BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G02020.1

Length=1101
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg939577 jgi|Araly1|939577|scaffold_600121.1                        569    1e-161


> Ahg939577 jgi|Araly1|939577|scaffold_600121.1
Length=519

 Score =  569 bits (308),  Expect = 1e-161
 Identities = 455/520 (88%), Gaps = 34/520 (7%)
 Strand=Plus/Plus

Query  188  GAGCGACGAATTCCAATGGAAGGAAGAAAGAAGAAAGCTTCGTCTTCCTCTCCTTGTTCT  247
            ||||||| || | ||||||| |||||||||||||||||||| |||| || ||| | ||||
Sbjct  10   GAGCGACCAAAT-CAATGGATGGAAGAAAGAAGAAAGCTTCCTCTT-CT-TCC-TCTTCT  65

Query  248  TCTTC-CT--CGTTAACCTCTGAGCTTTTTGGTTCCAGAGAAAA-CC--C-T-T-CTTCT  298
            || ||  |  | |||||||||||||||||||||||||||||||| ||  | | | |||||
Sbjct  66   TCCTCATTAACATTAACCTCTGAGCTTTTTGGTTCCAGAGAAAACCCTTCTTCTCCTTCT  125

Query  299  -C--CTTCCTCTTCTGGTATTCTCGGATCCATTTTTCCTCCTCCTTCTAAGGTTTTGGGA  355
             |  ||||||||||||| ||| ||||||||||||| |||||||||||| ||||| |||||
Sbjct  126  CCTTCTTCCTCTTCTGGGATTTTCGGATCCATTTTCCCTCCTCCTTCTCAGGTTCTGGGA  185

Query  356  AGAGAATCTGTGCGACAAGAGACTGTGACTGGTGGTTGCTGGAACGAGAAAACCTCCAAG  415
            ||||||||| |||||||||||||| || ||| | |  |||||||||| ||||||||||||
Sbjct  186  AGAGAATCTATGCGACAAGAGACTCTGGCTGCT-G--GCTGGAACGACAAAACCTCCAAG  242

Query  416  AC---TG--G----T---GGTAATGTTGATAGAAACAGGGAACAACAGGAGAATCATGGT  463
            ||   ||  |    |   ||| ||||||||||||| ||||||||||||||||||||||||
Sbjct  243  ACTGTTGAAGATTTTGCAGGTGATGTTGATAGAAATAGGGAACAACAGGAGAATCATGGT  302

Query  464  TCAGGTTATCAGCAGGATCAGAGAGTACAACCCTGTCATCTGAGTTCTTCCATCTATTAC  523
            ||||||||||||  | |||||||||||||||| |||||||||||||||||||||||||||
Sbjct  303  TCAGGTTATCAG--G-ATCAGAGAGTACAACCTTGTCATCTGAGTTCTTCCATCTATTAC  359

Query  524  GGTGGTCCTGATGTTTATTTCCAGCCTCAAAATTCCACCAGCAACTCTACGAACAAGAAA  583
            ||||| || |||||||||||||||||||| ||||||| || |||||||||||||||||||
Sbjct  360  GGTGGCCCAGATGTTTATTTCCAGCCTCAGAATTCCAGCATCAACTCTACGAACAAGAAA  419

Query  584  GATGGAGGCGAAGATGATTCCGGAAGTGCCTCAAGAGGAAATTGGTGGCAAGGGTCTCTG  643
            |||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct  420  GATGGAGGGGAAGATGATTCCGGAAGTGCCGCAAGAGGAAATTGGTGGCAAGGATCTCTG  479

Query  644  TATTACTAAGTAGAGATCTTACTACTTAAGCAAATGTTAT  683
            |||||||||||||||||||||||| ||||||||| |||||
Sbjct  480  TATTACTAAGTAGAGATCTTACTATTTAAGCAAACGTTAT  519



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 41020258692


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5