BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G02150.1
Length=1176
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486992 jgi|Araly1|486992|fgenesh2_kg.6__126__AT5G02150.1 1482 0.0
Ahg478250 jgi|Araly1|478250|fgenesh2_kg.3__951__AT3G09350.1 676 0.0
> Ahg486992 jgi|Araly1|486992|fgenesh2_kg.6__126__AT5G02150.1
Length=1015
Score = 1482 bits (802), Expect = 0.0
Identities = 934/995 (94%), Gaps = 20/995 (2%)
Strand=Plus/Plus
Query 1 CCGTTGCTTCAATGGCGAAAGACGGACCTAACTGGGACGGTCTGCTTAAGTGGAGTCTCT 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1 CCGTTGCTTCAATGGCGAAAGACGGACCTAACTGGGACGGTCTGCTTAAATGGAGCCTCT 60
Query 61 CTCACTCCGATGGTACTCGACCTACTTGCCAATTAAGTGAGGAGGATCGAAAATGGTTTG 120
|||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||
Sbjct 61 CTCACTCCGATGGTACTCGACCTACTCGCCATTTAAGTGAGGAAGATCGAAAATGGTTTG 120
Query 121 CAGAAGCTATGCAATCACAAACGGTAGATGTAGTCAAGCGGTTGAAGGAGATTACACAGG 180
|||| |||||||| || ||||| |||||| |||||||||||||||||||||| ||||| |
Sbjct 121 CAGAGGCTATGCAGTCGCAAACAGTAGATATAGTCAAGCGGTTGAAGGAGATAACACAAG 180
Query 181 TATTGCAGACACCTCAACAAGTTTTGGAGGCTCATGAAGTGACCCCTCAAGATATTGAAG 240
|||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||
Sbjct 181 TATTGCAGACACCTCAACAAGTTTTGGAGGCTCACCAAGTAACCCCTAAAGATATTGAAG 240
Query 241 GTTTGTTGGATGAGTTGCAGGAACATGTTGAATCGATTGATATGGCTAATGATCTTCATT 300
||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 241 GTTTGCTGGATGAGTTGCAGGAACATGTTGAATCAATTGACATGGCTAATGATCTTCATT 300
Query 301 CCGTTGGAGGCTTGGTACCTCTTCTTGGCTACCTCAAAAACTCCAATGCTAATATCCGGG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 301 CCGTTGGAGGCTTGGTACCTCTTCTTGGCTACCTCAAAAACTCCAATGCTAATATTCGGG 360
Query 361 CTAAGTCTGCAGATGTTGTAAGCACAATAGTTGAGAACAATCCTCGGAGTCAAGAATCAG 420
|||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 361 CTAAGTCTGCAGATGTCATAAGCACAATAGTTGAGAACAACCCTCGGAGTCAAGAATCAG 420
Query 421 TTATGGAAGCCAATGGTTTAGAGTCCTTGCTTT-TAAGGTTTACTTCAGACACCGATATG 479
||||||||||||||||||||||||| ||||||| || |||||||||||||||||| ||
Sbjct 421 TTATGGAAGCCAATGGTTTAGAGTCATTGCTTTCGAA-CTTTACTTCAGACACCGATTTG 479
Query 480 CATTCTCGAACACAGGCTCTCGGTGCAATATCATCTTTGATTCGCAATAATAAACCTGGG 539
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 480 CATTCTCGAACACAGGCGCTCGGTGCAATATCATCTTTGATTCGCAATAATAAACCCGGG 539
Query 540 ATCACAGGTTTCCGGATTGCAAATGGTTACTCTGGTTTAAAAGATGCTTTGGAAACTGAT 599
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 540 ATCACAGGTTTCCAGATTGCAAATGGTTACTCTGGTTTAAAAGATGCTTTGGAAGCTGAT 599
Query 600 AGTGTGAGATTTCAAAGGAAAGCTTTAAACTTGTTGCATTATCTTCTACAAGAGAATGAC 659
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 600 AGTGTGAGATTTCAAAGGAAAGCTTTAAACTTGCTGCATTATCTTCTACAAGAGAATGAC 659
Query 660 TCAGACTCCGATATTGCTATAGAATTCGGGCTTCACCATTTGATGATGCACCTCGTGTCT 719
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 660 TCAGACTCCGATATTGCTATAGAACTCGGGCTTCACCATTTGATGATGCACCTCGTGTCT 719
Query 720 AGCTTCGATGCTGATGTAAGAGAAGCTGCTCTTCGAGGATTGCTTGAGCTCGTGAAAGCT 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AGCTTCGATGCTGATGTAAGAGAAGCTGCTCTTCGAGGATTGCTTGAGCTCGTGAAAGCT 779
Query 780 AGAAAAGACTGTAGTACTTGTGGTTCTAGCATAGTGAAAGGCGATGAGAGACTCAGACAG 839
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 780 AGAAAAGACTGTAGTACTTGTGGTTCTAGCATAGTGAAAGGCGATGAGAGACTGAGACAG 839
Query 840 ATTCTAAAAGATCGGATCAAAGCAATCAGCCGGGTCAAAGCAATGAGCTTGTTTATGTCA 899
|| ||||||||||||||||||||||||||| | || || | ||||||
Sbjct 840 ATGCTAAAAGATCGGATCAAAGCAATCAGC----T--------TG---TT-T--ATGTCA 881
Query 900 CAAGAAGATCTATCAGCCGCTAAAGAGGAGAGGCAGCTCTTAGATTCACTATGGACCACA 959
||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 882 CAAGAAGATCTCTCAGCTGCTAAAGAGGAGAGACAGCTCTTAGATTCACTATGGACCACA 941
Query 960 ATCTTCAACGAACCTTCTTCTCTTTAGAGACAAAG 994
||| ||||||||||||||||||||||||| ||||
Sbjct 942 TTCTACAACGAACCTTCTTCTCTTTAGAGAGAAAG 976
> Ahg478250 jgi|Araly1|478250|fgenesh2_kg.3__951__AT3G09350.1
Length=1299
Score = 676 bits (366), Expect = 0.0
Identities = 718/883 (81%), Gaps = 43/883 (5%)
Strand=Plus/Plus
Query 7 CTTCAATGGCGAAAGACGGACCTAACTGGGAC-GGTCTGCTTAAGTGGAGTCTCTCTCAC 65
||||||||||||||||||||||||| |||||| ||| | ||||| |||||||||||||||
Sbjct 149 CTTCAATGGCGAAAGACGGACCTAATTGGGACGGGT-TACTTAAATGGAGTCTCTCTCAC 207
Query 66 TCCGATGGTACTCGACCTACTTGCCAATTAAGTGAGGAGGATCGAAAATGGTTTGCAGAA 125
| || || |||||||| ||| |||| || |||||||||||||||||||||||| ||
Sbjct 208 GCTGACGGGACTCGACCCACTCGCCAGTTGAGTGAGGAGGATCGAAAATGGTTTATGGAG 267
Query 126 GCTATGCAATCACAAACGGTAGATGTAGTCAAGCGGTTGAAGGAGATTACA-CAGGTATT 184
||||||||||| || || ||||||||||||||||| |||||||||||||| || || |
Sbjct 268 GCTATGCAATCGCAGACTGTAGATGTAGTCAAGCGCATGAAGGAGATTACATTAGTTA-T 326
Query 185 GCAGACACCTCAACAAGTTTTGGAGGCTCATGAAGTGACCCCTCAAGATATTGAAGGTTT 244
||| |||||| |||||||||||| || ||||| ||| || ||| |||||||| ||| |||
Sbjct 327 GCAAACACCTGAACAAGTTTTGGTGGATCATGGAGTTACACCTGAAGATATTCAAGATTT 386
Query 245 GTTGGATGAGTTGCAGGAACATGTTGAATCGATTGATATGGCTAATGATCTTCATTCCGT 304
|||||||| ||||||| || |||||||| || ||||||||||||||||||||||| |
Sbjct 387 ACTGGATGAGCTGCAGGAGCACGTTGAATCAATCGATATGGCTAATGATCTTCATTCAAT 446
Query 305 TGGAGGCTTGGTACCTCTTCTTGGCTACCTCAAAAACTC-CAATGCTAATATCCGGGC-T 362
|||||||||||| ||||||||||| | ||| |||||||| | |||||||||| |||||
Sbjct 447 TGGAGGCTTGGTTCCTCTTCTTGGTTTCCTTAAAAACTCTC-ATGCTAATATTCGGGCAA 505
Query 363 AAGTCTGCAGATGTTGTAAGCACAATAGTTGAGAACAATCCTC-GGAGTCAAGAATC-AG 420
||| |||| ||||| || |||||||||||| |||||||||| | | ||||| ||| | ||
Sbjct 506 AAG-CTGCGGATGTCGTTAGCACAATAGTTCAGAACAATCC-CAGAAGTCAGGAA-CTAG 562
Query 421 TTATGGAAGCCAATGGTTTAGAGTCCTTGCTTTTAAGGTTT-ACTTCAGACACCGATATG 479
|||||||| | |||||||| ||||| || || | || ||| ||||||||||| |||||
Sbjct 563 TTATGGAAACAAATGGTTTGGAGTCATTACTCTCAA-ATTTCACTTCAGACACAGATATT 621
Query 480 CATTCTCGAACACAGGCTCTCGGTGCAATATCATCTTTGATTCGCAATAATAAACCTGGG 539
|| ||||||| ||||| || || ||||||||||||||||||||| |||| ||||| ||
Sbjct 622 CACGCTCGAACCCAGGCCCTTGGCGCAATATCATCTTTGATTCGCCATAACAAACC-AGG 680
Query 540 A-TCACAGGTTTCCGGATTGCAAATGGTTACT-CTGGTTTAAAAGATGCTTTGGAAACTG 597
| | || | |||| | |||| |||||||| | |||| ||| ||||||||| | | |||
Sbjct 681 AGTAACTGCTTTCAAGCTTGCCAATGGTTA-TGCTGGCCTAAGAGATGCTTTAGCATCTG 739
Query 598 ATAGTGTGAGATTTCAAAGGAAAGCTTTAAACTTGTTGCATTATCTTCTACAAGAGAATG 657
||||||||||||||||||||||||| |||||||||||||| ||||| || |||||| |||
Sbjct 740 ATAGTGTGAGATTTCAAAGGAAAGCCTTAAACTTGTTGCAATATCTACTGCAAGAGGATG 799
Query 658 ACTCAGACTC-C-GATATTGCTA-TAGAATTCGGGCTTCACC--ATTTGATGATGCACCT 712
| |||||| | | | |||||| | | || | ||| ||| || | | ||||||||| ||
Sbjct 800 ATTCAGAC-CGCAG-TATTGCGACTGGACT-CGGA-TTCCCCCGAGT-GATGATGCATCT 854
Query 713 CGTGTCTAGCTT-CGATGCTGATG-TAAGAGAAGCTGCTCTTCGAGGATTGCTTGAGCTC 770
|| ||||| | ||||||||| | | |||||||| |||||||| ||||||||||||||
Sbjct 855 CGCCTCTAG-TGACGATGCTGA-GATCAGAGAAGCCGCTCTTCGTGGATTGCTTGAGCT- 911
Query 771 GTGAAAGCTAGAAAAGACTG-TAGTA-CTTGTGGTT-CTAGCATAG-TGAAAGGCGATGA 826
|| ||| |||||| || | | | | | | || | ||||||| | |||| ||||||
Sbjct 912 -TGCAAGAGAGAAAA-AC-GATGGAAGCG-GAAGTAGC-AGCATAGATAAAAG-CGATGA 965
Query 827 GAGACTCAGACAGATTCTAAAAGATCGGATCAAAGCAATCAGC 869
|| ||| || ||| | ||| |||| |||||||||| |||||||
Sbjct 966 GAAACTGAGGCAGCTACTAGAAGAACGGATCAAAGGAATCAGC 1008
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43879477467
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5