BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G02110.1
Length=1204
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939587 jgi|Araly1|939587|scaffold_600131.1 1327 0.0
> Ahg939587 jgi|Araly1|939587|scaffold_600131.1
Length=1066
Score = 1327 bits (718), Expect = 0.0
Identities = 964/1079 (89%), Gaps = 32/1079 (3%)
Strand=Plus/Plus
Query 45 TCAAACCGGTTCAGTTTCCAAATGGATAATCTACTCTGCGAAGAATCTTGGCCCGCGAGT 104
|||| ||||||||| | | ||||||||||||||||||||||||| || |||||| |||||
Sbjct 1 TCAAGCCGGTTCAG-TGCGAAATGGATAATCTACTCTGCGAAGAGTCATGGCCCTCGAGT 59
Query 105 CCTTTAACCCCGGAGCCTTTACCAAACTTCCGTCACCGTTCTCACGACAATGACGTCGTG 164
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 60 CCTTTAACCCCGGAGCCTTTACCAAACTTCCGTCACAGTTCTCACGACAATGACGTCGTG 119
Query 165 AAGATGTATCCAGAGATAGACGCAGCGACGATGGAGGAAGCCATTGCTATGGACTTAGAG 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GCGATGTATCCAGAGATAGACGCAGCGACGATGGAGGAAGCCATTGCTATGGACTTAGAG 179
Query 225 AAAGAATTATGTTTTAACAATCATGGAGACAAGTTTGTTGAGTTTTTCGTCTCAAAGAAG 284
||||| |||||||||| ||| ||||||||||||||||||| ||||||||||| ||||||
Sbjct 180 AAAGAGTTATGTTTTAGTAATTATGGAGACAAGTTTGTTGAATTTTTCGTCTCTAAGAAG 239
Query 285 TTAACCGATTATAGGTTCCATG-CGTTTCAATGGCTAATCCAGACTCGGAGTCGGCTAAA 343
||||||||||||||||| || | || ||||||||||||||||||||||||||||||||||
Sbjct 240 TTAACCGATTATAGGTTTCAAGCCG-TTCAATGGCTAATCCAGACTCGGAGTCGGCTAAA 298
Query 344 TCTTTCATATGAAACGGTATTTTCCGCCGCT-AATTGTTTTGATCGGTTCGTCTACATGA 402
|||||||| |||||||||||||||||||| | ||||||||||||||||||||||| ||||
Sbjct 299 TCTTTCATTTGAAACGGTATTTTCCGCCG-TAAATTGTTTTGATCGGTTCGTCTATATGA 357
Query 403 CTTGCTGTGACGAATGGACGAATTGGATGGTGGAACTAGTTGCGGTAACTTCATTATCGA 462
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 CTTGTTGTGACGAATGGACGAATTGGATGGTGGAACTAGTTGCGGTAACTTCATTATCGA 417
Query 463 TCGCATCAAAGTTCAATGAAGTTACCACTCCATTACTCGAAGAACTTGAAATGGAAGGTT 522
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 418 TCGCATCAAAGTTCAATGAAGTTACAACCCCATTACTCGAAGAACTTGAAATGGAAGGTT 477
Query 523 TAACTCATATGTTTCACGTTAATACAGTTGCT-CAGATGGAACTCATAATTTTGAAAGCT 581
||||||||||||||||||| ||||| ||| || ||||||||||| |||||||||||||||
Sbjct 478 TAACTCATATGTTTCACGTCAATACTGTT-CTTCAGATGGAACTTATAATTTTGAAAGCT 536
Query 582 CTCGAATGGCGTGTGAACGCGGTTACGAGTTATACTTTTTCGCAAACCCTTGTGTCGAAG 641
|||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||| |
Sbjct 537 CTCGAATGGCGTGTAAACTCGGTTACGAGTTATTCTTTTTCGCAAACCCTTGTGTCGAGG 596
Query 642 ATCGGTATGGTTGGGGATCATATGATCATGAATCGAATTACAAATCATCTGCTTGA-TG- 699
|| ||| |||| |||||| | ||||| ||||||||||||||||||||| || | || ||
Sbjct 597 ATTGGTGTGGTAGGGGATTACATGATGATGAATCGAATTACAAATCATTTGAT-GAATGA 655
Query 700 TTATATGCGATTTAAAAATGCTTCAATACCCACCAAGCGTTGTGGCCA-CTGCTGCTATA 758
|| |||||||||| || || |||||||| ||||||||||||||||| | |||| |||||
Sbjct 656 TT-TATGCGATTTGAAGATTCTTCAATATCCACCAAGCGTTGTGGC-AGCTGCGGCTATG 713
Query 759 TGGA-T-T-CTC-ATGGAAGACAAGGTGTGTCGAGA-AAGTATCATGAATCTCTTTGAAC 813
| || | | || ||| |||| |||| || ||| || ||||||||| ||||||| ||
Sbjct 714 TTGAATGTTCTGGATG-AAGA-AAGGC-TGAA-AGATAA-TATCATGAAACTCTTTGGAC 768
Query 814 AA-AATCATAAGGAAAAAATCGTGAAATGTGTTGATGGGATGAAAAATCGAGACATTGAT 872
|| || || ||||||||||| | ||||||||| || | ||||||||||||| ||| |||
Sbjct 769 AAGAA-CAAAAGGAAAAAATTGAGAAATGTGTCGAAGTGATGAAAAATCGAAACAGCGAT 827
Query 873 CATCAGTCGTCGAGAAGAAGATACA-GTGAAGGGAGGAGTATTCTGAG-TCTGTTGCAGC 930
||||| | ||| | ||||| || || ||||||||| ||||||| |||| | ||||||||
Sbjct 828 CATCAATTGTCTATAAGAACAT-CATGTGAAGGGAAGAGTATTTTGAGGT-TGTTGCAGA 885
Query 931 GAGGCGATGTGATGAATATGAATGGGGATTATAACGTTGAA-GATCTCTCTAAAATCTTT 989
|||| ||||||||||| ||||||| || |||||||||||| | |||||||||||| |||
Sbjct 886 GAGGTGATGTGATGAACATGAATGATGACTATAACGTTGAAAG-TCTCTCTAAAATATTT 944
Query 990 CAGATTTTCCGATACGAAAAGAAGAAGAGGGATAGAGGAAACCACCAAGACAACATTCGT 1049
|||||||||||||||||||| |||||||| || |||| ||||||||||||||||||||||
Sbjct 945 CAGATTTTCCGATACGAAAACAAGAAGAGAGACAGAGCAAACCACCAAGACAACATTCGT 1004
Query 1050 CCGGCAAAAAGAATGACAATTGAAATGTCAAATTACATTTAGCATTTTATGAAA-GAAG 1107
|||||||||||||||||| ||| |||||||| ||||||||||| |||| |||| ||||
Sbjct 1005 CCGGCAAAAAGAATGACATTTGTTATGTCAAACTACATTTAGCACTTTACGAAAAGAAG 1063
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44946919143
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5