BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G02120.1

Length=526
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg939588 jgi|Araly1|939588|scaffold_600132.1                        518    2e-146


> Ahg939588 jgi|Araly1|939588|scaffold_600132.1
Length=373

 Score =  518 bits (280),  Expect = 2e-146
 Identities = 334/360 (93%), Gaps = 3/360 (1%)
 Strand=Plus/Plus

Query  49   AAATAATGAGCTCGTCGCCGTTATCTTCATCTCTCTTTCATCCTCTGTCGACCTTGTCGA  108
            ||| ||||||||||||||||||||| |||||| |||||||||| || |||||||||||| 
Sbjct  17   AAA-AATGAGCTCGTCGCCGTTATCGTCATCTTTCTTTCATCCGCTTTCGACCTTGTCGG  75

Query  109  CTCATTGCCATGGTCGGAGACAGAACCTCTGTTTCAATCGGAAGCAACAACCTTTCGTTG  168
            ||||  ||||||||||||| |||||| ||||||||| ||| ||||||||| || ||||||
Sbjct  76   CTCAAGGCCATGGTCGGAGGCAGAACTTCTGTTTCAGTCGTAAGCAACAATCTGTCGTTG  135

Query  169  TCAGAGCCGCAAAACTTCCTGAAGGGGTGATAGTGCCAAAAGCACAACCCAAATCTCAAC  228
            || ||||||| |||||||||||||| |||||| ||||||||| |||||||||||||||||
Sbjct  136  TCCGAGCCGCCAAACTTCCTGAAGGAGTGATATTGCCAAAAGTACAACCCAAATCTCAAC  195

Query  229  CTGCGTTTCTGGGATTCACACAAACAGCTGAGATATGGAACTCACGAGCTTGCATGATTG  288
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  196  CTGCGTTTCTGGGATTCACACAAACAGCTGAGATATGGAACTCAAGAGCTTGCATGATTG  255

Query  289  GTCTCATCGGTACTTTCATCGTCGAACTGATTCTGAACAAGGGAATACTTGAACTGATCG  348
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  256  GTCTCATCGGTACTTTCATCGTCGAACTGATTCTGAACAAGGGAATACTTGAAGTGATCG  315

Query  349  GTGTAGAGATTGGGAAAGGACTCGATCTTCCTCTATAATGTATATCACTGTTTGTGTTCT  408
            ||||||||||||||||||| || ||||||||||||||||||| | |||||| ||||||||
Sbjct  316  GTGTAGAGATTGGGAAAGGGCTTGATCTTCCTCTATAATGTA-A-CACTGTGTGTGTTCT  373



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19154105678


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5