BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G02030.1
Length=2017
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486980 jgi|Araly1|486980|fgenesh2_kg.6__114__AT5G02030.1 3029 0.0
> Ahg486980 jgi|Araly1|486980|fgenesh2_kg.6__114__AT5G02030.1
Length=1989
Score = 3029 bits (1640), Expect = 0.0
Identities = 1900/2018 (94%), Gaps = 47/2018 (2%)
Strand=Plus/Plus
Query 13 tctctctctcttaacctctcgttt-cgccattatctcttacactgttactctctctctct 71
|||||||||||||||||||||||| | ||||||||||||||||||||||| | |||||||
Sbjct 1 TCTCTCTCTCTTAACCTCTCGTTTCCCCCATTATCTCTTACACTGTTACTATATCTCTCT 60
Query 72 cttcttcttcttcttcttcttctGCATCTCATCGACATCATCCT-TTCCCATGGCTGATG 130
| | ||||||| | || || || | | ||| ||||||||| || ||||||||||||
Sbjct 61 C-T-TTCTTCTGCATC-TCATC-G-A---CAT---CATCATCCTCTT-CCATGGCTGATG 108
Query 131 CATACGAGCCTTATCATGTTCTTCAACAAAGCCGGCGAGACAAACTTCGTATTCCATCTC 190
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct 109 CATACGAGCCTTATCATGTTCTTCAACAAAGCCGTCGAGACAAACTTCGGATTCCTTCTC 168
Query 191 TCGATTCCCACTTCCACTTTCACcctcctcctcctccttcctccGGCGGCGGAGGTGGCG 250
||||||| ||||||||||||||||||||||||||| ||||||||||||| || |||||||
Sbjct 169 TCGATTCTCACTTCCACTTTCACCCTCCTCCTCCTTCTTCCTCCGGCGGAGGCGGTGGCG 228
Query 251 TCTTTCCTCTCGCTGATTCCGATTTCCTCGCAGCCGGTGGCTTTCACTCCAACAACAACA 310
||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 229 TCTTTCCTCTCGCCGATTCTGATTTCCTTGCAGCCGGTGGCTTTCACTCCAACAACAACA 288
Query 311 ACAACCACATATCTAACCCTAGCTACAGTAATTTCATGGGATTTCTCGGTGGCCCTTCTT 370
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 289 CCAACCACATATCTAACCCTAGCTACAGTAATTCCATGGGATTTCTCGGTGGCCCTTCTT 348
Query 371 CTTCTTCATCCACCGCAGTCGCCGTCGCCGGAGATCATTCCTTTAACGCCGGACTTTCTT 430
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 349 CTTCATCATCCACCGCAGTCGCAGTCGCCGGAGATCATTCCTTTAACGCCGGACTTTCTT 408
Query 431 CCGGAGACGTTCTTGTCTTCAAACCCGAGCCTCTATCTCTATCTTTGTCCTCTCACCCTA 490
|||| ||||| || ||||| |||||||||||| ||||||||||||||||||| |||||||
Sbjct 409 CCGGGGACGTACTCGTCTTTAAACCCGAGCCTTTATCTCTATCTTTGTCCTCACACCCTA 468
Query 491 GACTCGCTTACGATCTAGTCGTTCCCGGTGTTGTTAACTCCGGATTCTGTAGATCTGCCG 550
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 469 GACTCGCTTACGATCTAGTCGTTCCTGGTGTTGTTAACTCCGGATTCTGTAGATCTGCCG 528
Query 551 GTGAAGCCAACGCCGCCGCCGTCACCATCGCGTCTAGAAGCTCTGGTCCTCTCGGACCTT 610
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||
Sbjct 529 GTGAAGCCAACGCCGCCGCCGTCACCATCGCGTCCAGAAGCTCTGGCCCTCTCGGGCCTT 588
Query 611 TCACGGGCTACGCGTCGATTCTTAAAGGATCAAGGTTCTTGAAACCAGCACAGATGCTTC 670
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 589 TCACGGGCTACGCATCGATTCTTAAAGGATCAAGATTCTTGAAACCAGCACAGATGCTTC 648
Query 671 TTGATGAGTTTTGTAATGTGGGTCGTGGGATTTACACCGACAAAGTCATCGACGACGATG 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 TTGATGAGTTTTGTAATGTGGGTCGTGGGATTTACACCGACAAAGTCATCGACGACGATG 708
Query 731 ATTCTTCTCTGCTTTTTGATCCGACGGTTGAGAATCTCTGCGGTGTTTCTGATGGCGGCG 790
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 709 ATTCTTCTCTGCTTTTTGATCCGACGGTTGAGAATCTCTGCGGTGTTCCTGATGGCGGCG 768
Query 791 GAGGAGATAATGGAAAGAAAAAATCAAAACTCATCTCCATGCTCGACGAGGTTTACAAGA 850
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 GAGGAGATAATGGAAAGAAAAAATCAAAACTCATCTCCATGCTCGACGAGGTTTACAAGA 828
Query 851 GGTATAAGCAATACTATGAGCAGCTACAAGCTGTGATGGGATCATTCGAATGCGTTGCAG 910
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 829 GGTATAAGCAATACTATGAGCAGCTACAAGCTGTGATGGGCTCATTCGAATGCGTTGCAG 888
Query 911 GTCTCGGGCACGCTGCTCCGTACGCTAAC-TTAGCCTTGAAAGCATTGTCTAAGCATTTC 969
|||| |||||||||||||||||||| ||| |||||||| |||||||||||||||||||||
Sbjct 889 GTCTTGGGCACGCTGCTCCGTACGC-AACCTTAGCCTTAAAAGCATTGTCTAAGCATTTC 947
Query 970 AAGTGTTTGAAGAATGCTATAACGGACCAGCTTCAATTCAGCCacaacaacaagatccaa 1029
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 948 AAGTGTTTGAAGAATGCTATAACGGACCAGCTTCAATTCAGCCACAATAACAAGAT--A- 1004
Query 1030 caacaacaacaaTGTGGTCATCCGATGAACTCTGAGAATAAGACTGATTCTTTAAGATTT 1089
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1005 CAACAACAACAATGTGGTCATCCGATGAACTCCGAGAATAAGACTGATTCTTTGAGATTT 1064
Query 1090 GGAGGAAGTGATAGTTCTAGAGGCTTATGTTCTGCTGGTCAAAGACATGGATTTCCTGAT 1149
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1065 GGAGGAAGTGATAGTTCTAGAGGCTTTTGTTCTGCTGGTCAAAGACATGGATTTCCTGAT 1124
Query 1150 CATCATGCTCCTGTTTGGAGACCGCACCGTGGCCTACCCGAACGTGCTGTTACTGTTCTA 1209
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1125 CATCATGCTCCTGTTTGGAGACCGCACCGTGGCCTACCCGAACGTGCTGTTACCGTTCTA 1184
Query 1210 AGGGCTTGGCTCTTCGATCATTTCTTGCATCCTTATCCAACAGATACAGACAAACTCATG 1269
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1185 AGGGCTTGGCTCTTCGATCATTTCTTGCATCCTTATCCAACGGATACAGACAAACTCATG 1244
Query 1270 CTGGCTAAGCAGACAGGTCTCTCCAGAAATCAGGTATCGAATTGGTTCATAAACGCAAGA 1329
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1245 CTGGCTAAGCAGACGGGTCTCTCTAGAAATCAGGTATCGAATTGGTTCATAAACGCAAGA 1304
Query 1330 GTTAGGGTTTGGAAGCCGATGGTGGAAGAGATTCACATGCTGGAGACTCGACAATCTCAG 1389
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1305 GTTAGGGTTTGGAAACCGATGGTGGAAGAGATTCACATGCTGGAGACTCGACAATCTCAG 1364
Query 1390 AGATCTTCTTCTTCCTCTTGGAGAGACGAACGTACTAGCACCACCGTCTTCCCTGACAAC 1449
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1365 AGATCTTCTTCTTCTTCTTGGAGAGACGAACGTAGTAGCACCACCGTCTTCCCTGACAAC 1424
Query 1450 AGCAACAACAACCCATCTTCGTCCTCGGCACAGCAAAGACCTAACAACTCATCTCCGCCT 1509
| |||||||||||||||||| ||| ||| |||||||||| ||||||||||| ||||| ||
Sbjct 1425 AACAACAACAACCCATCTTCCTCCGCGGTACAGCAAAGAGCTAACAACTCACCTCCGGCT 1484
Query 1510 AGACGGGCACGAAACGACGACGTTCATGGCACAAACAACAACAACAGCTATGTAAACAGT 1569
|||||| | ||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 1485 AGACGGACTCGAAACGACGACGTTCATGGCCC---CAACAACAACAGCTATGTAAACAGT 1541
Query 1570 GGGAGCGGCGGCGGTAGT-GCG-G-TTGGTTTCTCGTATGGAATTGGGTCGTCGAATGTG 1626
||||||||||||||| || ||| | |||| ||||||||||||||||||||||||||||||
Sbjct 1542 GGGAGCGGCGGCGGTGGTAGCGCGGTTGGCTTCTCGTATGGAATTGGGTCGTCGAATGTG 1601
Query 1627 CCGGTGATGAATAGCAGCACAAACGGAGGAGTGTCTTTGACGTTAGGGCTTCATCATCAG 1686
||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 1602 CCGGTGATGAATAACAGCACAAACGGAG---TGTCGTTGACGTTAGGGCTTCATCATCAG 1658
Query 1687 ATTGGGTTACCGGAGCCTTTTCCGATGACAACTGCTCAGAGGTTTGGGCTTGATGGTGGT 1746
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1659 ATTGGGTTACCGGAGCCTTTCCCGATGACAACTGCTCAGAGGTTTGGGCTTGACGGTGGT 1718
Query 1747 AGTGGCGA------TGGTGGTGGTGGGTATGAAGGGCAAAATCGTCAGTTTGGGAGAGAT 1800
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1719 AGTGGCGACGGGGGTGGTGGTGGTGGGTATGAAGGGCAAAATCGTCAGTTTGGGAGAGAT 1778
Query 1801 TTTATTGGTGGTAGTAATCATCAGTTTCTACATGATTTTGTAGGTTGAGATTATTTGTGT 1860
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1779 TTTATTGGTGGTAGTAATCATCAGTTTCTACATGATTTTGTAGGATGAGATTATTTGTGT 1838
Query 1861 GGAAAGGAAA-AAATA--TGTTTGACGTTTGGGTATGTATAAGAAGATATGGGGGAATTG 1917
|||||| ||| ||| | |||||||||||||||||||||||||| |||||||||||||
Sbjct 1839 GGAAAGAAAAGAAAAAAATGTTTGACGTTTGGGTATGTATAAGA---TATGGGGGAATTG 1895
Query 1918 AAATGCATATGATGTGTATATTAGAATGTTT-CTTCTTCtttttttGTT-GTTTGCTTAC 1975
|||||||||||||||||||||||||| |||| ||||||||| ||||||| |||| | |
Sbjct 1896 AAATGCATATGATGTGTATATTAGAACGTTTTCTTCTTCTTATTTTGTTTGTTT-C---C 1951
Query 1976 TTTCACAAATGTTAT-CTTTTTAAGAAATGAAATTGGA 2012
||||||||||| || ||||||||| ||||||||||||
Sbjct 1952 TTTCACAAATGGAATTCTTTTTAAGGAATGAAATTGGA 1989
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75837677795
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5