BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G02130.1
Length=1426
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486989 jgi|Araly1|486989|fgenesh2_kg.6__123__AT5G02130.1 2124 0.0
> Ahg486989 jgi|Araly1|486989|fgenesh2_kg.6__123__AT5G02130.1
Length=1351
Score = 2124 bits (1150), Expect = 0.0
Identities = 1259/1312 (96%), Gaps = 6/1312 (0%)
Strand=Plus/Plus
Query 37 TCTGAGCAAGACAAGAAAAAAGAAG-ATATTGAGCGATTATGATTCGCGCAGCTGCCAAA 95
||||| |||||||||||||||| || | |||||||||||||||||||||| ||| |||||
Sbjct 1 TCTGAACAAGACAAGAAAAAAG-AGTAAATTGAGCGATTATGATTCGCGCGGCTACCAAA 59
Query 96 -TTCTCCAGAGAAGCAGCGGCAACGATTCGTGGCCGCACGATCTCCGTTAGAGGAAACCT 154
|| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 GTT-TCAAGAGCAGCAGCGGCAACGATTCGTGGCCGCACGATCTCCGTTAGAGGAAACCT 118
Query 155 TATTCGATACTCGACGCCATTGAGATTGATTCACGGTGAAATCAGCGTTCCAAACGCGAA 214
|||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 119 TATTAGATACTCGACGCCACTGAGATTGATTCACGGTGAAATCAGTGTTCCAAACGCGAA 178
Query 215 TCATGTTGCTATTCAGATGGTTAATTACGCTCTTTCTCACGCTAGGTCACAAAAATCAGA 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 TCATGTTGCTATTCAGATGGTTAATTACGCTCTTTCTCACGCTAGGTCACAAAAATCAGA 238
Query 275 TGAATCTTATGCTCAAGGGATGCTAGTGCTTGAGCAGTGTCTTGGGAATCAACCTAACGA 334
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 239 TGAATCTTATGCTCAAGGGATGCTAGTGCTTGAACAGTGTCTTGAGAATCAACCTAACGA 298
Query 335 TGATCAGGTTTCTCATGATTCTAAAGCAACAGTCTTGCTTGCCATGTCTGATCTTTTATA 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TGATCAGGTTTCTCATGATTCTAAAGCAACAGTCTTGCTTGCCATGTCTGATCTTTTATA 358
Query 395 CGAAAGTGGGAATAGTAGTGAGGCCATTGAACGCCTTAAGCAAGTCATGACTCTGACACA 454
|||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 359 CGAAAGTGGGAACAGTAGTGAAGCCATTGAACGCCTTAAGCAAGTCATGACTCTGACACT 418
Query 455 CTCATCGTTGGCTATTAGAGTTGTTGCTGTGGAAGCCCTTGTTGGTCTGCTGATTCAGTC 514
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 419 CTCATCGTTGGCTATAAGAGTTGTTGCTGTGGAAGCTCTTGTTGGTCTGCTGATTCAGTC 478
Query 515 AGGACAGGATGATGCTTCATTGGATGTTGCTGACGAATTTCTGAAATTGGTAAAAGAGAG 574
|||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||
Sbjct 479 AGGACAGGATGATGCTTCATTGGATGTTGCTGGCGAATTCCTGGAATTGGTAAAAGAGAG 538
Query 575 TGGCCATGAGAATCTTCAGGGTGTGGTTGCTACAGTTAAAGCGATCAAAGGCCTTGCTGA 634
||||||||||||||||||| |||||||||||||| |||||| ||||||||||| |||||
Sbjct 539 CGGCCATGAGAATCTTCAGGATGTGGTTGCTACAGCTAAAGCAATCAAAGGCCTAGCTGA 598
Query 635 GCTTGTGAAAGGAAATATCGAATCCGCCGAATCTTTATTTCGAGGACTTGAGAATCATGA 694
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 599 GCTTGTGAAAGGAAATATTGAATCTGCCGAATCTTTATTTCGAGGACTTGAGAATCATGA 658
Query 695 AAGCTGCAAAGGTAACATTGCACTTTCTTATGGTGAATACTTGCACGCCACTGGAAATTT 754
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 659 AAGCTGCAAAGGTAACATTGCACTTTCTTATGGTGAATTCTTGCACGCCACTGGAAATTT 718
Query 755 TGAACTGGCAAAGGAGATGTATCAGAAGGCAATTCAAGGAGTGACAGAGACCAAAGAATC 814
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 719 TGAACTGGCAAAGGAGATGTATCATAAGGCAATTCAAGGAGTGACAGAGACCAAAGAATC 778
Query 815 TATGTGTTCATGTAACATGAACTTGAAGGCAGTCTCACTGGCTGCCACATTTGCTCTGGG 874
||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||
Sbjct 779 TATGTGTTCATGTAACATGAATTTGAAGGCAGTCTCGCTGGCAGCCACATTTGCTCTGGG 838
Query 875 TCAGCTCGAGTCACACATTGGAAACTTTGGTGTTGCGGAGAAGACACTGACCGACGCATT 934
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 839 TCAGCTCGAGTCACACATTGGAAACTTTGGTGTTGCGGAGAAGACACTGACAGACGCATT 898
Query 935 GACAAA-GACTGAGGAACATTACGGAGACAATCATCCTAAGGTTGGTGTGATTTTAACCG 993
|||||| | ||||||||||||| ||| ||||||||||||||||||||||||| |||||||
Sbjct 899 GACAAACG-CTGAGGAACATTATGGAAACAATCATCCTAAGGTTGGTGTGATCTTAACCG 957
Query 994 CTGTGGCTCTGATGTATGGAAACAAAGCAAAGCAAGAACGCTCAAGTTCTATCTTGATTC 1053
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 958 CTGTGGCTCTGATGTATGGAAACAAAGCAAAGCAAGAACGCTCAAGTTCTATCCTGATTC 1017
Query 1054 AAGAGGGCCTCTACAGAAAAGCATTGGAGCTCATGAAAGCACCTCCACTGGATTCAAAAG 1113
| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1018 AGGAGGGCCTCTTCAGAAAAGCATTGGAGCTCATGAAAGCACCTCCACTGGATTCAGAAG 1077
Query 1114 GGATAATAAACATGGAAAATCAAGAAGTAATAGCTTTAGCAAGAGCCGGGTATGCGGAGT 1173
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 1078 GGATAATAAACATGGAAAATCAAGGAGTAATGGCTTTAGCAAGAGCCGGGTATGCGGAGT 1137
Query 1174 TACTACTGATTCAAGAGAACAGAAAAAGCGAAGGAGAGAAAATGAAATCATGGGCCGAAT 1233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 TACTACTGATTCAAGAGAACAGAAAAAGCGAAGGAGAGAAAATGAAATCATGGGCCGAAT 1197
Query 1234 CAGCGTGGAGAAACAAACGCATTTCTCTATCAGAAGCATTGACTCTCTCAGAGCCGTTAG 1293
| |||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||
Sbjct 1198 CTGCGTGGAGAAACAAACGCATCTCTCTTTCAGAAGCATTGACTCTCTCAGAGCCATTAG 1257
Query 1294 GTAAAGTAGCAATCATAGATGCTCGCACCACTCGTGTACTCTAAAAGAATCT 1345
|||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1258 GTAAAGTAGCAATCATAGATGCTCGCACCACTCGAGTCCTCTAAAAGAATCT 1309
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53326343000
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5