BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G02130.1 Length=1426 Score E Sequences producing significant alignments: (Bits) Value Ahg486989 jgi|Araly1|486989|fgenesh2_kg.6__123__AT5G02130.1 2124 0.0 > Ahg486989 jgi|Araly1|486989|fgenesh2_kg.6__123__AT5G02130.1 Length=1351 Score = 2124 bits (1150), Expect = 0.0 Identities = 1259/1312 (96%), Gaps = 6/1312 (0%) Strand=Plus/Plus Query 37 TCTGAGCAAGACAAGAAAAAAGAAG-ATATTGAGCGATTATGATTCGCGCAGCTGCCAAA 95 ||||| |||||||||||||||| || | |||||||||||||||||||||| ||| ||||| Sbjct 1 TCTGAACAAGACAAGAAAAAAG-AGTAAATTGAGCGATTATGATTCGCGCGGCTACCAAA 59 Query 96 -TTCTCCAGAGAAGCAGCGGCAACGATTCGTGGCCGCACGATCTCCGTTAGAGGAAACCT 154 || || |||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 60 GTT-TCAAGAGCAGCAGCGGCAACGATTCGTGGCCGCACGATCTCCGTTAGAGGAAACCT 118 Query 155 TATTCGATACTCGACGCCATTGAGATTGATTCACGGTGAAATCAGCGTTCCAAACGCGAA 214 |||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||| Sbjct 119 TATTAGATACTCGACGCCACTGAGATTGATTCACGGTGAAATCAGTGTTCCAAACGCGAA 178 Query 215 TCATGTTGCTATTCAGATGGTTAATTACGCTCTTTCTCACGCTAGGTCACAAAAATCAGA 274 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 179 TCATGTTGCTATTCAGATGGTTAATTACGCTCTTTCTCACGCTAGGTCACAAAAATCAGA 238 Query 275 TGAATCTTATGCTCAAGGGATGCTAGTGCTTGAGCAGTGTCTTGGGAATCAACCTAACGA 334 ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| Sbjct 239 TGAATCTTATGCTCAAGGGATGCTAGTGCTTGAACAGTGTCTTGAGAATCAACCTAACGA 298 Query 335 TGATCAGGTTTCTCATGATTCTAAAGCAACAGTCTTGCTTGCCATGTCTGATCTTTTATA 394 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 299 TGATCAGGTTTCTCATGATTCTAAAGCAACAGTCTTGCTTGCCATGTCTGATCTTTTATA 358 Query 395 CGAAAGTGGGAATAGTAGTGAGGCCATTGAACGCCTTAAGCAAGTCATGACTCTGACACA 454 |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 359 CGAAAGTGGGAACAGTAGTGAAGCCATTGAACGCCTTAAGCAAGTCATGACTCTGACACT 418 Query 455 CTCATCGTTGGCTATTAGAGTTGTTGCTGTGGAAGCCCTTGTTGGTCTGCTGATTCAGTC 514 ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| Sbjct 419 CTCATCGTTGGCTATAAGAGTTGTTGCTGTGGAAGCTCTTGTTGGTCTGCTGATTCAGTC 478 Query 515 AGGACAGGATGATGCTTCATTGGATGTTGCTGACGAATTTCTGAAATTGGTAAAAGAGAG 574 |||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||| Sbjct 479 AGGACAGGATGATGCTTCATTGGATGTTGCTGGCGAATTCCTGGAATTGGTAAAAGAGAG 538 Query 575 TGGCCATGAGAATCTTCAGGGTGTGGTTGCTACAGTTAAAGCGATCAAAGGCCTTGCTGA 634 ||||||||||||||||||| |||||||||||||| |||||| ||||||||||| ||||| Sbjct 539 CGGCCATGAGAATCTTCAGGATGTGGTTGCTACAGCTAAAGCAATCAAAGGCCTAGCTGA 598 Query 635 GCTTGTGAAAGGAAATATCGAATCCGCCGAATCTTTATTTCGAGGACTTGAGAATCATGA 694 |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 599 GCTTGTGAAAGGAAATATTGAATCTGCCGAATCTTTATTTCGAGGACTTGAGAATCATGA 658 Query 695 AAGCTGCAAAGGTAACATTGCACTTTCTTATGGTGAATACTTGCACGCCACTGGAAATTT 754 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 659 AAGCTGCAAAGGTAACATTGCACTTTCTTATGGTGAATTCTTGCACGCCACTGGAAATTT 718 Query 755 TGAACTGGCAAAGGAGATGTATCAGAAGGCAATTCAAGGAGTGACAGAGACCAAAGAATC 814 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 719 TGAACTGGCAAAGGAGATGTATCATAAGGCAATTCAAGGAGTGACAGAGACCAAAGAATC 778 Query 815 TATGTGTTCATGTAACATGAACTTGAAGGCAGTCTCACTGGCTGCCACATTTGCTCTGGG 874 ||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||| Sbjct 779 TATGTGTTCATGTAACATGAATTTGAAGGCAGTCTCGCTGGCAGCCACATTTGCTCTGGG 838 Query 875 TCAGCTCGAGTCACACATTGGAAACTTTGGTGTTGCGGAGAAGACACTGACCGACGCATT 934 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 839 TCAGCTCGAGTCACACATTGGAAACTTTGGTGTTGCGGAGAAGACACTGACAGACGCATT 898 Query 935 GACAAA-GACTGAGGAACATTACGGAGACAATCATCCTAAGGTTGGTGTGATTTTAACCG 993 |||||| | ||||||||||||| ||| ||||||||||||||||||||||||| ||||||| Sbjct 899 GACAAACG-CTGAGGAACATTATGGAAACAATCATCCTAAGGTTGGTGTGATCTTAACCG 957 Query 994 CTGTGGCTCTGATGTATGGAAACAAAGCAAAGCAAGAACGCTCAAGTTCTATCTTGATTC 1053 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 958 CTGTGGCTCTGATGTATGGAAACAAAGCAAAGCAAGAACGCTCAAGTTCTATCCTGATTC 1017 Query 1054 AAGAGGGCCTCTACAGAAAAGCATTGGAGCTCATGAAAGCACCTCCACTGGATTCAAAAG 1113 | |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1018 AGGAGGGCCTCTTCAGAAAAGCATTGGAGCTCATGAAAGCACCTCCACTGGATTCAGAAG 1077 Query 1114 GGATAATAAACATGGAAAATCAAGAAGTAATAGCTTTAGCAAGAGCCGGGTATGCGGAGT 1173 |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| Sbjct 1078 GGATAATAAACATGGAAAATCAAGGAGTAATGGCTTTAGCAAGAGCCGGGTATGCGGAGT 1137 Query 1174 TACTACTGATTCAAGAGAACAGAAAAAGCGAAGGAGAGAAAATGAAATCATGGGCCGAAT 1233 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1138 TACTACTGATTCAAGAGAACAGAAAAAGCGAAGGAGAGAAAATGAAATCATGGGCCGAAT 1197 Query 1234 CAGCGTGGAGAAACAAACGCATTTCTCTATCAGAAGCATTGACTCTCTCAGAGCCGTTAG 1293 | |||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||| Sbjct 1198 CTGCGTGGAGAAACAAACGCATCTCTCTTTCAGAAGCATTGACTCTCTCAGAGCCATTAG 1257 Query 1294 GTAAAGTAGCAATCATAGATGCTCGCACCACTCGTGTACTCTAAAAGAATCT 1345 |||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 1258 GTAAAGTAGCAATCATAGATGCTCGCACCACTCGAGTCCTCTAAAAGAATCT 1309 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53326343000 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5