BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G02050.1
Length=1135
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486983 jgi|Araly1|486983|fgenesh2_kg.6__117__AT5G02050.1 1365 0.0
> Ahg486983 jgi|Araly1|486983|fgenesh2_kg.6__117__AT5G02050.1
Length=1034
Score = 1365 bits (739), Expect = 0.0
Identities = 941/1033 (91%), Gaps = 35/1033 (3%)
Strand=Plus/Plus
Query 61 AACCCTAGAATCCTCAGAAATGGCGTTGAGCACCGTGTTTCGTCGAGCTTCGTCAACAGT 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 22 AACCCTAGAATCCTCAAAAATGGCGTTGAGCACCGTGTTTCGTCGAGCTTCGTCAACAGT 81
Query 121 AGCCAATCTTGCTTTCCGTGCGGGTAGATCTCCGGTTAGCTTCCGCAGTGGCGCTGTCTC 180
|||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 82 GGCCACTCTTGCTTTCCGTGCGGCTAGATCTCCGGCGAGCTTCCGCAGTGGCGCTGTCTC 141
Query 181 CGTCGAGAGGCTGATTCGTGGTAGCCACCAGATCAGGCGTGGATCGGTTAGTTCATTCTC 240
|| |||||||||||||| |||||| |||||||| ||||||||||||||||||||||||
Sbjct 142 CGCCGAGAGGCTGATTCTTGGTAG---CCAGATCATGCGTGGATCGGTTAGTTCATTCTC 198
Query 241 AGTCTCGAGCTTTTCGACGGAAAGTGCGATCTCTAAAACAACCGCCGACGAGAATCTTGT 300
| ||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 199 ATTCTCGAGGTTTTCGACGGAAAGTGCGATCTCTAAAACAACCGCCGATGAGAGTCTTGT 258
Query 301 TAGCGTTATCGAATCTGAAATCGAATGCGCCGTCGCAGAGGAGGCTCCTCATGACACTGA 360
||| ||||||||||||||||| || |||||||||| ||||||||| |||||||| ||| |
Sbjct 259 TAGAGTTATCGAATCTGAAATTGATTGCGCCGTCGAAGAGGAGGCGCCTCATGATACT-A 317
Query 361 -CTTCTTGGAAGATAAGCCAGAAGGGTTTCCATTTGAAATCATTGATAATTCAGGGGAGA 419
| |||||||||| ||||||||||||||||| ||||| || ||||||| | ||||||| |
Sbjct 318 GCATCTTGGAAGAGAAGCCAGAAGGGTTTCCTTTTGAGATTATTGATACTCCAGGGGAAA 377
Query 420 GAACTGTGTTGCTGACAAGGAAATTTGAGGATGAAACCATCCAAGTGGAAGTTGACTCTG 479
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 378 GAACTGTGTTGCTGAGAAGGAAATTTGAGGATGAAACCATCCAAGTGGTAGTTGACTCTG 437
Query 480 TTGCTTCTTatgatgatgaagatgaagaagaggaagcagaaccaaacaatgaagaagacg 539
||||||| | | ||||| ||||||||||| ||||||||||||||| |||||| |||||
Sbjct 438 TTGCTTC-T-T-ATGAT---GATGAAGAAGATGAAGCAGAACCAAACGATGAAGGAGACG 491
Query 540 atgaagatcaagagaGC-TCGGGTAAAGTCCGGGTTCCGATGGTTGTTAGTGTGCAGAAA 598
||||||||||||| ||| | ||||||| ||||||||||||||||||| |||||| |||||
Sbjct 492 ATGAAGATCAAGAAAGCGT-GGGTAAAATCCGGGTTCCGATGGTTGTGAGTGTGGAGAAA 550
Query 599 GGTGATGGTGTGTGTCTTGAGTTTGGAGTCAGCGCATACCCGGATGAGATTGTGATTGAT 658
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 551 GGTGATGGTGTCTGTCTTGAGTTTGGAGTCAGCGCATACCCTGATGAGATTGTGATTGAT 610
Query 659 AGTTTATCGATCAAACAACCGCAAGGATCTGATAATGACCTTGCTTACGAAGGACCTGAC 718
||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||
Sbjct 611 AGTTTATCGATCAAACAACCGCAAGAATCTGAGAATGAGCTTGCTTACGAAGGACCTGAC 670
Query 719 TTTGATGACTTGGATGAGAATTTGCAGAAGGCTTTCCACAGGTACTTGGAGATCAGAGGT 778
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 671 TTTGATGACTTGGATGAGAATTTGCAGAAGGCTTTCCACAGGTACTTGGAGATCAGAGGC 730
Query 779 ATTAAACCAAGCTTCACTACCTTTCTGGCAGATTATGTGGCCAACAAAGATAGCAGAGAG 838
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 731 ATTAAACCGAGCTTCACTACCTTTCTGGCAGATTATGTGGCCAACAAAGATAGCAGAGAG 790
Query 839 TATCTTCAATGGCTCAAGGATCTCAAGTCTTTTGTCGAGAAGTGAAACTGAACTTTGTTC 898
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 791 TATCTTCAATGGCTCAAGGATCTCAAGTCTTTTGTCGAGAAGTGAATCTGAACTTTGTTC 850
Query 899 AGAGAATAAGAGCGAGAT-TTCTTTTT-GCTT-TAAACTTTTGAGTTTATCTTAGATGAA 955
||| |||||||||||||| || ||||| |||| ||| | || |||||||| |||||||||
Sbjct 851 AGAAAATAAGAGCGAGATGTTTTTTTTTGCTTATAA-CATTGGAGTTTATTTTAGATGAA 909
Query 956 CTTGATATCACCATGA--G--CAATC----GTTGAAA-GTGAGGTCATGTGTTATGCTTG 1006
|||||||||||||||| | ||| | ||||||| ||| ||| ||| ||| ||||||
Sbjct 910 CTTGATATCACCATGATTGATCAAGCAATAGTTGAAAAGTGTGGTTATGAGTTGTGCTTG 969
Query 1007 TTAACAATATTGCTACATGTTTTTAATGGGTTTTTAGGTACTTTGCTAGATATAAGATGC 1066
|| |||||||||||||||||||||| || || | ||||||||||| ||||||||
Sbjct 970 TTGACAATATTGCTACATGTTTTTATTG--TT---A----CTTTGCTAGATTTAAGATGC 1020
Query 1067 AACTCTTTCGAGT 1079
|||||||||||||
Sbjct 1021 AACTCTTTCGAGT 1033
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42316437870
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5