGAAAGATTTTCGAAGCTGTTACTTGGGGAAGATATGTCAGGTTCTGGAAATGGTGTCT 559
Query 624 GTACAGCTTTAGCTATCTCAAACGCAATCACTAATCTTTGTGCTACCTTGTTTGGACAAC 683
| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 560 GCACAGCTTTAGCTATCTCAAACGCAATTACTAATCTTTGTGCTACCTTGTTTGGGCAAC 619
Query 684 TATGGAGGTTAGAACCACTGCCTACAGAGAAGAAAGAGATGTGGAGAAGAGAAATGGAAT 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 620 TATGGAGGTTAGAACCACTGCCTACAGAGAAGAAAGAGATGTGGAGAAGAGAAATGGAAT 679
Query 744 GGCTTCTCTGTGTCAGTGATCACATTGTAGAGATGACTCCTACTTGGCAAACATTTCCTG 803
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 680 GGCTTCTCTGTGTCAGTGATCACATTGTAGAGATGACTCCAACTTGGCAAACATTTCCTG 739
Query 804 ATGGAACCAAACTTGAGATAATGACTTGCAGACCAAGATCAGATCTTTATGTTAACCTCC 863
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 740 ATGGAACCAAACTTGAGATAATGACTTGCAGACCAAGATCAGATCTTTATGTTAACCTCC 799
Query 864 CAGCTCTCAGGAAACTAGATAACATGCTTCTTGAGATATTAGATAGTTTTGAGGAGACAG 923
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 800 CAGCTCTCAGGAAACTAGATAACATGCTTCTTGAGATATTAGATAGTTTTGAGGAGACAG 859
Query 924 AGTTTTGGTATGTTGACCAAGGAATCATGGCACACGAATCAGCAGCGGACG--G-ATCAT 980
||||||||||||||||||||||||||||||| |||||||||||| |||||| | |||||
Sbjct 860 AGTTTTGGTATGTTGACCAAGGAATCATGGCGCACGAATCAGCAACGGACGACGGATCAT 919
Query 981 CTTCTTTCCGAAAATCTTTTCAGAGACAAGAAGACAAATGGTGGCTTCCTGTTCCACGGG 1040
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 920 CTTCTTTCCGAAAATCTTTTCAGAGACAAGAAGACAAATGGTGGCTTCCTGTTCCACGGG 979
Query 1041 TTTCACCAGGAGGTTTACAAGAAAACTCAAGAAAACAGTTGCAGCATAAACGCGACTGTA 1100
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 980 TTTCACAAGGAGGTTTACAAGAAAACTCAAGAAAACAGTTGCAGCATAAACGCGACTGCA 1039
Query 1101 CTAATCAGATATTAAAAGCTGCTATGGCCATCAACAGTATCACACTCGCTGACATGGAAA 1160
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1040 CTAATCAGATATTAAAAGCTGCTATGGCCATCAACAGTATCACACTCGCCGACATGGAAA 1099
Query 1161 TCCCTGAATCATACCTTGAATCTCTTCCGCGGAAAGGGAGATCTTGCCTTGGTGACTTAA 1220
|||||||||||||||| |||||||||||||||||||| ||||| || || ||||||||||
Sbjct 1100 TCCCTGAATCATACCTCGAATCTCTTCCGCGGAAAGGAAGATCCTGTCTCGGTGACTTAA 1159
Query 1221 TCTACAGATACATTTCATCGGATCAATTTTCACCTGAATGTCTTCTTGATTGCCTTGACT 1280
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1160 TCTACAGATACATTTCATCGGATCAATTCTCACCTGAATGTCTTCTTGATTGCCTTGACT 1219
Query 1281 TATCCTCTGAACATCAAGCCATAGAGATAGCTAACCGAGTCGAGTCATCGATCTATCTAT 1340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1220 TATCCTCTGAACATCAAGCCATAGAGATAGCTAACCGAGTCGAGTCATCGATCTATCTAT 1279
Query 1341 GGCACAAAAGAACTAATTCCAAACCAGCTACTAATACCAAAACGTCGTGGGAAATGGTGA 1400
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 1280 GGCACAAAAGAACTAATTCCAAACCATCTACTAATACCAAAACGTCATGGGAAATGGTGA 1339
Query 1401 AAGAACTAATGGTTGATGCAGATAAGCTAGAGCTAATGGCGGATCGAGCTGAAAGTTTAT 1460
||||||||||||||||||| || ||||||||| | |||||||||||||||||||||||||
Sbjct 1340 AAGAACTAATGGTTGATGCTGACAAGCTAGAGTTGATGGCGGATCGAGCTGAAAGTTTAT 1399
Query 1461 TGCTTTCTTTAAAACAACGATTCCCAGGTCTTCCTCAAACCGCTCTAGACATGAGCAAAA 1520
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1400 TGCTTTCTTTAAAACAACGATTCCCAGGTCTCCCTCAAACCGCTCTAGACATGAGCAAAA 1459
Query 1521 TCCAATACAACAAGGACATCGGGAAATCGATTCTGGAAAGCTATTCAAGAGTTCTAGAGA 1580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1460 TCCAATACAACAAGGACATCGGGAAATCGATTCTGGAAAGCTATTCAAGAGTTCTAGAGA 1519
Query 1581 GCTTAGCATTCAACATTGTTGCACGCATCGATGATTTGCTCTTTGTTGATGATCTTACAA 1640
||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1520 GCTTAGCTTTCAACATTGTTGCACGTATCGATGACTTGCTCTTTGTTGATGATCTTACAA 1579
Query 1641 GACATTCATCGGATCAGATTCCTACAACATTAGGCAACAACGGGAATGACGCTCCTAAGA 1700
|||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 1580 GACATTCATCAGATCAGATTCCAACAACATTAGGCAACAACGGGAATGACTCTCCTAAGA 1639
Query 1701 GCATTGCAGTGCCGGTTTCAAACTACACAACTCCGAGCTACTCGCCTTCAAAACAGGAGC 1760
||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1640 GCATTGCAGTGCCAGTCTCAAACTACACAACTCCGAGCTACTCGCCATCAAAACAGGAGC 1699
Query 1761 TTCGATCATCAATTACAGTTCCACCATCTCCCTCCCGGTTCAAGATTCCTCACAGTAGCA 1820
| ||||||||||| || ||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1700 TCCGATCATCAATCACCGTTCCGCCATCTCCTTCCCGGTTCAAGATTCCTCACAGTAGCA 1759
Query 1821 GTGTTAAAAGGGTTTTGACAGCTTATGTAACAAAGAACGAACCAAGACTGAAGAATC-TT 1879
||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||| ||
Sbjct 1760 GTGTTAAAAGGGTTTTGACGGCTTATGTAACAAAGAACGAACCAAGATTGAAGGATCGTT 1819
Query 1880 CCTTTAGAAAGATCGAGCCGTTCTTCGTCGAGTGAGAGATTGTCTCTGGAGAAATGCATG 1939
| | |||||| | | |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1820 C-TGTAGAAACACCAAGCCGTTCTTCGTCGAGTGAGAGATTGTCTCTCGAGAAATGCATG 1878
Query 1940 AAGGAGTCGTTGAATGTATCGAACCTTGATCCTGGGATTTGAATTAC--CTACACCTTGG 1997
||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||
Sbjct 1879 AAGGAGTCGTTGAATGTATCGAACCTTGATCCTGGGATTTGAATTACTACTCCTCCTTGG 1938
Query 1998 AAAAGTCTCTGTTTTTGGATCCCTTTTCCTTTCAGTATCTTC-TATAATGTTTATTATTC 2056
|||||||||||||||||||||||||||||| ||| | | || |||||||||||||||||
Sbjct 1939 AAAAGTCTCTGTTTTTGGATCCCTTTTCCTATCAATGTTTTTATATAATGTTTATTATTC 1998
Query 2057 TTTCTTTCTTGTGTGTAGTTT-AGATTTGTATAATAATAATTGGAAAGATGGGCTTTGA 2114
|||||| ||||||||||| |||||||||||||||||||||||||||| | ||||||
Sbjct 1999 TTTCTT----GTGTGTAGTTTTAGATTTGTATAATAATAATTGGAAAGATAGACTTTGA 2053
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80256146215
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5