BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G02060.1
Length=840
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486984 jgi|Araly1|486984|fgenesh2_kg.6__118__AT5G02060.1 1153 0.0
> Ahg486984 jgi|Araly1|486984|fgenesh2_kg.6__118__AT5G02060.1
Length=806
Score = 1153 bits (624), Expect = 0.0
Identities = 763/826 (92%), Gaps = 26/826 (3%)
Strand=Plus/Plus
Query 1 GCTTGAAGTTAAGGGAAACATAATTGTTCCTCCAAAAAAGCAGAATTAAATTTGTGGTAG 60
||||||||||||||||||||||||||||||| | |||| ||||||||||| |||||||||
Sbjct 1 GCTTGAAGTTAAGGGAAACATAATTGTTCCT-CTAAAACGCAGAATTAAA-TTGTGGTAG 58
Query 61 ATACTTGTTTTT-AAATTCATATAGCTCAAAAAAGTTGTCAT-TTTTAATG-TTGGTTTT 117
||| |||||||| ||||| |||||||||||||||||||| | |||||||| ||| ||||
Sbjct 59 ATAATTGTTTTTAAAATT-TTATAGCTCAAAAAAGTTGTCTTCTTTTAATGTTTGTTTTT 117
Query 118 CTGGTGGCGATGCTCTTAATTACCCAATTCCGTACGATTTATGATCATAAGTCAACTTTT 177
|||||||||||||||||||||||||||||||||| | ||| | | |||||||
Sbjct 118 CTGGTGGCGATGCTCTTAATTACCCAATTCCGTA-G------GAT--T---TAAACTTTT 165
Query 178 GAGATTTGGGTTTGTGAAATTTTCCTGAATAAAATTATGGGTTTAGGGTTTTTATGATCA 237
| | ||||||||||||||| || |||| || ||||||||||||||||||||||||||||
Sbjct 166 GTGTTTTGGGTTTGTGAAA-TTCCCTG-ATTAAATTATGGGTTTAGGGTTTTTATGATCG 223
Query 238 ATTTCCTGTAAAGTAGCGAttttt-ttCTCCCGGGGATTTTGGTGAGGAACAG-GATAGA 295
||||| |||||||||||||||||| || || | ||| ||||||| |||||||| |||||
Sbjct 224 ATTTCATGTAAAGTAGCGATTTTTATT-TCTC-GGGTTTTTGGTAAGGAACAGATATAGA 281
Query 296 AAGTCTTGGTTTTGTTCTGT-TTATTGTGTTTGTTTTTGGGTTCTGATCAATGAAGAAGA 354
|||||| |||||| |||| | || |||||||||||||| || |||||||||||||||||
Sbjct 282 AAGTCTAGGTTTTTTTCT-TCTTCTTGTGTTTGTTTTTCTGTCCTGATCAATGAAGAAGA 340
Query 355 TGATTGGGAGTCCTGGAACAATGAGTGGGTTGATACTGAGACTAGGGCAATGTGCAACTG 414
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 341 TGATTGGGAGTCCTGGAACAATGAGTGGGTTGATACTGAGATTAGGGCAATGTGCAACTG 400
Query 415 CTGCTGCTTCCATTGGTGTTATGGTTTCTTCTTACGACTTTTCCAATTACACTGCTTTCT 474
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 401 CTGCTGCTTCCATTGGTGTTATGGTTTCTTCTTACGACTTCTCTAATTACACTGCTTTCT 460
Query 475 GCTTCTTAGTCGCATCTATGGGTCTTCAATTGATATGGAGCTTTGGACTTGCGTGTCTTG 534
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 461 GCTTCTTAGTCGCATCTATGGGTCTTCAATTGATTTGGAGCTTTGGACTTGCTTGTCTTG 520
Query 535 ATGTATATGCGATAAGGAGAAAAAGTGATTTACGAAGCCCTATCTTATTGAGCCTTTTCA 594
| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 521 ACGTATATGCAATAAGGAGAAAAAGTGATTTACAAAGCCCTATCTTATTGAGCCTTTTCA 580
Query 595 CTGTTGGTGATTGGGTCACTGCACTTCTCGCTCTTGCAGCCGCGTGTTCCTCTGCAGGAG 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 581 CTGTTGGTGATTGGGTCACTGCACTTCTCGCTCTTGCAGCCGCGTGTTCCTCTGCAGGAG 640
Query 655 TTACTGTTTTATTCACTAAAGACACTGAGTTTTGCAGGCAGCAACCCGCTCTCTCTTGCG 714
|||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 641 TTACGGTTTTATTCACAAAAGACACTGAGTTTTGCAAGCAGCAACCCGCTCTCTCTTGCG 700
Query 715 ATAGGTTTCAGATTTCTGTTGGTTTATCTTTCTTTAATTGGTTTTTAGCTGCTATATCGT 774
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 701 ATAGGTTTCAGATTTCTGTCGGTTTATCTTTCTTTAATTGGTTTTTAGCTGCTATATCAT 760
Query 775 CTCATACCATGTTTTGGATCTTGATATGATATCAAACAAAACCCAT 820
|||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 761 CTCATACCATGTTTTGGATCTTGATATGATATTAAACAAAACCCAT 806
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31070177355
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5