BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G02170.1
Length=1830
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486994 jgi|Araly1|486994|fgenesh2_kg.6__128__AT5G02170.1 2532 0.0
Ahg486995 jgi|Araly1|486995|fgenesh2_kg.6__129__AT5G02180.1 416 3e-115
> Ahg486994 jgi|Araly1|486994|fgenesh2_kg.6__128__AT5G02170.1
Length=1788
Score = 2532 bits (1371), Expect = 0.0
Identities = 1676/1818 (92%), Gaps = 41/1818 (2%)
Strand=Plus/Plus
Query 24 TAGATGAAGCAAAACGAGACATTCGATCAAGAAAGGGAAGATTTGTATCACACGTTC-GA 82
|||||||||||| |||||||| ||||| |||||||||||||||||||| |||| | ||
Sbjct 1 TAGATGAAGCAACACGAGACAGTCGATGAAGAAAGGGAAGATTTGTAT--CACG--CAGA 56
Query 83 TGAGGAAGATGAAGAAAGCCAAACAGAGAGCTCCGTTCCCTCAACTCCTTTATCTCGTAA 142
||||||||| |||||||| ||||| |||||||||||||| ||||||||||||||||||||
Sbjct 57 TGAGGAAGACGAAGAAAGTCAAACCGAGAGCTCCGTTCCGTCAACTCCTTTATCTCGTAA 116
Query 143 CAGATCCGA-AGACGTTCCCGTTCCGTGGCCTCGAAGTTATCGACAATCTATGGATTTGT 201
||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 117 TGGATCCGATA-ACGTTCCCGTTCCGTGGCCTCGAAGTTATCGACAGTCTATGGATTTGT 175
Query 202 TGACTGGAGTTACACCTCCGACT-AGTACAAGTTTTGTCTCTTCATTTCGCCAGAGACGA 260
|||| |||||||||||||| | | |||||||||||||||||||| |||||||||||||||
Sbjct 176 TGACCGGAGTTACACCTCC-AATCAGTACAAGTTTTGTCTCTTCGTTTCGCCAGAGACGA 234
Query 261 CAAAGCTCTGTTTTCGGTTCGTTTACTTCTTCACCAAGCAAACAGCAACTTCTCATAGAC 320
|||| |||| |||||||||| ||||||||||| ||||||||||||||||||||||| |||
Sbjct 235 CAAATCTCTATTTTCGGTTCATTTACTTCTTCCCCAAGCAAACAGCAACTTCTCATCGAC 294
Query 321 AAAGACGAGATCCA-AAGCTCTGTTGTGTCCTCCATCAAATCATTTCTTGCTTCTCATCT 379
||||| |||||||| || ||||||| |||| |||||||| ||||||||||||||||||||
Sbjct 295 AAAGATGAGATCCATAA-CTCTGTTATGTCATCCATCAATTCATTTCTTGCTTCTCATCT 353
Query 380 CCAGCTATCAGTCCCAGGGGATCTTTTAACTCCCCAAGAAAACCGCAGTTGCACATTCTC 439
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 CCAGCTATCAGTCCCGGGGGATCTTTTAACTCCCCAAGAAAACCGCAGTTGCACATTCTC 413
Query 440 TCAATCCGTTCTCAACGGAATTAACGTTCTATGTGGAGTAGCTTTACTTACAATGCCTTA 499
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 414 TCAATCCGTTCTCAACGGAATCAATGTTCTATGTGGAGTAGCTTTACTTACAATGCCTTA 473
Query 500 CGCAGTT-AAAGAAGGAGGATGGTTAGGGCTTTTCATACTCTTCTCCTTTGGCATTATCA 558
|||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 474 CGCA-TTGAAAGAAGGAGGATGGTTAGGGCTTTTCATACTCTTCTCGTTTGGCATTATCA 532
Query 559 CTTTCTACACCGGCATTCTCCTCAAGAGATGTCTCGAGAACTCCCCTGGAATCCACACTT 618
|||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 533 CTTTCTACACAGGCATTCTCCTCAAGAGATGTCTCGAGAATTCACCTGGAATCCACACTT 592
Query 619 ACCCGGACATCGGTCAAGCTGCATTCGGAACCACTGGACGCATCCTCGTCTCTATACTTC 678
| |||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
Sbjct 593 ATCCGGACATCGGTCAAGCTGCATTCGGTACTACTGGACGCATCCTCGTCTCTATACTGC 652
Query 679 TCTACGTAGAGTTATACGCATCTTGTGTGGAATACATAATCATGATGAGTGATAATTTGT 738
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 653 TCTACGTGGAGTTATACGCATCTTGTGTGGAATACATAATTATGATGAGTGATAATTTGT 712
Query 739 CAAGAATGTTCCCAAATACCTCCTTATACATCAACGGATTTTCTTTAGATTCTACTCAAG 798
|||| ||||||||||||||||| |||||||||||||||| |||||||||||||| |||||
Sbjct 713 CAAGGATGTTCCCAAATACCTCTTTATACATCAACGGATGTTCTTTAGATTCTAATCAAG 772
Query 799 TTTTCGCCATTACCACGACTCTTATTGTTCTTCCTACTGTCTGGCTCAAAGACCTCAGCT 858
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 773 TTTTCGCCATTACCACGACTTTTATTGTTCTTCCTACTGTCTGGCTCAAAGACCTCAGCT 832
Query 859 TATTGTCCTATCTCTCAGCCGGAGGTGTCATCTCCTCAATCTTGCTTGCGCTTTGCCTCT 918
| ||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||
Sbjct 833 TGTTGTCCTATCTCTCAGCCGGAGGTGTCTTCTCCTCAATTTTGCTTGCGCTTTCCCTCT 892
Query 919 TTTGGGCTGGATCAGTAGACGGGGTTGGATTTCACATAAGCGGACAAGCTCTTGATATAA 978
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 893 TTTGGGCTGGATCAGTCGACGGGGTTGGATTTCACATAAGCGGACAAGCTCTCGATATAA 952
Query 979 CTAACATACCTGTCGCAATCGGAATTTACGGGTTCGGTTTCGGGAGTCACTCTGTTTTCC 1038
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 953 CTAACATACCTGTCGCCATTGGAATTTACGGGTTCGGTTTCGGGAGTCACTCTGTTTTCC 1012
Query 1039 CCAACATTTACTCATCCATGAAAGAACCTTCCAAGTTTCCTACGGTGCTTCTCATCAGTT 1098
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1013 CCAACATTTACTCATCCATGAAAGAACCTTCCAAGTTTCCTATGGTGCTTCTCATCAGTT 1072
Query 1099 TTGCGTTTTGCACTCTATTTTACATTGCGGTAGCGGTTTGTGGATTCACGATGTTTGGTG 1158
||||||||||||||||||| ||||| || |||||||||||||||| ||||||||||||||
Sbjct 1073 TTGCGTTTTGCACTCTATTCTACATCGCCGTAGCGGTTTGTGGATACACGATGTTTGGTG 1132
Query 1159 ATGCGATTCAATCCCAATTTACACTGAACATGCCACCACATTTCACCTCATCTAAAATCG 1218
| |||||||||||||||||||||||||||||||| | ||||||||| || ||||||||||
Sbjct 1133 AAGCGATTCAATCCCAATTTACACTGAACATGCCTCAACATTTCACATCGTCTAAAATCG 1192
Query 1219 CAGTCTGGACAGCGGTCGTAACACCAATGACGAAATACGCTTTAACGATCACTCCAGTAA 1278
||||||||||||||||||| ||||||||||||||||| ||| | ||||| |||||||| |
Sbjct 1193 CAGTCTGGACAGCGGTCGTTACACCAATGACGAAATATGCTCTGACGATTACTCCAGTGA 1252
Query 1279 TGCTAAGCCTAGAAGAACTCATACCGTCTTCATCAAGAAAGATGAGATCCAAAGGTGTCT 1338
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1253 TGCTAAGCCTAGAAGAACTCATACCGTCTTCGTCAAGAAAGATGAGATCCAAAGGTGTCT 1312
Query 1339 CTATGCTCTTTAGAACCATATTAGTTCTCTCCACTTTGGTCGTTGCACTCACAGTTCCAT 1398
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1313 CTATGCTTTTTAGAACCATCTTAGTTCTCTCCACTTTGGTCGTTGCACTCACAGTTCCAT 1372
Query 1399 TCTTCGCTACTGTGGCGGCTCTGATTGGATCTTTCATCGCAATGCTTATCGCGTTAATAT 1458
|||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1373 TCTTCGCTACCGTTGCGGCTCTGATTGGATCTTTTATCGCAATGCTTATCGCGTTAATAT 1432
Query 1459 TCCCGTGTCTCTGTTATATCAGCATTATGAAGGGTAGATTAACTAACTTTCAGATTGGAA 1518
|||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||
Sbjct 1433 TCCCGTGTCTCTGTTACCTCAGCATTATGAAGGGTAGATTAACTAACTTTCAAATCGGAA 1492
Query 1519 TTTGTATTTTAATCGTGATAATCGGCATTGTAAGCGGTTGTTGCGGGACTTATTCTGCTA 1578
||||||||||||||||||| || ||| |||| |||||||||||||||||||| ||||| |
Sbjct 1493 TTTGTATTTTAATCGTGATCATAGGCGTTGTGAGCGGTTGTTGCGGGACTTACTCTGCAA 1552
Query 1579 TCGCCAGATTAATCGGCGAAATGACCTGATTGGTTTTGCAGAATAAGTACGTATATTCGA 1638
||||||||||||||||||| ||||||| | ||||||||||||||||||| ||| | |||
Sbjct 1553 TCGCCAGATTAATCGGCGAGATGACCTAACTGGTTTTGCAGAATAAGTA--TAT-T-CGA 1608
Query 1639 AGGAATAAACCGG-TA-TATAC-TTGAATAAAACCGGTTTTTGATAAACCAATGGTTTTT 1695
||||||||||||| | ||||| |||||||||||||||||||||||||||| | |||||
Sbjct 1609 AGGAATAAACCGGATGGTATACCTTGAATAAAACCGGTTTTTGATAAACCATTATTTTTT 1668
Query 1696 TGTGTGAAGATAATCCAATTTGAtttttttttttGGT-ATTTTATTCATAGTTTTAAGTC 1754
| |||| || | | ||| |||| | ||| | || | | |||||||| |||
Sbjct 1669 T-TGTGT-GA-A-T----TTT--TTTTGGTATTTATTCATAA-ACCC-TAGTTTTA-GTC 1715
Query 1755 CATTTTACTCAATGT-AGTCTTCAtttttttttttCATTTGCTCATTTAAAAA-TAAATA 1812
||||||||||||| | |||||||||||||||| | || ||||||| ||||| ||| ||
Sbjct 1716 CATTTTACTCAATTTTAGTCTTCATTTTTTTTCG-C-TT-GCTCATT-AAAAACTAA-TA 1770
Query 1813 AATAACAGAATATTTTGG 1830
||||| ||||||||||||
Sbjct 1771 AATAAGAGAATATTTTGG 1788
> Ahg486995 jgi|Araly1|486995|fgenesh2_kg.6__129__AT5G02180.1
Length=1937
Score = 416 bits (225), Expect = 3e-115
Identities = 900/1216 (74%), Gaps = 85/1216 (7%)
Strand=Plus/Plus
Query 435 TTCTCTCAATCCGTTCTCAACGGAATTAACGTTCTATGTGGAGTAGCTTTACTTACAATG 494
|||||||||||||| |||||||||| || || || |||||| ||| ||| | ||||||
Sbjct 620 TTCTCTCAATCCGTCCTCAACGGAACCAATGTACTGTGTGGATTAGGGTTAATAACAATG 679
Query 495 CCTTACGC-AGTTAAAGAAGGAGGATGG-TTAGGGCTTT--TCATACTCTTCTCCTTTGG 550
||||| || | | |||||| | |||||| || || ||| | |||||||| | ||| ||
Sbjct 680 CCTTATGCTA-TAAAAGAAAGTGGATGGCTT--GG-TTTGGTAATACTCTTGTTCTTCGG 735
Query 551 CA-TTATCACTTTCTACACCGGCATTCTCCTCAAGAGATGTCTCGAGAA-CTCCCCTGGA 608
| | ||||||| |||||| || ||||| | ||||||||||| || || || |||||
Sbjct 736 -AGTCATCACTTGCTACACAGGTGTTCTCATGAAGAGATGTCTAGA-AAGTTCTCCTGGT 793
Query 609 ATCCACACTTACCCGGACATCGGTCAAGCTGCATTCGGAACCACTGGACGCATCCTCGTC 668
| || |||||||| || ||||||||||| || || |||| ||| || ||| || || |
Sbjct 794 CTTCAAACTTACCCCGATATCGGTCAAGCCGCCTTTGGAATCACCGGTCGCTTCATCATA 853
Query 669 TCTATACTTCTCTACGTAGAGTTATACGCATCTTGTGTGGAATACATAATCATGATGAGT 728
|| || ||||| ||||| ||||| |||||| ||||||||||||||||||||||||||||
Sbjct 854 TCCATTCTTCTATACGTGGAGTTGTACGCAGCTTGTGTGGAATACATAATCATGATGAGC 913
Query 729 GATAATTTGTCAAGAATGTTCCCAAATACCTC-CTTATACAT--CAAC-GG-ATTTTCTT 783
|| || || ||| || | |||||||| || || | ||| | | || || | ||
Sbjct 914 GACAACTTATCAGGACTATTCCCAAACGTTTCACTGAG-CATTGCTTCAGGGATAT-CTC 971
Query 784 TAGATTCTACTCA-AGT-TTTCGCCAT-T-ACCACGACTCTTATTGTTCTTCCTACTGTC 839
|||||||| |||| | | ||| || || | | | | |||||| |||||||||| || |||
Sbjct 972 TAGATTCTCCTCAGA-TCTTT-GCAATCTTAAC-C-ACTCTTCTTGTTCTTCCAACAGTC 1027
Query 840 TGGCTCAAAGACCTCAGCTTA-TTGTCCTATCTCTCAGCCGGAGGTGTCATCTCCTCAAT 898
||||| ||||| || ||||| || || || || |||| ||||| ||| | | |||||
Sbjct 1028 TGGCTTAAAGATCTTAGCTTGCTT-TCTTACCTTTCAGTTGGAGGAGTCTTGGCGTCAAT 1086
Query 899 CTTGCTTGCG-CTTTGCCTCTTT-TGGG-CTGGATCAGTAGACGGGGTTGGATTTCACAT 955
||| || | | || ||||| ||| |||| | || | || || || | || || | |||
Sbjct 1087 CTTACTCG-GTCTCTGCCT-TTTCTGGGTC-GGTTTGGTTGATGGAATAGGGTT-C-CAT 1141
Query 956 --AAGC-GGACAAGCTCTT-GATATAACTAACATACCTGTCGCAATCGGAATTTACGGGT 1011
|| | |||| || | || ||| | | |||| |||||||| | || || |||| |||||
Sbjct 1142 GCAA-CAGGACGAGTT-TTCGATCTTAGTAACTTACCTGTCACTATAGGGATTTTCGGGT 1199
Query 1012 TCGGTT--TCGGGAGTCACTCTGTTTTCCCCAACATTTACTCATCCATGAAAGAACCTTC 1069
| |||| ||||| ||| || ||||| ||||| || || || |||||||| || |||||
Sbjct 1200 TTGGTTACTCGGG--TCATTCGGTTTTTCCCAATATCTATTCTTCCATGAAGGATCCTTC 1257
Query 1070 CAAG-TTTCCTACG-GTGCTTC-TCATCAGTTTTGCGTTT-TGCACTCTATTTTACATTG 1125
||| |||||| | || ||| ||||| | ||| |||| ||||| | || ||||| |
Sbjct 1258 -AAGGTTTCCT-CTTGT-CTTAGTCATCTGCTTTA-GTTTCTGCACGGTCTTGTACATAG 1313
Query 1126 CGGTAGCGGTTTGTGGATTCACGATGTTTGGTGATGCGATTC-AATCCCAATTTACACTG 1184
| || ||||| || || | ||| |||||||| || || | || |||| ||||| ||| |
Sbjct 1314 CTGTTGCGGTCTGCGGCTACACCATGTTTGGCGAAGC-AGTCGAATCACAATTCACATTA 1372
Query 1185 AACATGCCACCACATTTCACCTC-ATCTAAAATCGCAGTCTGGACAGCGGTCGTAACACC 1243
||||||||| ||| ||| || ||||||| |||||||||||||||||||| | |||||
Sbjct 1373 AACATGCCAAAACAATTCTT-TCCATCTAAAGTCGCAGTCTGGACAGCGGTCATCACACC 1431
Query 1244 AATGACGAAATACGCTTTAACGATCACTCCAGTAATGCTAAGCCTAGAAGAACTCATACC 1303
|||||| |||||||| ||||| | ||| ||| | | | || || |||||||||||
Sbjct 1432 AATGACAAAATACGCGTTAACAACCACCCCAATCGTTATGAGTCTCGAAGAACTCAT--- 1488
Query 1304 GTCTTCATCAAGA-AAGATGAGATC-CAAAGGTGTCTCTATGCTCTTTAGAACCATAT-T 1360
|| || || | ||||||| ||| || ||||| || || | || ||||| | |
Sbjct 1489 -TC--CAACA-GCTAAGATGAAATCACAT-GGTGTATCGATATTATTCAGAAC-AGCCCT 1542
Query 1361 AGTT-CTCTCCACTTTGGTCGTTGCACTCACAGTTCCATTCTTCGCTA-CTGTGGCGGCT 1418
|||| | ||| |||||||| ||||| || ||||||| |||||||| | | ||||| ||
Sbjct 1543 AGTTAC-CTCTACTTTGGTGGTTGCTCTTTCAGTTCCTTTCTTCGCGATC-GTGGCAGCA 1600
Query 1419 CTGATTGGATCTTTCATCGCAATGCTTATCGCG-TTAATATTCCCGTGTCTCTGTTATAT 1477
|| || ||||| ||| | ||||||||| | || ||| | ||||| ||||| |||||| |
Sbjct 1601 CTAATCGGATCGTTCCTTGCAATGCTTGTGGCTCTTA-TCTTCCCATGTCTATGTTATCT 1659
Query 1478 CAGCATTATGAAGGGTAGATTAA-CTAACTTTCAGATTGGAATT-TGTATTTTAATCGTG 1535
||| || | ||||||| ||||| | ||| || |||||| || || || || || |
Sbjct 1660 CAGTATCCTCAAGGGTAAATTAAGC-AACACACAAATTGGA-TTATGCATATTCATTAT- 1716
Query 1536 A-TAATCGGCATTG-TAAGCGGTTGTTGCGGGACTTATTCTGCTATCGCCAGATTAATCG 1593
| | |||| ||| | || |||||||| || ||||| || |||||| | |||||| |
Sbjct 1717 ACTCTTCGGG-TTGGTGAGTGGTTGTTGTGGTACTTACTCGGCTATCTCAAGATTAGCCA 1775
Query 1594 GCGAAATGACCTGATT 1609
| ||||||| |||||
Sbjct 1776 ACCAAATGACATGATT 1791
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68714801980
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5