BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G02100.1
Length=1690
Score E
Sequences producing significant alignments: (Bits) Value
Ahg324883 jgi|Araly1|324883|fgenesh1_pm.C_scaffold_6000103 2204 0.0
Ahg478245 jgi|Araly1|478245|fgenesh2_kg.3__946__AT3G09300.1 1391 0.0
Ahg340891 jgi|Araly1|340891|fgenesh1_pg.C_scaffold_3000654 616 2e-175
Ahg939586 jgi|Araly1|939586|scaffold_600130.1 372 5e-102
Ahg887791 jgi|Araly1|887791|Al_scaffold_0658_1 337 2e-91
> Ahg324883 jgi|Araly1|324883|fgenesh1_pm.C_scaffold_6000103
Length=1362
Score = 2204 bits (1193), Expect = 0.0
Identities = 1305/1361 (96%), Gaps = 0/1361 (0%)
Strand=Plus/Plus
Query 120 ATGGCTTCTAACGATCCAAAAAACGGCGGCGGTTTCTTCGCCTCTCTTGCTTCATCCATC 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTTCTAACGATCCAAAAAACGGCGGCGGTTTCTTCGCCTCTCTTGCTTCATCCATC 60
Query 180 ACCAATTTCGGATCGGCCATGAGTAAATCAGTGAACGGTTTGATGGGATATGAAGGGCTT 239
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 61 ACCAATTTCGGATCGGCCATGAGCAAATCAGTGAACGGTTTGATGGGTTATGAAGGGCTT 120
Query 240 GAAGTGATTAATCCAGAAGGAAGTACAGACGATGCAGAGGAAGAAGCAGGGAGAGGAAGA 299
||||||||||||||||| ||| ||||||| ||||||||||| |||||||| |||||||||
Sbjct 121 GAAGTGATTAATCCAGAGGGAGGTACAGAAGATGCAGAGGAGGAAGCAGGAAGAGGAAGA 180
Query 300 TGGAAGCAAGAGGAACGTGATGGCTATTGGAAGATGATGCAGAAGTATATAGGGTCTGAT 359
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 181 TGGAAGCAAGAGGAACGTGATGGTTACTGGAAGATGATGCAGAAGTATATAGGGTCTGAT 240
Query 360 GTTACATCTATGGTTACTCTTCCTGTGATCATTTTTGAACCCATGACAATGTTGCAGAAA 419
|||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 241 GTTACATCTATGGTGACTCTTCCTGTGATTATTTTTGAACCCATGACAATGCTGCAGAAA 300
Query 420 ATGGCTGAGTTGATGGAATACTCATATTTGCTAGACATGGCTGACAAAACTGAAGATCCT 479
||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 301 ATGGCTGAGTTGATGGAATACTCGCATCTGCTAGACATGGCTGACAAAACTGAAGATCCT 360
Query 480 TACATGCGTATGGTATATGCATCATCATGGGCTATATCTGTGTATTACGCCTACCAGCGT 539
|||||||||||||||||||||||||||||||||||||| ||||| || || |||||||||
Sbjct 361 TACATGCGTATGGTATATGCATCATCATGGGCTATATCGGTGTACTATGCTTACCAGCGT 420
Query 540 ACCTGGAAGCCGTTCAATCCAATTCTCGGTGAGACTTATGAGATGACTAATCATAATGGG 599
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 421 ACCTGGAAGCCGTTCAATCCAATTCTCGGTGAGACTTACGAGATGACTAATCATAATGGG 480
Query 600 ATCAATTTTATAGCTGAACAGGTCTGCCATCACCCACCAATGAGTGCTGGTCATGCTGAA 659
||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||
Sbjct 481 ATCAATTTTATAGCTGAACAGGTTTGCCATCACCCACCAATGAGTGCTGGTCACGCAGAA 540
Query 660 AACGAGCATTTCGCTTACGATTGCACTTCAAAACTGAAAACGAAATTCCTAGGCAACTCA 719
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 541 AACGAGCATTTCGCTTACGATTGCACTTCAAAACTGAAAACGAAATTCTTGGGCAACTCA 600
Query 720 ATTGATGTCTACCCAGTAGGAAGGACACGAGTGACACTTAAAAGAGATGGTGTCGTTCTT 779
||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 601 ATTGACGTCTACCCAGTAGGAAGGACCCGAGTGACACTTAAAAGAGATGGTGTGGTTCTT 660
Query 780 GATCTTGTACCTCCACTGACAAAGGTTCATAACCTTATCTTCGGTCGAACATGGGTCGAT 839
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 661 GATCTTGTACCTCCCCTGACAAAGGTTCATAACCTTATCTTTGGTCGAACATGGGTAGAT 720
Query 840 TCGCCAGGAGAGATGGTCATGACGAACCTGACCACTGGTGACAAAGTGGTGCTTTACTTT 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TCGCCAGGAGAGATGGTCATGACGAACCTGACCACTGGTGACAAAGTGGTGCTTTACTTT 780
Query 900 CAACCATGTGGCTGGTTTGGATCTGGACGATATGAAGTGGACGGTTACGTGTATAATTCA 959
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 781 CAACCATGCGGCTGGTTTGGATCTGGACGTTATGAAGTGGACGGTTACGTGTATAATTCA 840
Query 960 GCTGAAGAGCCCAAGATGCTAATGACCGGAAAATGGAACGAGTCCTTGAGTTATCAGCCA 1019
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 841 GCTGAAGAGCCCAAGATGCTAATGACCGGTAAATGGAACGAGTCCTTGAGTTATCAGCCA 900
Query 1020 TGTGATGCGGAAGGCGAACCTCTTCCAGGCACCGAACTGAAGGAGGTGTGGAAGGTTGCT 1079
||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 901 TGTGATGTGGAAGGCGAACCTCTTCCAGGCACCGAACTGAAGGAGGTATGGAAGGTCGCG 960
Query 1080 GAAGCTCCAAAGAACGATAAATACCAATACACACATTTTGCTCACAAGATCAATAGTTTT 1139
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 961 GAAGCTCCAAAGAACGATAAATTCCAATACACACATTTCGCTCACAAGATCAATAGTTTT 1020
Query 1140 GACACTGCCCCTAAAAAGCTACTGTCATCTGATTCACGTCTACGTCCTGATAGATACGCG 1199
|||||||| |||||||| ||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1021 GACACTGCTCCTAAAAATCTACTGTCATCTGATTCTCGTCTACGTCCAGATAGATACGCG 1080
Query 1200 CTGGAGATGGGTGATATGTCCAAATCTGGATTCGAAAAGAGCAGCCTAGAGGATAGACAA 1259
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1081 CTTGAGATGGGTGATATGTCCAAATCTGGATTTGAAAAGAGCAGCCTAGAGGATAGACAA 1140
Query 1260 AGAGCTGAGAAGAAAAGCAGAGAAGAGAAAGGCCAAAAATTTGCTCCAAAATGGTTTGAT 1319
||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 1141 AGAGCTGAGAAGAGAAGCCGAGAAGAGAAAGGCCAAAGATTTGCTCCAAAATGGTTTGAT 1200
Query 1320 GAAACAGAAGAAGTCACTCCTACACCATGGGGTGATCTCGAAGTTTACCAATTCAATGGA 1379
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1201 GAAACAGAGGAAGTCACTCCTACACCATGGGGTGATCTCGAAGTGTACCAATTCAATGGA 1260
Query 1380 AAGTACTCGGTGCACCGCGCCACAGCTGAAAACTCTGAGGATACAACCGATGTGAAGTTG 1439
|||||||||||||||||||||||||| || ||| ||||||||||||| ||||||||| ||
Sbjct 1261 AAGTACTCGGTGCACCGCGCCACAGCCGATAACCCTGAGGATACAACGGATGTGAAGGTG 1320
Query 1440 ACCCAATTCAACCCTTGGCAATTCCAAGATCTCTCTGCTTA 1480
|||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 ACCCAATTCAACCCTTGGCAATTCCAAGATCTCTCTGCTTA 1361
> Ahg478245 jgi|Araly1|478245|fgenesh2_kg.3__946__AT3G09300.1
Length=1721
Score = 1391 bits (753), Expect = 0.0
Identities = 1149/1342 (86%), Gaps = 20/1342 (1%)
Strand=Plus/Plus
Query 150 GGTTTCTTCGCCTCTCTTGCTTCATCCATCACCAATTTCGGATCGGCCATGAGTAAATCA 209
||||||||||| ||||||||||| || ||| ||||||| ||||| || |||| ||||||
Sbjct 261 GGTTTCTTCGCTTCTCTTGCTTCTTCGATCTCCAATTTGGGATCTGCTATGACCAAATCA 320
Query 210 GTGAACGGTTTGATGGGATATGAAGGGCTTGAAGTGATTAATCCAGAAGGAAGTACAGAC 269
|| || |||||| | ||||| ||||||||||| || ||||| ||||||||||||||
Sbjct 321 GTTAATGGTTTGGTTCCCTATGAGGGGCTTGAAGTTATCAATCCCGAAGGAAGTACAGAT 380
Query 270 GATGCAGAGGAAGAAGCAGGGAGAGGAAGATGGAAGCAAGAGGAACGTGATGGCTATTGG 329
||||||||||| |||||| | ||||||||||||||||||||||| || ||||| ||||||
Sbjct 381 GATGCAGAGGAGGAAGCAAGCAGAGGAAGATGGAAGCAAGAGGATCGAGATGGGTATTGG 440
Query 330 AAGATGATGCAGAAGTATATAGGGTCTGATGTTACATCTATGGTTACTCTTCCTGTGATC 389
||||||||||||||||| ||||| |||||||||||||| ||||| || |||||||||||
Sbjct 441 AAGATGATGCAGAAGTACATAGGATCTGATGTTACATCAATGGTGACCCTTCCTGTGATT 500
Query 390 ATTTTTGAACCCATGACAATGTTGCAGAAAATGGCTGAGTTGATGGAATACTCATATTTG 449
||||||||||| ||||||||| | ||||||||||| ||||||||||||||||| || |
Sbjct 501 ATTTTTGAACCAATGACAATGCTCCAGAAAATGGCAGAGTTGATGGAATACTCGCATCTC 560
Query 450 CTAGACATGGCTGACAAAACTGAAGATCCTTACATGCGTATGGTATATGCATCATCATGG 509
||||||||||| ||||||||||| || ||||| ||||| ||||| |||||||||||||||
Sbjct 561 CTAGACATGGCAGACAAAACTGAGGACCCTTATATGCGCATGGTGTATGCATCATCATGG 620
Query 510 GCTATATCTGTGTATTACGCCTACCAGCGTACCTGGAAGCCGTTCAATCCAATTCTCGGT 569
|||||||| |||||||| || | ||| ||||||||||| || ||||||||||| ||||||
Sbjct 621 GCTATATCCGTGTATTATGCTTTCCAACGTACCTGGAAACCATTCAATCCAATCCTCGGT 680
Query 570 GAGACTTATGAGATGACTAATCATAATGG-GATCAATTTTATAGCTGAACAGGTCTGCCA 628
||||||||||||||| ||||| | ||||| | | || || ||| ||||||||||| ||||
Sbjct 681 GAGACTTATGAGATGGCTAATTACAATGGTG-TTAACTTCATATCTGAACAGGTCAGCCA 739
Query 629 TCACCCACCAATGAGTGCTGGTCATGCTGAAAACGAGCATTTCGCTTACGATTGCACTTC 688
||||||||||||||||||||||||||||||||| |||||||| | || ||||| |||||
Sbjct 740 TCACCCACCAATGAGTGCTGGTCATGCTGAAAATGAGCATTTTACGTATGATTGTACTTC 799
Query 689 AAAACTGAAAACGAAATTCCTAGGCAACTCAATTGATGTCTACCCAGTAGGAAGGACACG 748
|||||||||||| ||||| || || || || ||||| || ||||||||||||||||||||
Sbjct 800 AAAACTGAAAACAAAATTTCTGGGAAATTCCATTGACGTTTACCCAGTAGGAAGGACACG 859
Query 749 AGTGACACTTAAAAGAGATGGTGTCGTTCTTGATCTT-GTACCTCCACTGA-CAAAGGTT 806
|||||||||||||||||||| || |||||||| ||| |||||||| |||| |||| |||
Sbjct 860 GGTGACACTTAAAAGAGATGGAGTTGTTCTTGA-CTTGGTACCTCCTCTGACCAAA-GTT 917
Query 807 CATAACCTTATCTTCGGTCGAACATGGGTCGATTCGCCAGGAGAGATGGTCATGACGAAC 866
|| ||||| ||||| || ||||| |||||||||||||| || || ||| ||||||| |||
Sbjct 918 CACAACCTAATCTTTGGACGAACTTGGGTCGATTCGCCTGGGGAAATGATCATGACAAAC 977
Query 867 CTGACCACTGGTGACAAAGTGGTGCTTTACTTTCAACCATGTGGCTGGTTTGGATCTGGA 926
|||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 978 CTGACCACCGGTGACAAAGTTGTGCTTTACTTTCAACCATGTGGCTGGTTCGGATCTGGT 1037
Query 927 CGATATGAAGTGGACGGTTACGTGTATAATTCAGCTGAAGAGCCCAAGATGCTAATGACC 986
|||||||||||||| || || || ||||| | |||| ||||| ||||| || |||||
Sbjct 1038 CGATATGAAGTGGATGGATATGTCTATAACGCCTCTGAGGAGCCTAAGATACTCATGACT 1097
Query 987 GGAAAATGGAACGAGTCCTTGAGTTATCAGCCATGTGATGCG-GAAGGCGAACCTCTTCC 1045
|| ||||||||||||||| ||||||||||||| ||||| | | ||||| |||||||| ||
Sbjct 1098 GGCAAATGGAACGAGTCCATGAGTTATCAGCCGTGTGACG-GTGAAGGTGAACCTCTCCC 1156
Query 1046 AGGCACCGAACTGAAGGAGGTGTGGAAGGTTGCTGAAGCTCCAAAGAACGATAAATACCA 1105
||||||||||||||| ||||| ||||| | ||||| | ||||||| | || ||||||||
Sbjct 1157 AGGCACCGAACTGAAAGAGGTATGGAAACTCGCTGATGTTCCAAAGGATGACAAATACCA 1216
Query 1106 ATACACACATTTTGCTCACAAGATCAATAGTTTTGACACTGCCCCTAAAAAGCTACTGTC 1165
||||||||| ||||||||||||||||||||||| ||||||||||| |||||||| || |
Sbjct 1217 ATACACACACTTTGCTCACAAGATCAATAGTTTCGACACTGCCCCGAAAAAGCTGTTGCC 1276
Query 1166 ATCTGATTCAC-GTCTACGTCCTGATAGATACGCGCTGGAGATGGGTGATATGTCCAAAT 1224
|||||||||| || |||| |||||||||||||| || |||||||| || ||||||||||
Sbjct 1277 GTCTGATTCACGGT-TACGACCTGATAGATACGCACTTGAGATGGGCGACATGTCCAAAT 1335
Query 1225 CTGG-ATTCGA-AAAGAGCAGCCTAGAGGATAGACAAAGAGCTGAGAAGAAAAGCAGAGA 1282
| || | | || ||| |||||| | || || ||||| |||||||| |||| || | | ||
Sbjct 1336 CAGGCAAT-GAGAAA-AGCAGCATGGAAGAGAGACAGAGAGCTGAAAAGAGAACCCGCGA 1393
Query 1283 AGAGAAAGGCCAAAAATTTGCTCCAAAATGGTTTGATGAAACAGAAGAAGTCACTCCTAC 1342
||||||||||||| ||| |||| |||||||| |||| ||| |||||||||||| ||||
Sbjct 1394 AGAGAAAGGCCAAGGCTTTACTCCTAAATGGTTCGATGTAACGGAAGAAGTCACTGCTAC 1453
Query 1343 ACCATGGGGTGATCTCGAAGTTTACCAATTCAATGGAAAGTACTCGGTGCACCGCGCCA- 1401
||||||||||||||||||||||||||||||||||||||||||||||| ||| || || |
Sbjct 1454 ACCATGGGGTGATCTCGAAGTTTACCAATTCAATGGAAAGTACTCGGAGCATCGTGC-AG 1512
Query 1402 CAGCTGAAAACTCTGAGGATA-CAACCGATG-TGAAGTTGACCCAATTCAACCCTTGGCA 1459
| || || |||||||| |||| || | || | |||| || |||||||||||| |||||
Sbjct 1513 CTGCCGATAACTCTGAAGATAACA-CTGACCCT-AAGTCGATCCAATTCAACCCATGGCA 1570
Query 1460 ATTCCAAGATCTCTCTGCTTAA 1481
||| |||||||| ||| |||||
Sbjct 1571 ATTTCAAGATCTGTCTACTTAA 1592
> Ahg340891 jgi|Araly1|340891|fgenesh1_pg.C_scaffold_3000654
Length=939
Score = 616 bits (333), Expect = 2e-175
Identities = 381/404 (94%), Gaps = 3/404 (1%)
Strand=Plus/Plus
Query 307 AAGAGGAACGTGATGGCTATTGGAAGATGATGCAGAAGTATATAGGGTCTGATGTTACAT 366
|||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 530 AAGATGAACGTGATGGTTACTGGAAGATGATGCAGAAGTATATAGGGTCTGATGTTACAT 589
Query 367 CTATGGTTACTCTTCCTGTGATCATTTTTGAACCCATGACAATGTTGCAGAAAATGGCTG 426
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 590 CTATGGTGACTCTTCCTGTGATCATTTTTGAACCTATGACAATGTTGCAGAAAATGGCTG 649
Query 427 AGTTGATGGAATACTCATATTTGCTAGACATGGCTGACAAAACTGAAGATCCTTACATGC 486
|||||||||||||||| || || | |||||||||||||||||||||||||||||||||
Sbjct 650 AGTTGATGGAATACTCGCATCTGGTGGACATGGCTGACAAAACTGAAGATCCTTACATGA 709
Query 487 GTATGGTATATGCATCATCATGGGCTATATCTGTGTATTACGCCTACCAGCGTACCTGGA 546
|||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||
Sbjct 710 GTATGGTATATGCATCATCATGGGCTATCTCTGTGTATTATGCTTACCAGCGTACCTGGA 769
Query 547 AGCCGTTCAATCCAATTCTCGGTGAGACTTATGAGATGACTAATCATAATGGGATCAATT 606
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 770 AGCCGTTCAATCCAATTCTCGGTGAGACTTACGAGATGACTAATCATAATGGGATCAATT 829
Query 607 TTATAGCTGA---ACAGGTCTGCCATCACCCACCAATGAGTGCTGGTCATGCTGAAAACG 663
|||||||||| ||||| ||||||||||||||||||||||||||||| || ||||||
Sbjct 830 TTATAGCTGATCTGCAGGTTTGCCATCACCCACCAATGAGTGCTGGTCACGCAAAAAACG 889
Query 664 AGCATTTCGCTTACGATTGCACTTCAAAACTGAAAACGAAATTC 707
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 AGCATTTCGCTTACGATTGCACTTCAAAACTGAAAACGAAATTC 933
> Ahg939586 jgi|Araly1|939586|scaffold_600130.1
Length=820
Score = 372 bits (201), Expect = 5e-102
Identities = 236/252 (94%), Gaps = 5/252 (2%)
Strand=Plus/Plus
Query 1254 AGACAAAGAGCTGAGAAGAAAAG-C---AGAGAAGAGAAAGGCCAAAAATTTGCTCCAAA 1309
||||||||||||||||||| ||| | |||||||||||||| |||| ||||||||||||
Sbjct 569 AGACAAAGAGCTGAGAAGAGAAGCCGATAGAGAAGAGAAAGGGCAAATATTTGCTCCAAA 628
Query 1310 ATGGTTTGATGAAACAGAAGAAGTCACTCCTACACCATGGGGTGATCTCGAAGTTTACCA 1369
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 629 ATGGTTTGATGAAACAGAGGAAGTCACTCCTACACCATGGGGTGATCTCGAAGTGTACCA 688
Query 1370 ATTCAATGGAAAGTACTCGGTGCACCGCGCCACAGCTGAAAACTCTGAGGATACAACCGA 1429
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||
Sbjct 689 ATTCAATGGAAAGTACTCGGTGCACCGCGCCACAGCCGATAACTCTGAGGATACAACGGA 748
Query 1430 TGTGAAGTTGACCCAATTCAACCCTTGGCAATTCCAAGATCTCTCTGCTTAATCCTTTGG 1489
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 749 TGTGAAGGTGACCCAATTCAACCCTTGGCAATTCCAAGATCTCTCTGCTTAATCCTCGGG 808
Query 1490 -TGCCATTTGTT 1500
|||||||||||
Sbjct 809 GTGCCATTTGTT 820
> Ahg887791 jgi|Araly1|887791|Al_scaffold_0658_1
Length=645
Score = 337 bits (182), Expect = 2e-91
Identities = 218/234 (93%), Gaps = 8/234 (3%)
Strand=Plus/Plus
Query 1254 AGACAAAGAGCTGAGAAGAAAAG-C-A--GAGAAGAGAAA-GGCCAAAAATTTGCTCCAA 1308
||||||||||||||||||| ||| | | ||||||||||| || |||| |||||||||||
Sbjct 414 AGACAAAGAGCTGAGAAGAGAAGCCGATCGAGAAGAGAAACGG-CAAAGATTTGCTCCAA 472
Query 1309 AATGGTTTGATGAAACAGAAGAAGTCACTCCTACACCATGGGGTGATCTCGAAGTTTACC 1368
||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||
Sbjct 473 AATGGTTTGATGAAACAGAGGAAGTCACTCCTACACCATGGGGTGATCTCCAAGTGTACC 532
Query 1369 AATTCAATGGAAAGTACTCGGTGCACCGCGCCACAGCTGAAAACTCTGAGGATACAACCG 1428
||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||
Sbjct 533 AATTCAATGGAAAGTACTCGGTGCACCGCGCCACAGCGGATAACTCTGAGGATACAA-CG 591
Query 1429 -ATGTGAAGTTGACCCAATTCAACCCTTGGCAATTCCAAGATCTCTCTGCTTAA 1481
|||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 592 AATGTGAAGTTGAACCAATTCAACCCTTGGCAATTCCAAGATCTCTCTGCTTAA 645
Score = 303 bits (164), Expect = 2e-81
Identities = 186/197 (94%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 420 ATGGCTGAGTTGATGGAATACTCATATTTGCTAGACATGGCTGACAAAACTGAAGATCCT 479
||||||||||||||||||||||| || || | |||||||||||||||| ||||||||||
Sbjct 1 ATGGCTGAGTTGATGGAATACTCGCATCTGGTGGACATGGCTGACAAAAATGAAGATCCT 60
Query 480 TACATGCGTATGGTATATGCATCATCATGGGCTATATCTGTGTATTACGCCTACCAGCGT 539
|||||| |||||||||||||||||||||||||||| ||||||||||| || |||||||||
Sbjct 61 TACATGAGTATGGTATATGCATCATCATGGGCTATCTCTGTGTATTATGCTTACCAGCGT 120
Query 540 ACCTGGAAGCCGTTCAATCCAATTCTCGGTGAGACTTATGAGATGACTAATCATAATGGG 599
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 121 ACCTGGAAGCCGTTCAATCCAATTCTCGGTGAGACTTACGAGATGACTAATCATAATGGG 180
Query 600 ATCAATTTTATAGCTGA 616
|||||||||||||||||
Sbjct 181 ATCAATTTTATAGCTGA 197
Score = 226 bits (122), Expect = 4e-58
Identities = 130/134 (97%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 743 GACACGAGTGACACTTAAAAGAGATGGTGTCGTTCTTGATCTTGTACCTCCACTGACAAA 802
||| |||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||
Sbjct 237 GACCCGAGTGACACTTAAAAGAGATGGTGTGGTTCTTGATCTTATACCTCCCCTGACAAA 296
Query 803 GGTTCATAACCTTATCTTCGGTCGAACATGGGTCGATTCGCCAGGAGAGATGGTCATGAC 862
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GGTTCATAACCTTATCTTCGGTCGAACATGGGTCGATTCGCCAGGAGAGATGGTCATGAC 356
Query 863 GAACCTGACCACTG 876
||||||||||||||
Sbjct 357 GAACCTGACCACTG 370
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63382167680
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5