BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G02140.1
Length=885
Score E
Sequences producing significant alignments: (Bits) Value
Ahg892126 jgi|Araly1|892126|Al_scaffold_0006_122 1092 0.0
Ahg926966 jgi|Araly1|926966|scaffold_202527.1 58.4 9e-08
> Ahg892126 jgi|Araly1|892126|Al_scaffold_0006_122
Length=747
Score = 1092 bits (591), Expect = 0.0
Identities = 654/685 (95%), Gaps = 2/685 (0%)
Strand=Plus/Plus
Query 47 CCTTCACTGATGGAGCTCAGCTTATAATAGTGAATAACTGCCAGGAGAGCATTTGGCCGG 106
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 62 CCTTCACTGATGGAGCTCAGCTTATATTAGTGAATAACTGCCAGGAGAGCATCTGGCCGG 121
Query 107 GAATTCTCGGCGGCGGAGGCCAAATCACACCAAGAAACGGCGGATTCCACATGGGAAGCG 166
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 122 GAATCCTCGGCGGCGGAGGCCAAATCACACCGAGAAACGGCGGATTCCACATGGGAAGCG 181
Query 167 GCGAAGAAACCATCATAGACGTACCGGATAAATGGTCCGGTCGAATCTGGGGTAGACAAG 226
||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 182 GCGAAGAAACCATAATAGACGTACCGGATAAATGGTCCGGTCGAATCTGGGGTCGACAAG 241
Query 227 GCTGCACCTTTAACCAAAACGGTAAAGGCTCATGCCAAACCGGAGACTGCAACGACGGCT 286
|||||| ||||||||||||||| ||||||||||||||||||||||| ||||||| ||| |
Sbjct 242 GCTGCATCTTTAACCAAAACGGAAAAGGCTCATGCCAAACCGGAGATTGCAACGGCGGTT 301
Query 287 CTA-TCAACTGCCAAGGAACCGGCGGTGTACCACCAGCAACCGTAGTAGAAATGACATTA 345
| | |||| ||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 302 C-ACTCAATTGCCAAGGAACCGGCGGTGTACCACCAGCAACCGTCGTGGAAATGACATTA 360
Query 346 GGCTCATCTTCCTCTCCGCTTCATTTCTACGACGTAAGTCTCGTCGACGGTTTCAATCTT 405
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 361 GGCTCATCTTCCTCGCCGCTTCATTTCTACGACGTAAGTCTCGTCGACGGATTCAATCTC 420
Query 406 CCGGTGTCGATGAAACCAATCGGCGGTGGAGTTGGATGTGGCGTTGCGGCTTGTGAAGTG 465
|| |||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||
Sbjct 421 CCTGTGTCGATGAAACCAATCGGTGGTGGAGTTGGATGTGGTGTTGCGGCTTTTGAAGTG 480
Query 466 AATTTGAACATTTGTTGTCCATCAGCTTTGGAAGTTAAGAGAGATGGGAAAGTGGTTGGT 525
|||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 481 AATTTGAATATTTGTTGTCCATCGGCTTTGGAAGTTAAGAGAGATGGTAAAGTGGTTGGT 540
Query 526 TGTAAAAGTGCTTGCTTGGCGATGCAATCGGCTAAGTATTGTTGCACCGGTGAATATGCG 585
|| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 541 TGCAAAAGTGCTTGCTTGGCGATGCAATCGGCTAAGTATTGTTGTACCGGAGAATATGCG 600
Query 586 AATCCTCAGGCGTGTAAGCCGACTCTGTTCGCGAATCTGTTTAAAGCGATTTGTCCTAAA 645
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AATCCTCAGGCGTGTAAGCCGACTCTGTTCGCGAATCTGTTTAAAGCGATTTGTCCTAAG 660
Query 646 GCTTATAGTTATGCGTTTGATGATTCTAGTAGTTTGAATAAGTGTAGAGCTTCTCGTTAT 705
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 661 GCTTATAGTTATGCGTTTGATGATTCTAGTAGTTTGAATAAGTGTAGGGCTTCTCGTTAT 720
Query 706 GTTATCACTTTCTGTCCTCCAAAGT 730
|||||||||||||||||||||||||
Sbjct 721 GTTATCACTTTCTGTCCTCCAAAGT 745
> Ahg926966 jgi|Araly1|926966|scaffold_202527.1
Length=1034
Score = 58.4 bits (31), Expect = 9e-08
Identities = 33/34 (97%), Gaps = 0/34 (0%)
Strand=Plus/Plus
Query 368 ATTTCTACGACGTAAGTCTCGTCGACGGTTTCAA 401
|||||||||||||||||||||||||||||| |||
Sbjct 392 ATTTCTACGACGTAAGTCTCGTCGACGGTTACAA 425
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32785708620
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5