BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G02090.1
Length=668
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939584 jgi|Araly1|939584|scaffold_600128.1 374 6e-103
> Ahg939584 jgi|Araly1|939584|scaffold_600128.1
Length=301
Score = 374 bits (202), Expect = 6e-103
Identities = 274/307 (89%), Gaps = 11/307 (4%)
Strand=Plus/Plus
Query 69 GATTGCAGAGATTTAAAAAGAAAATGGAGGGTTTGATTCCATTTTTGTACAAAGCCATTG 128
|||| |||||| || ||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 1 GATTTCAGAGA-TT-AAAAG-AAATGGAAGGTTTGATTCCATTTTTGTACAAAGCCATTG 57
Query 129 TTATGTATAAAAGAGAAGGAAGCTTTTCGTCGGTTTTGCTCAGCGATCATCACTCTCCTT 188
|||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||
Sbjct 58 TTATGTATAAAAGAGAAGGAAGTTTTTCGTCGGTTTTGCTAAGCGACCATCACTCTCCTT 117
Query 189 CTAACGCCGGTTATTACATGCGACTTCCTGGCGACTCGTCTAGTAGGTTTCGAACGTCCG 248
||||| |||||||||||||||||||||| |||||||| || | |||||||||||||| |
Sbjct 118 CTAACACCGGTTATTACATGCGACTTCCCGGCGACTCCTCCGGCAGGTTTCGAACGTCTG 177
Query 249 ATCTCCG-ACGATTTGGGACGGACCGTTTTGGAATGCTCGAAACGACGCCGTCATCTTCG 307
||| ||| | ||||||||||||| ||| ||||| | || ||||| |||||||| ||||||
Sbjct 178 ATCGCCGGA-GATTTGGGACGGATCGTCTTGGATTACTTGAAACAACGCCGTCCTCTTCG 236
Query 308 CCTTCTCGTGTTTCCACTAGGAACAT---CACCAAACGTACGTAAGGACGACTGATGATC 364
|| |||||||| |||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 237 CCGTCTCGTGTGTCCACTAGGAACATGATCACCAAACGTACGTAAGGAC---TGATGATC 293
Query 365 GATATAC 371
|||||||
Sbjct 294 GATATAC 300
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24513035631
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5