BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G02040.1
Length=1296
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486981 jgi|Araly1|486981|fgenesh2_kg.6__115__AT5G02040.1 1175 0.0
> Ahg486981 jgi|Araly1|486981|fgenesh2_kg.6__115__AT5G02040.1
Length=1036
Score = 1175 bits (636), Expect = 0.0
Identities = 731/777 (94%), Gaps = 5/777 (1%)
Strand=Plus/Plus
Query 213 GTTAACTAAGGATTGTGGAATCAGAAGTGTTGTG-TTTTTGTGATCGGAGATTATGGATT 271
|||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 171 GTTAACTAGGGATTGTGGAATCAGAAGTGTTGAGAGTTTTGTGATCGGAGATTATGGATT 230
Query 272 GGGGAAACGTAACGGTTGATGATCTCTTCGATGCTCTCCGAGAAGTTGACTGGTCGTCTC 331
|||||||||||||||| || |||||| |||||||||||||||||||||||||||| ||||
Sbjct 231 GGGGAAACGTAACGGTGGAGGATCTCGTCGATGCTCTCCGAGAAGTTGACTGGTCTTCTC 290
Query 332 CGCCGCGTCCTCCGTCTGAGTTCTTCTCAAGGTTCACCGTTCCTAAAT-CTGTCCCTAAA 390
|||||||||| ||||||||||||||||| ||||||||||||||||||| || || |||||
Sbjct 291 CGCCGCGTCCGCCGTCTGAGTTCTTCTCTAGGTTCACCGTTCCTAAATCCT-TCGCTAAA 349
Query 391 TGGGATAGTCGCCTCAAGTGCAATCTCTACTACTACCGAACAAACTATTTCATCATGATC 450
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 350 TGGGATAGTCGTCTCAAGTGCAATCTCTACTACTACCGAACAAACTATTTCATCATGATC 409
Query 451 GTCGTTATACTTGGATTGGGAGTCCTTACAAGGCCTTTAGCGATCTTCGCTGCGCTTTTG 510
||||||||||||||||||||| | |||||||||||| | || |||||| |||||||||||
Sbjct 410 GTCGTTATACTTGGATTGGGATTTCTTACAAGGCCTCTCGCTATCTTCTCTGCGCTTTTG 469
Query 511 ACAGCATTAAGTTTGGCATTTCTAAATGACAGCTTTGCAGGTTCTTTTAGTGAGAAGGCG 570
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 470 ACAGCATTAAGCGTGGCATTTCTAAATGACAGCTTTGCAGGTTCTTTTAGTGAGAAGGCA 529
Query 571 ACACGAACCGTCAGAAGATTCTCTCCACAGTTAGCTGCTAAAATGAGACCTCCTTTGACA 630
||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 530 ACACGAACCACCAGAAGATTCTCTCCACAATTAGCTGCTAAAATGAGACCGCCTTTGACA 589
Query 631 CCTGTCACTCGTGGGCGTCCATCATCAAAGAGAGCAATCCATGTATGTGGTCAACCCCGT 690
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 590 CCTGTCATTCGTGGACGTCCATCATCAAAGAGAGCAATCCATGTATGTGGTCAACCCCGT 649
Query 691 TGGGTTTTTGTCTTGACATGCTCACTTGTGAGTTTTGCTCTTTGGTATATTTCCTCTGGT 750
||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 650 TGGATCTTTGTCTTGACATGCTCACTTGTGAGTTTTGCTCTTTGGTATATTTCCTGTGGT 709
Query 751 TTGCTCAGAGTCTCGGTT-GCGCTACTCATTGCACATCTTGCAACAATTCTTCATGCAAG 809
||| ||| |||||| ||| ||||||||||||| || |||||| ||| |||||||||||||
Sbjct 710 TTGTTCACAGTCTC-GTTGGCGCTACTCATTGGACTTCTTGCTACAGTTCTTCATGCAAG 768
Query 810 CTTGAGAACACCGAACTTGAAGGCACGTTTTAACACATTTAGGGAGGAATTCCGAGCAGT 869
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 769 CTTGAGAACACCAAACTTGAAGGCACGTCTTAACACATTTAGGGAGGAATTCCGAGCAGT 828
Query 870 ATGGCGTAACTACAGCGAGATTTAGAGTAATTCTTTGGCAGCTTGTACCACCATGATCGT 929
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 829 GTGGCGTAACTACAGCGAGATTTAGAGTAATTCTTTGGCAGCTTGTACCACCATGATCGT 888
Query 930 GTTCTGCTGAGGACATAACGCTGTAAAGACCAAACTTACTGCCTTTCTCCAAGATAA 986
||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||
Sbjct 889 GTTCTGCTGAGGACATAACGCGGTAAAGACCAAACTTACAGCATTTCTCCAAGATAA 945
Score = 89.8 bits (48), Expect = 5e-17
Identities = 54/57 (95%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 139 TTCGACGAAGCTTTGATAATTTGATCTCAATCGATCGATTCTATTGAGAATTTGTGT 195
|||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||
Sbjct 116 TTCGACGAAGCTTTTATAATTAGATCACAATCGATCGATTCTATTGAGAATTTGTGT 172
Score = 89.8 bits (48), Expect = 5e-17
Identities = 55/58 (95%), Gaps = 2/58 (3%)
Strand=Plus/Plus
Query 1015 ATGTTCAATCTGGATTTGTTGCTCAATGACTGGGATCATCTGttttttctttgatttg 1072
||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 945 ATGTTCAATCTGGATTTGTTGCTCAATGAATGGGATCATCTGTTTT--CTTTGATTTG 1000
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48454227507
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5