BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G02040.1 Length=1296 Score E Sequences producing significant alignments: (Bits) Value Ahg486981 jgi|Araly1|486981|fgenesh2_kg.6__115__AT5G02040.1 1175 0.0 > Ahg486981 jgi|Araly1|486981|fgenesh2_kg.6__115__AT5G02040.1 Length=1036 Score = 1175 bits (636), Expect = 0.0 Identities = 731/777 (94%), Gaps = 5/777 (1%) Strand=Plus/Plus Query 213 GTTAACTAAGGATTGTGGAATCAGAAGTGTTGTG-TTTTTGTGATCGGAGATTATGGATT 271 |||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||| Sbjct 171 GTTAACTAGGGATTGTGGAATCAGAAGTGTTGAGAGTTTTGTGATCGGAGATTATGGATT 230 Query 272 GGGGAAACGTAACGGTTGATGATCTCTTCGATGCTCTCCGAGAAGTTGACTGGTCGTCTC 331 |||||||||||||||| || |||||| |||||||||||||||||||||||||||| |||| Sbjct 231 GGGGAAACGTAACGGTGGAGGATCTCGTCGATGCTCTCCGAGAAGTTGACTGGTCTTCTC 290 Query 332 CGCCGCGTCCTCCGTCTGAGTTCTTCTCAAGGTTCACCGTTCCTAAAT-CTGTCCCTAAA 390 |||||||||| ||||||||||||||||| ||||||||||||||||||| || || ||||| Sbjct 291 CGCCGCGTCCGCCGTCTGAGTTCTTCTCTAGGTTCACCGTTCCTAAATCCT-TCGCTAAA 349 Query 391 TGGGATAGTCGCCTCAAGTGCAATCTCTACTACTACCGAACAAACTATTTCATCATGATC 450 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 350 TGGGATAGTCGTCTCAAGTGCAATCTCTACTACTACCGAACAAACTATTTCATCATGATC 409 Query 451 GTCGTTATACTTGGATTGGGAGTCCTTACAAGGCCTTTAGCGATCTTCGCTGCGCTTTTG 510 ||||||||||||||||||||| | |||||||||||| | || |||||| ||||||||||| Sbjct 410 GTCGTTATACTTGGATTGGGATTTCTTACAAGGCCTCTCGCTATCTTCTCTGCGCTTTTG 469 Query 511 ACAGCATTAAGTTTGGCATTTCTAAATGACAGCTTTGCAGGTTCTTTTAGTGAGAAGGCG 570 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 470 ACAGCATTAAGCGTGGCATTTCTAAATGACAGCTTTGCAGGTTCTTTTAGTGAGAAGGCA 529 Query 571 ACACGAACCGTCAGAAGATTCTCTCCACAGTTAGCTGCTAAAATGAGACCTCCTTTGACA 630 ||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||| Sbjct 530 ACACGAACCACCAGAAGATTCTCTCCACAATTAGCTGCTAAAATGAGACCGCCTTTGACA 589 Query 631 CCTGTCACTCGTGGGCGTCCATCATCAAAGAGAGCAATCCATGTATGTGGTCAACCCCGT 690 ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 590 CCTGTCATTCGTGGACGTCCATCATCAAAGAGAGCAATCCATGTATGTGGTCAACCCCGT 649 Query 691 TGGGTTTTTGTCTTGACATGCTCACTTGTGAGTTTTGCTCTTTGGTATATTTCCTCTGGT 750 ||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 650 TGGATCTTTGTCTTGACATGCTCACTTGTGAGTTTTGCTCTTTGGTATATTTCCTGTGGT 709 Query 751 TTGCTCAGAGTCTCGGTT-GCGCTACTCATTGCACATCTTGCAACAATTCTTCATGCAAG 809 ||| ||| |||||| ||| ||||||||||||| || |||||| ||| ||||||||||||| Sbjct 710 TTGTTCACAGTCTC-GTTGGCGCTACTCATTGGACTTCTTGCTACAGTTCTTCATGCAAG 768 Query 810 CTTGAGAACACCGAACTTGAAGGCACGTTTTAACACATTTAGGGAGGAATTCCGAGCAGT 869 |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 769 CTTGAGAACACCAAACTTGAAGGCACGTCTTAACACATTTAGGGAGGAATTCCGAGCAGT 828 Query 870 ATGGCGTAACTACAGCGAGATTTAGAGTAATTCTTTGGCAGCTTGTACCACCATGATCGT 929 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 829 GTGGCGTAACTACAGCGAGATTTAGAGTAATTCTTTGGCAGCTTGTACCACCATGATCGT 888 Query 930 GTTCTGCTGAGGACATAACGCTGTAAAGACCAAACTTACTGCCTTTCTCCAAGATAA 986 ||||||||||||||||||||| ||||||||||||||||| || |||||||||||||| Sbjct 889 GTTCTGCTGAGGACATAACGCGGTAAAGACCAAACTTACAGCATTTCTCCAAGATAA 945 Score = 89.8 bits (48), Expect = 5e-17 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 139 TTCGACGAAGCTTTGATAATTTGATCTCAATCGATCGATTCTATTGAGAATTTGTGT 195 |||||||||||||| |||||| |||| |||||||||||||||||||||||||||||| Sbjct 116 TTCGACGAAGCTTTTATAATTAGATCACAATCGATCGATTCTATTGAGAATTTGTGT 172 Score = 89.8 bits (48), Expect = 5e-17 Identities = 55/58 (95%), Gaps = 2/58 (3%) Strand=Plus/Plus Query 1015 ATGTTCAATCTGGATTTGTTGCTCAATGACTGGGATCATCTGttttttctttgatttg 1072 ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| Sbjct 945 ATGTTCAATCTGGATTTGTTGCTCAATGAATGGGATCATCTGTTTT--CTTTGATTTG 1000 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48454227507 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5