BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G02200.2
Length=708
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486997 jgi|Araly1|486997|fgenesh2_kg.6__131__AT5G02200.1 929 0.0
> Ahg486997 jgi|Araly1|486997|fgenesh2_kg.6__131__AT5G02200.1
Length=1250
Score = 929 bits (503), Expect = 0.0
Identities = 572/606 (94%), Gaps = 2/606 (0%)
Strand=Plus/Plus
Query 103 AGCGATATCAACGATCCGATGATAGTTGCTGTGGAATCTCTAGACACAAGCAAAAAGAGA 162
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 646 AGCGATATCAACGATCCGATGATAGTTGCTGTGGAATCTCTAGACTCAAGCAAAAAGAGA 705
Query 163 AAACTGCATGCTGAAGAATCAGACTTGTTACCCTTACCAAAACACTTTTGTTCT-GAGCA 221
||||||| ||||||||||| ||||||||||||| |||||||||||||||| ||| |||||
Sbjct 706 AAACTGCGTGCTGAAGAATTAGACTTGTTACCCCTACCAAAACACTTTTG-TCTGGAGCA 764
Query 222 TCAAGCCTCTCTTGTTAATTCTTCATGTCCATCATCAGTTATAGATTATGCAGAATGCTC 281
||||| ||||||||| ||||||||| ||||||||||| |||||| ||||||||||||||
Sbjct 765 ACAAGCTTCTCTTGTTGATTCTTCATTTCCATCATCAGATATAGAATATGCAGAATGCTC 824
Query 282 TTATGCCATGGAGAACACAAAAACCAGCGATGAAGCCTCCTCTTCTGCATCTTTTACAGG 341
||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 825 TTATGCCATGGAGGACACAAAAACCAGCGATGAGGCCTCCTCTTCTGCATCCTTTACAGG 884
Query 342 CCCTTCTTTGTACATGTTTAAAGACTCTATTTATTCAACCGGAAGTTCTAGTTCTGGTTA 401
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 885 CCCTTCTTTGTACATGTTTAAAGACTCTATTTATTCTACCGGAAGTTCTAGTTCTGGTTA 944
Query 402 TGCTGCTACATCAAGCATAGAACAATGCTTTTCCAAAGTTGATCACAAAACACAAGAAGA 461
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 945 TGCTGCTACATCAAGCATAGAACAATGTTTTTCCAAAGTTGATCACAAAACACAAGAAGA 1004
Query 462 TACCCAAGACTTTACTCACATGGAATTCATTTATCACGACTCCGAATTTGCGGTCGAAGA 521
| | ||||||||||||||||||||||||||| |||||||||||| |||||||| |||||
Sbjct 1005 TGCTGAAGACTTTACTCACATGGAATTCATTTGTCACGACTCCGAGTTTGCGGTTGAAGA 1064
Query 522 TCTTCAAGAGGTTCTGAATCCAGTTGAGTCTTATATTCTTTCTTCTGCAAGGTGGAGTGT 581
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 1065 TCTTCAAGAGGTTCTGAATCCAGTTGGGTCTTATGTTCTTTCTTCTGCAAGGTGGAGTGT 1124
Query 582 CAGCAACCAAGATTCCAAAGAAGCTACCACGAAACCAACCATTGATCAAGAGTTTGAGCA 641
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1125 TGGCAACCAAGATTACGAAGAAGCTACCACGAAACCAACCATTGATCAAGAGTTTGAGCA 1184
Query 642 GTACTTTTCTACACTCATGATGTAAACAACAAGAATCTATCTACATATTTATCAATATCA 701
||||||||| ||||||||||||||||||||| |||| ||||||||||| ||||| |||||
Sbjct 1185 GTACTTTTCAACACTCATGATGTAAACAACATGAATTTATCTACATATGTATCAGTATCA 1244
Query 702 CTAATC 707
||||||
Sbjct 1245 CTAATC 1250
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26037952311
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5