BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G02150.1 Length=1176 Score E Sequences producing significant alignments: (Bits) Value Ahg486992 jgi|Araly1|486992|fgenesh2_kg.6__126__AT5G02150.1 1482 0.0 Ahg478250 jgi|Araly1|478250|fgenesh2_kg.3__951__AT3G09350.1 676 0.0 > Ahg486992 jgi|Araly1|486992|fgenesh2_kg.6__126__AT5G02150.1 Length=1015 Score = 1482 bits (802), Expect = 0.0 Identities = 934/995 (94%), Gaps = 20/995 (2%) Strand=Plus/Plus Query 1 CCGTTGCTTCAATGGCGAAAGACGGACCTAACTGGGACGGTCTGCTTAAGTGGAGTCTCT 60 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| Sbjct 1 CCGTTGCTTCAATGGCGAAAGACGGACCTAACTGGGACGGTCTGCTTAAATGGAGCCTCT 60 Query 61 CTCACTCCGATGGTACTCGACCTACTTGCCAATTAAGTGAGGAGGATCGAAAATGGTTTG 120 |||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||| Sbjct 61 CTCACTCCGATGGTACTCGACCTACTCGCCATTTAAGTGAGGAAGATCGAAAATGGTTTG 120 Query 121 CAGAAGCTATGCAATCACAAACGGTAGATGTAGTCAAGCGGTTGAAGGAGATTACACAGG 180 |||| |||||||| || ||||| |||||| |||||||||||||||||||||| ||||| | Sbjct 121 CAGAGGCTATGCAGTCGCAAACAGTAGATATAGTCAAGCGGTTGAAGGAGATAACACAAG 180 Query 181 TATTGCAGACACCTCAACAAGTTTTGGAGGCTCATGAAGTGACCCCTCAAGATATTGAAG 240 |||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||| Sbjct 181 TATTGCAGACACCTCAACAAGTTTTGGAGGCTCACCAAGTAACCCCTAAAGATATTGAAG 240 Query 241 GTTTGTTGGATGAGTTGCAGGAACATGTTGAATCGATTGATATGGCTAATGATCTTCATT 300 ||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||| Sbjct 241 GTTTGCTGGATGAGTTGCAGGAACATGTTGAATCAATTGACATGGCTAATGATCTTCATT 300 Query 301 CCGTTGGAGGCTTGGTACCTCTTCTTGGCTACCTCAAAAACTCCAATGCTAATATCCGGG 360 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 301 CCGTTGGAGGCTTGGTACCTCTTCTTGGCTACCTCAAAAACTCCAATGCTAATATTCGGG 360 Query 361 CTAAGTCTGCAGATGTTGTAAGCACAATAGTTGAGAACAATCCTCGGAGTCAAGAATCAG 420 |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| Sbjct 361 CTAAGTCTGCAGATGTCATAAGCACAATAGTTGAGAACAACCCTCGGAGTCAAGAATCAG 420 Query 421 TTATGGAAGCCAATGGTTTAGAGTCCTTGCTTT-TAAGGTTTACTTCAGACACCGATATG 479 ||||||||||||||||||||||||| ||||||| || |||||||||||||||||| || Sbjct 421 TTATGGAAGCCAATGGTTTAGAGTCATTGCTTTCGAA-CTTTACTTCAGACACCGATTTG 479 Query 480 CATTCTCGAACACAGGCTCTCGGTGCAATATCATCTTTGATTCGCAATAATAAACCTGGG 539 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct 480 CATTCTCGAACACAGGCGCTCGGTGCAATATCATCTTTGATTCGCAATAATAAACCCGGG 539 Query 540 ATCACAGGTTTCCGGATTGCAAATGGTTACTCTGGTTTAAAAGATGCTTTGGAAACTGAT 599 ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 540 ATCACAGGTTTCCAGATTGCAAATGGTTACTCTGGTTTAAAAGATGCTTTGGAAGCTGAT 599 Query 600 AGTGTGAGATTTCAAAGGAAAGCTTTAAACTTGTTGCATTATCTTCTACAAGAGAATGAC 659 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 600 AGTGTGAGATTTCAAAGGAAAGCTTTAAACTTGCTGCATTATCTTCTACAAGAGAATGAC 659 Query 660 TCAGACTCCGATATTGCTATAGAATTCGGGCTTCACCATTTGATGATGCACCTCGTGTCT 719 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 660 TCAGACTCCGATATTGCTATAGAACTCGGGCTTCACCATTTGATGATGCACCTCGTGTCT 719 Query 720 AGCTTCGATGCTGATGTAAGAGAAGCTGCTCTTCGAGGATTGCTTGAGCTCGTGAAAGCT 779 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 720 AGCTTCGATGCTGATGTAAGAGAAGCTGCTCTTCGAGGATTGCTTGAGCTCGTGAAAGCT 779 Query 780 AGAAAAGACTGTAGTACTTGTGGTTCTAGCATAGTGAAAGGCGATGAGAGACTCAGACAG 839 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 780 AGAAAAGACTGTAGTACTTGTGGTTCTAGCATAGTGAAAGGCGATGAGAGACTGAGACAG 839 Query 840 ATTCTAAAAGATCGGATCAAAGCAATCAGCCGGGTCAAAGCAATGAGCTTGTTTATGTCA 899 || ||||||||||||||||||||||||||| | || || | |||||| Sbjct 840 ATGCTAAAAGATCGGATCAAAGCAATCAGC----T--------TG---TT-T--ATGTCA 881 Query 900 CAAGAAGATCTATCAGCCGCTAAAGAGGAGAGGCAGCTCTTAGATTCACTATGGACCACA 959 ||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||| Sbjct 882 CAAGAAGATCTCTCAGCTGCTAAAGAGGAGAGACAGCTCTTAGATTCACTATGGACCACA 941 Query 960 ATCTTCAACGAACCTTCTTCTCTTTAGAGACAAAG 994 ||| ||||||||||||||||||||||||| |||| Sbjct 942 TTCTACAACGAACCTTCTTCTCTTTAGAGAGAAAG 976 > Ahg478250 jgi|Araly1|478250|fgenesh2_kg.3__951__AT3G09350.1 Length=1299 Score = 676 bits (366), Expect = 0.0 Identities = 718/883 (81%), Gaps = 43/883 (5%) Strand=Plus/Plus Query 7 CTTCAATGGCGAAAGACGGACCTAACTGGGAC-GGTCTGCTTAAGTGGAGTCTCTCTCAC 65 ||||||||||||||||||||||||| |||||| ||| | ||||| ||||||||||||||| Sbjct 149 CTTCAATGGCGAAAGACGGACCTAATTGGGACGGGT-TACTTAAATGGAGTCTCTCTCAC 207 Query 66 TCCGATGGTACTCGACCTACTTGCCAATTAAGTGAGGAGGATCGAAAATGGTTTGCAGAA 125 | || || |||||||| ||| |||| || |||||||||||||||||||||||| || Sbjct 208 GCTGACGGGACTCGACCCACTCGCCAGTTGAGTGAGGAGGATCGAAAATGGTTTATGGAG 267 Query 126 GCTATGCAATCACAAACGGTAGATGTAGTCAAGCGGTTGAAGGAGATTACA-CAGGTATT 184 ||||||||||| || || ||||||||||||||||| |||||||||||||| || || | Sbjct 268 GCTATGCAATCGCAGACTGTAGATGTAGTCAAGCGCATGAAGGAGATTACATTAGTTA-T 326 Query 185 GCAGACACCTCAACAAGTTTTGGAGGCTCATGAAGTGACCCCTCAAGATATTGAAGGTTT 244 ||| |||||| |||||||||||| || ||||| ||| || ||| |||||||| ||| ||| Sbjct 327 GCAAACACCTGAACAAGTTTTGGTGGATCATGGAGTTACACCTGAAGATATTCAAGATTT 386 Query 245 GTTGGATGAGTTGCAGGAACATGTTGAATCGATTGATATGGCTAATGATCTTCATTCCGT 304 |||||||| ||||||| || |||||||| || ||||||||||||||||||||||| | Sbjct 387 ACTGGATGAGCTGCAGGAGCACGTTGAATCAATCGATATGGCTAATGATCTTCATTCAAT 446 Query 305 TGGAGGCTTGGTACCTCTTCTTGGCTACCTCAAAAACTC-CAATGCTAATATCCGGGC-T 362 |||||||||||| ||||||||||| | ||| |||||||| | |||||||||| ||||| Sbjct 447 TGGAGGCTTGGTTCCTCTTCTTGGTTTCCTTAAAAACTCTC-ATGCTAATATTCGGGCAA 505 Query 363 AAGTCTGCAGATGTTGTAAGCACAATAGTTGAGAACAATCCTC-GGAGTCAAGAATC-AG 420 ||| |||| ||||| || |||||||||||| |||||||||| | | ||||| ||| | || Sbjct 506 AAG-CTGCGGATGTCGTTAGCACAATAGTTCAGAACAATCC-CAGAAGTCAGGAA-CTAG 562 Query 421 TTATGGAAGCCAATGGTTTAGAGTCCTTGCTTTTAAGGTTT-ACTTCAGACACCGATATG 479 |||||||| | |||||||| ||||| || || | || ||| ||||||||||| ||||| Sbjct 563 TTATGGAAACAAATGGTTTGGAGTCATTACTCTCAA-ATTTCACTTCAGACACAGATATT 621 Query 480 CATTCTCGAACACAGGCTCTCGGTGCAATATCATCTTTGATTCGCAATAATAAACCTGGG 539 || ||||||| ||||| || || ||||||||||||||||||||| |||| ||||| || Sbjct 622 CACGCTCGAACCCAGGCCCTTGGCGCAATATCATCTTTGATTCGCCATAACAAACC-AGG 680 Query 540 A-TCACAGGTTTCCGGATTGCAAATGGTTACT-CTGGTTTAAAAGATGCTTTGGAAACTG 597 | | || | |||| | |||| |||||||| | |||| ||| ||||||||| | | ||| Sbjct 681 AGTAACTGCTTTCAAGCTTGCCAATGGTTA-TGCTGGCCTAAGAGATGCTTTAGCATCTG 739 Query 598 ATAGTGTGAGATTTCAAAGGAAAGCTTTAAACTTGTTGCATTATCTTCTACAAGAGAATG 657 ||||||||||||||||||||||||| |||||||||||||| ||||| || |||||| ||| Sbjct 740 ATAGTGTGAGATTTCAAAGGAAAGCCTTAAACTTGTTGCAATATCTACTGCAAGAGGATG 799 Query 658 ACTCAGACTC-C-GATATTGCTA-TAGAATTCGGGCTTCACC--ATTTGATGATGCACCT 712 | |||||| | | | |||||| | | || | ||| ||| || | | ||||||||| || Sbjct 800 ATTCAGAC-CGCAG-TATTGCGACTGGACT-CGGA-TTCCCCCGAGT-GATGATGCATCT 854 Query 713 CGTGTCTAGCTT-CGATGCTGATG-TAAGAGAAGCTGCTCTTCGAGGATTGCTTGAGCTC 770 || ||||| | ||||||||| | | |||||||| |||||||| |||||||||||||| Sbjct 855 CGCCTCTAG-TGACGATGCTGA-GATCAGAGAAGCCGCTCTTCGTGGATTGCTTGAGCT- 911 Query 771 GTGAAAGCTAGAAAAGACTG-TAGTA-CTTGTGGTT-CTAGCATAG-TGAAAGGCGATGA 826 || ||| |||||| || | | | | | | || | ||||||| | |||| |||||| Sbjct 912 -TGCAAGAGAGAAAA-AC-GATGGAAGCG-GAAGTAGC-AGCATAGATAAAAG-CGATGA 965 Query 827 GAGACTCAGACAGATTCTAAAAGATCGGATCAAAGCAATCAGC 869 || ||| || ||| | ||| |||| |||||||||| ||||||| Sbjct 966 GAAACTGAGGCAGCTACTAGAAGAACGGATCAAAGGAATCAGC 1008 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43879477467 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5