BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G02180.1
Length=2007
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486995 jgi|Araly1|486995|fgenesh2_kg.6__129__AT5G02180.1 2815 0.0
> Ahg486995 jgi|Araly1|486995|fgenesh2_kg.6__129__AT5G02180.1
Length=1937
Score = 2815 bits (1524), Expect = 0.0
Identities = 1822/1958 (93%), Gaps = 51/1958 (3%)
Strand=Plus/Plus
Query 1 AAATAGTTTTCTCTCCATTGATATGTTTCCGTATATAGAAGAAATCTCTTTGACTCGCCG 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 AAATAGTTTTCTCTCCATTGATATGTTTCCATATATAGAAGAAATCTCTTTGACTCGCCG 60
Query 61 GAAAACAAAACCCCGTTGTTCTCCGTCTAtctctccctctctctctctGCACATTTCTTC 120
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAAAACAAAATCCCGTTGTTCTCCGTCTATCTCTCCCTCTCTCTCTCTGCACATTTCTTG 120
Query 121 TACCTTTCTTTGAGATTTGAGAAAACAGAGGAAGAAGATGAAACTCGACGAAGAATTCTT 180
| | ||||||||||||||||||||||| |||| || ||||||||||||||||||||||||
Sbjct 121 TGCGTTTCTTTGAGATTTGAGAAAACATAGGAGGACGATGAAACTCGACGAAGAATTCTT 180
Query 181 ACACGACAGAGACCATTCGTTTCTGACAGATGACGAGGAAAATCAAGCAGCACTTGCTTG 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 181 ACACGACAGAGACCATTCGTTTCTGACAGATGACGAGGAAAATCAAGCAGAACTTGCTTG 240
Query 241 TTCCGACGATGAACACGACGGAGACGACGACGGTCGGAGAGGCGGAGAAAATTCAGATTC 300
||| ||||||| | || || | |||| ||| ||||| ||||| |||||||||||
Sbjct 241 TTCAGACGATG-A-AC-AC----A--ACGATGGTAAGAGAGACGGAGCGAATTCAGATTC 291
Query 301 CTCCTCTCCGTTATCACGAGACCGTTCTGATAACAATCTCTCGGATGTCTCAAACCCTCC 360
||||||||||||||| |||||||||||||||||||||||||| |||||||| || |||||
Sbjct 292 CTCCTCTCCGTTATCTCGAGACCGTTCTGATAACAATCTCTCTGATGTCTCGAATCCTCC 351
Query 361 ATGGCCACAAAGCTATCGACAATCAATGGATTTGTTGACCGGAATGACTCCACCTTCGGT 420
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 352 ATGGCCACAAAGCTATCGACAATCAATGGATCTGTTGACCGGAATGACTCCACCTTCGGT 411
Query 421 GAGTTTCATGCCTCAAAGCAGTTCCCGGAGATTAGCCTCTTCCTTCCAGAAGAAGCAACA 480
|||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 412 GAGTTTCATGCCTCGAAGCAGTTCCCGGAGATTAGCCTCTTCCTTCCATAAGAAGCAACA 471
Query 481 ATCTTCGTTTTG-CGATTCGTTGTCTTCTTCCTCAAGCAAACCCCTTCTCTCTCAACCAG 539
|||||| ||||| ||||||||| |||||||||||||||||||| |||||||||||| |||
Sbjct 472 ATCTTC-TTTTGTCGATTCGTTTTCTTCTTCCTCAAGCAAACCACTTCTCTCTCAAACAG 530
Query 540 -TTCCTGACAAAGAAGAAACGATTTTACCCGTCAACCCTCAATCTCAGCTCAAGCTCTCC 598
|||| |||||||||||||||| || | | |||||||||||||||||||||||
Sbjct 531 TTTCC-GACAAAGAAGAAACGA---TA----T-TA-CCTCAATCTCAGCTCAAGCTCTCT 580
Query 599 GTCACCGATCTTCCATTACCGGAACCTAACCTCTGCTCCTTCTCTCAATCTGTTCTCAAT 658
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 581 GTCACCGATCTTCCATTACCGGAACCTAACCTCTGCTCCTTCTCTCAATCCGTCCTCAAC 640
Query 659 GGAACCAATGTACTGTGTGGATTAGGGTTAATAACAATGCCTTACGCTATTAAAGAAAGT 718
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 641 GGAACCAATGTACTGTGTGGATTAGGGTTAATAACAATGCCTTATGCTATAAAAGAAAGT 700
Query 719 GGATGGCTTGGTCTGCCCATACTCTTGTTCTTCGGAGTCATAACTTGCTACACAGGTGTT 778
|||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 701 GGATGGCTTGGTTTGGTAATACTCTTGTTCTTCGGAGTCATCACTTGCTACACAGGTGTT 760
Query 779 CTCATGAAAAGATGTCTAGAAAGTTCCCCTGGTATTCAAACTTACCCCGATATCGGTCAA 838
|||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 761 CTCATGAAGAGATGTCTAGAAAGTTCTCCTGGTCTTCAAACTTACCCCGATATCGGTCAA 820
Query 839 GCCGCCTTTGGAATCACCGGTCGCTTCATCATCTCTATTCTTCTATACGTGGAGTTGTAC 898
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 821 GCCGCCTTTGGAATCACCGGTCGCTTCATCATATCCATTCTTCTATACGTGGAGTTGTAC 880
Query 899 GCAGCTTGTGTGGAATACATAATCATGATGAGCGATAACTTATCAGGGCTATTCCCAAAC 958
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 881 GCAGCTTGTGTGGAATACATAATCATGATGAGCGACAACTTATCAGGACTATTCCCAAAC 940
Query 959 GTTTCATTGAGCATTGCTTCAGGGATATCTTTAGATTCTCCTCAGATCTTTGCAATCTTA 1018
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 941 GTTTCACTGAGCATTGCTTCAGGGATATCTCTAGATTCTCCTCAGATCTTTGCAATCTTA 1000
Query 1019 ACCACTCTTCTTGTTCTTCCAACTGTCTGGCTTAAAGATCTTAGCTTGCTTTCTTACCTT 1078
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1001 ACCACTCTTCTTGTTCTTCCAACAGTCTGGCTTAAAGATCTTAGCTTGCTTTCTTACCTT 1060
Query 1079 TCAGTTGGAGGAGTCTTGGCGTCAATCTTACTCGGTATCTGCCTCTTCTGGGTCGGTGCA 1138
|||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 1061 TCAGTTGGAGGAGTCTTGGCGTCAATCTTACTCGGTCTCTGCCTTTTCTGGGTCGGTTTG 1120
Query 1139 GTCGATGGAATAGGGTTTCATGCAACAGGACGAGTTTTCGAT-TTAAGTAACTTACCTGT 1197
|| |||||||||||||| |||||||||||||||||||||||| || ||||||||||||||
Sbjct 1121 GTTGATGGAATAGGGTTCCATGCAACAGGACGAGTTTTCGATCTT-AGTAACTTACCTGT 1179
Query 1198 CACTATAGGGATTTTTGGATTTGGTTACTCGGGTCATTCGGTTTTTCCCAATATCTATTC 1257
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1180 CACTATAGGGATTTTCGGGTTTGGTTACTCGGGTCATTCGGTTTTTCCCAATATCTATTC 1239
Query 1258 TTCAATGAAAGATCCTTCAAGGTTTCCTCTTGTCTTAGTTATCTGCTTTAGTTTCTGCAC 1317
||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1240 TTCCATGAAGGATCCTTCAAGGTTTCCTCTTGTCTTAGTCATCTGCTTTAGTTTCTGCAC 1299
Query 1318 GGTCTTGTACATAGCTGTTGCGGTCTGCGGCTACACCATGTTTGGCGAAGCAGTGGAATC 1377
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1300 GGTCTTGTACATAGCTGTTGCGGTCTGCGGCTACACCATGTTTGGCGAAGCAGTCGAATC 1359
Query 1378 ACAGTTCACATTGAACATGCCTAAGCACTTCTTTCCATCTAAAGTCGCGGTCTGGACAGC 1437
||| |||||||| |||||||| || || |||||||||||||||||||| |||||||||||
Sbjct 1360 ACAATTCACATTAAACATGCCAAAACAATTCTTTCCATCTAAAGTCGCAGTCTGGACAGC 1419
Query 1438 GGTCATTACACCGATGACCAAATACGCTTTAACAATCACCCCAATAGTTATGAGTCTCGA 1497
|||||| ||||| ||||| |||||||| ||||||| ||||||||| ||||||||||||||
Sbjct 1420 GGTCATCACACCAATGACAAAATACGCGTTAACAACCACCCCAATCGTTATGAGTCTCGA 1479
Query 1498 AGAACTCATTCCAACAGCTAAGATGAGATCACGTGGTGTATCGATATTATTTAGAACAAT 1557
|||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||
Sbjct 1480 AGAACTCATTCCAACAGCTAAGATGAAATCACATGGTGTATCGATATTATTCAGAACAGC 1539
Query 1558 GCTAGTTACCTCTACTTTGGTGGTTGCTCTTTCAGTTCCTTTCTTCGCGATCGTGGCAGC 1617
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1540 CCTAGTTACCTCTACTTTGGTGGTTGCTCTTTCAGTTCCTTTCTTCGCGATCGTGGCAGC 1599
Query 1618 ACTAATCGGATCGTTCCTTGCAATGCTTGTGGCTCTTATCTTCCCATGTCTATGTTATCT 1677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1600 ACTAATCGGATCGTTCCTTGCAATGCTTGTGGCTCTTATCTTCCCATGTCTATGTTATCT 1659
Query 1678 CAGTATCCTCAAGGGTAAATTAAGCAACACACAAATTGGATTATGCATATTCATTATAGT 1737
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1660 CAGTATCCTCAAGGGTAAATTAAGCAACACACAAATTGGATTATGCATATTCATTATACT 1719
Query 1738 CTTCGGGGTGGTTAGTGGTTGTTGTGGTACTTACTCGGCTATCTCAAGATTAGCCAACCA 1797
||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1720 CTTCGGGTTGGTGAGTGGTTGTTGTGGTACTTACTCGGCTATCTCAAGATTAGCCAACCA 1779
Query 1798 AATGACA-GATTAACTGAAATTTTCGACGGCGATTTAAAATTAGGTGTGTTGTGTTCTAA 1856
||||||| ||||||||||||||| | ||| | |||||||||||||||||
Sbjct 1780 AATGACATGATTAACTGAAATTT---A-----ATT-A------GGTGTGTTGTGTTCTAA 1824
Query 1857 T----GTTTATTATATTATCTAGTTTTTATTCAGTTTTGGTTCAGATTTCT-TTTAATTG 1911
| |||||| |||||||||||||||| |||||||||||||||||||| | |||| ||
Sbjct 1825 TTAATGTTTAT-ATATTATCTAGTTTTTCTTCAGTTTTGGTTCAGATTT-TGTTTA-TT- 1880
Query 1912 TTTTAGGAAACAAGCAGAGATAAAACCACATATACTTC 1949
|| || |||||||| ||||||||||||||||||||||
Sbjct 1881 TT--AGAAAACAAGCCGAGATAAAACCACATATACTTC 1916
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75456775345
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5