BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G02190.1
Length=1687
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939595 jgi|Araly1|939595|scaffold_600139.1 2082 0.0
> Ahg939595 jgi|Araly1|939595|scaffold_600139.1
Length=1402
Score = 2082 bits (1127), Expect = 0.0
Identities = 1320/1410 (94%), Gaps = 25/1410 (2%)
Strand=Plus/Plus
Query 96 TCAAAATATCGTCATCATGTTCTCAAGATTCCATGCTCTG--------T-TTCTTCTCCT 146
|||| ||||| ||||||||||||||||||||||||||||| | ||||||||||
Sbjct 5 TCAATATATCCTCATCATGTTCTCAAGATTCCATGCTCTGTTTCCTCTTCTTCTTCTCCT 64
Query 147 TG---TTCTTTCAGTAAGAACATATAAATGTGTAtcttcatcttcttcttcttcttcttc 203
|| |||||||| ||||||| |||||||||| | | |||||||||||||||||
Sbjct 65 TGTAATTCTTTCAATAAGAACCTATAAATGTG-------A-C-TCTTCTTCTTCTTCTTC 115
Query 204 tttctcattctcttcattttcttcttcgtcttcttctcaaactcttgtcttgcctctAAA 263
|||||| || |||||| || |||||| |||||||||||||||||||| |||||||||||
Sbjct 116 TTTCTCGTTTTCTTCA--TT-TTCTTCATCTTCTTCTCAAACTCTTGTTTTGCCTCTAAA 172
Query 264 GACCCGAATAACCCCAACGGATCATCGACCCACCGACAAACTTCATTTCCACCACAACGT 323
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 173 GACCCGAATAACCCCAACGGATCATCAACCCACCGACAAACTTCATTTCCACCACAACGT 232
Query 324 CACTCTCACCGTTACTCTCACCGTCGGTACTCCTCCTCAAAACATCTCCATGGTCATTGA 383
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 233 CACTCTCACTGTTACTCTCACCGTCGGTACTCCTCCTCAAAACATCTCCATGGTCATTGA 292
Query 384 CACTGGCAGTGAACTCTCCTGGCTTCGTTGCAACCGTTCCTCAAACCCAAACCCGGTTAA 443
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 293 CACTGGCAGCGAACTCTCCTGGCTTCGTTGCAACCGTTCCTCAAACCCAAACCCGGTTAA 352
Query 444 CAATTTTGACCCGACCCGTTCCTCCTCTTATTCCCCAATCCCCTGTTCCTCACCCACTTG 503
||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 353 TAATTTCGACCCGACCCGTTCTTCCTCTTATTCTCCAATCCCCTGTTCCTCACCCACTTG 412
Query 504 TCGTACCCGGACCCGAGACTTCCTCATACCCGCTTCTTGCGATTCAGACAAACTCTGCCA 563
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 TCGGACCCGGACCCGAGACTTCCTCATACCCGCTTCTTGCGATTCAGACAAACTCTGCCA 472
Query 564 CGCAACTCTATCCTACGCCGACGCTTCCTCCTCCGAAGGTAACCTCGCCGCCGAGATTTT 623
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 473 CGCAACTCTTTCCTACGCTGACGCTTCCTCCTCCGAAGGTAACCTCGCCGCCGAGATTTT 532
Query 624 CCACTTCGGAAACTCCACCAACGACTCCAATCTCATTTTCGGGTGTATGGGTTCCGTATC 683
||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 533 CCACTTCGGAAACTCGACCAACGACTCCAACCTCATTTTCGGGTGTATGGGATCCGTATC 592
Query 684 CGGATCCGACCCGGAAGAAGATACCAAAACAACTGGGTTATTGGGTATGAACCGTGGTTC 743
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 593 CGGATCCGACCCGGAAGAAGATACCAAAACAACCGGGTTATTGGGTATGAACCGTGGTTC 652
Query 744 CCTCTCTTTTATCTCTCAAATGGGTTTCCCCAAATTCTCTTATTGCATCTCCGGCACCGA 803
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 653 CCTCTCTTTCATCTCTCAGATGGGTTTCCCCAAATTCTCTTATTGCATCTCCGGCACCGA 712
Query 804 CGACTTCCCGGGGTTTCTTCTCCTCGGCGACTCTAACTTCACGTGGTTAACGCCGTTAAA 863
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 713 CGATTTCCCGGGGTTTCTTCTCCTCGGCGACTCTAATTTCACGTGGTTAACGCCGTTAAA 772
Query 864 TTACACGCCGTTAATTCGTATCTCTACGCCGTTACCTTACTTCGACCGTGTAGCTTACAC 923
||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||
Sbjct 773 TTACACGCCGTTAATCCGGATCTCCACGCCGTTACCTTACTTCGACCGTGTAGCTTACAC 832
Query 924 CGTCCAGCTCACGGGTATTAAAGTTAACGGTAAGCTTTTACCCATCCCTAAATCGGTTCT 983
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 833 CGTCCAGCTCACGGGTATTAAAGTTAACGGTAAGCTTTTACCCATCCCTAAATCGGTCCT 892
Query 984 CGTACCGGATCATACCGGTGCTGGTCAAACCATGGTTGATTCCGGTACTCAGTTTACTTT 1043
| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 CCTACCGGATCACACCGGTGCTGGTCAAACCATGGTTGATTCCGGTACTCAGTTTACTTT 952
Query 1044 CCTGCTTGGACCGGTTTACACCGCACTTCGATCCCATTTCTTAAACCGGACAAACGGAAT 1103
| |||||||||||||||||||||| |||||||| |||||||||||| ||||||||| ||
Sbjct 953 CTTGCTTGGACCGGTTTACACCGCTCTTCGATCTGATTTCTTAAACCAGACAAACGGGAT 1012
Query 1104 CTTAACGGTTTACGAAGACCCAGATTTTGTTTTCCAAGGAACCATGGATTTGTGTTATCG 1163
||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||
Sbjct 1013 CTTAACGGTTTACGAAGACCCGGATTTTGTTTTCCAAGGAACCATGGATTTGTGCTACCG 1072
Query 1164 GATTTCACCGGTTCGTATACGGTCCGGAATTCTCCACCGTTTACCAACAGTTTCTCTGGT 1223
|||||||||| |||| || ||| |||| ||||||||||| |||||||| |||||||||||
Sbjct 1073 GATTTCACCGTTTCGGATTCGGACCGGGATTCTCCACCGGTTACCAACGGTTTCTCTGGT 1132
Query 1224 TTTCGAAGGAGCCGAGATAGCGGTTTCGGGTCAGCCGCTATTGTACCGAGTCCCGCATCT 1283
||| |||||||| ||||||||||||||||||||||| ||||| ||||||||||| |||||
Sbjct 1133 TTTTGAAGGAGCTGAGATAGCGGTTTCGGGTCAGCCACTATTATACCGAGTCCCACATCT 1192
Query 1284 CACGGTTGGAAACGATTCGGTTTATTGTTTCACATTTGGAAACTCCGACCTTATGGGAAT 1343
||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1193 CACGGCTGGGAACGATTCGGTTTATTGTTTCACATTTGGAAACTCCGATCTTATGGGAAT 1252
Query 1344 GGAGGCTTACGTGATTGGACATCATCATCAGCAGAACATGTGGATCGAATTTGATCTACA 1403
||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1253 GGAAGCATACGTGATTGGACACCATCATCAGCAGAACATGTGGATCGAATTTGATCTACA 1312
Query 1404 AAGATCAAGAATCGGTTTAGCTCCGGTAGAATGTGATGTATCGGGTCAGAGACTCGGAAT 1463
||||||||||||||||||||||||||| | ||||||||||| ||||| |||||||||||
Sbjct 1313 GAGATCAAGAATCGGTTTAGCTCCGGTACAGTGTGATGTATCTGGTCAAAGACTCGGAAT 1372
Query 1464 CGGATCGTAAA-CCATAGATAACCAGTGTG 1492
||||||||||| |||||||||||| |||||
Sbjct 1373 CGGATCGTAAAACCATAGATAACCTGTGTG 1402
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63267896945
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5