BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G02160.1

Length=829
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg939592 jgi|Araly1|939592|scaffold_600136.1                        680    0.0  


> Ahg939592 jgi|Araly1|939592|scaffold_600136.1
Length=434

 Score =  680 bits (368),  Expect = 0.0
 Identities = 413/434 (95%), Gaps = 5/434 (1%)
 Strand=Plus/Plus

Query  148  TCACTT-AAAACCCTAAATTATGACGATCGCACCGGCATTGCAGACGACGTTCGTGTCAT  206
            |||||| |||||||||||| ||| |||||||||||||| |||||||||||||||||||||
Sbjct  1    TCACTTAAAAACCCTAAATCATGGCGATCGCACCGGCAATGCAGACGACGTTCGTGTCAT  60

Query  207  CAACCAACTTCCTGAAACATTCTTCTTCGTGGGGATCA-C--CATCACCGAACAATGTGA  263
            | |||| ||||||||||||||||||||||||||||||| |  | ||||||||||||||||
Sbjct  61   CGACCAGCTTCCTGAAACATTCTTCTTCGTGGGGATCATCATCCTCACCGAACAATGTGA  120

Query  264  TTCTTCCCAAAAACAAGAGATCTTCTTCCTCCGTAGTTGTCGCCGCCGTCGGTGATGTCT  323
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  121  TTCTTCCCAAAAACAAGAGATCGTCTTCCTCCGTAGTTGTCGCCGCCGTCGGTGATGTCT  180

Query  324  CTTCTGACGGAACAATCTACTTAATCGGCGGAGCCATCGCCGTTGCACTCGTCGGAACTG  383
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  CTTCTGACGGAACAATCTACTTAATCGGCGGAGCCATCGCCGTTGCACTCGTCGGAACTG  240

Query  384  CATTCCCGATCCTCTTCAAACGCAAAGACACGTGTCCGGAATGTGACGGAGCAGGATTTG  443
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  CATTTCCGATCCTCTTCAAACGCAAAGACACGTGTCCGGAATGTGACGGAGCAGGATTTG  300

Query  444  TGAGGAAAGGAGGAGTGACTCTGAGAGCCAACGCCGCACGGAAGGATCTTCCTCAGATCG  503
            |||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||
Sbjct  301  TGAGGAAAGGAGGAGTGACTCTGAGAGCGAATGCCGCACGCAAGGATCTTCCTCAGATCG  360

Query  504  TTTGTGCTAACTGCAATGGACTCGGAAAGCTTAACCAGATTGATAAATCATAAGTCT-TC  562
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||    ||
Sbjct  361  TTTGTGCTAACTGCAATGGACTGGGAAAGCTTAACCAGATTGATAAATCATAAGAGAGTC  420

Query  563  TTCATATATATGTA  576
            ||||||| ||||||
Sbjct  421  TTCATATTTATGTA  434



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30650825268


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5