BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G02210.1

Length=486
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg324894 jgi|Araly1|324894|fgenesh1_pm.C_scaffold_6000114           460    3e-129
  Ahg920124 jgi|Araly1|920124|scaffold_101405.1                       71.3    6e-12 


> Ahg324894 jgi|Araly1|324894|fgenesh1_pm.C_scaffold_6000114
Length=441

 Score =  460 bits (249),  Expect = 3e-129
 Identities = 299/324 (92%), Gaps = 0/324 (0%)
 Strand=Plus/Plus

Query  163  GAAAGCCATGTGAAGACTTTCCTGTCTTCAACTACTGTTTCCCTAGACGAAATAAACGAA  222
            ||||||| |||||||||||||||  |||||||||||||||||||| ||||||||||||||
Sbjct  118  GAAAGCCTTGTGAAGACTTTCCTACCTTCAACTACTGTTTCCCTAAACGAAATAAACGAA  177

Query  223  GAGGAAGATCAGAAGTTTGTAGAATTCATGAAAGGAGGTGGTTGCAAAGAATCATTTACG  282
            || |||||| |||||||||||||||||||||||||||||||||||||||||||||  || 
Sbjct  178  GATGAAGATGAGAAGTTTGTAGAATTCATGAAAGGAGGTGGTTGCAAAGAATCATACACT  237

Query  283  GCTTGGAATGATGATTGCAATTTCACTGAGGAGGAAGCTGAGAAGAACAAAGATTTGGTT  342
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  238  GCTTGGCATGATGATTGCAATTTCACTGAGGAGGAAGCTGAGAAGAACAAAGATTTGGTT  297

Query  343  ACTAAGTGTGCGGGACTCTTTGGGACGTTTTCCAAGTGTATGGATACTCACTCTGATTAC  402
            ||||||||||||||||||||||||| | | ||||||||| |||||  |||||||||||||
Sbjct  298  ACTAAGTGTGCGGGACTCTTTGGGAAGCTATCCAAGTGTCTGGATGTTCACTCTGATTAC  357

Query  403  TATCATCCGATTCTCGCAGTGAAGAAAACTACCGAAGAACATTTGGAGAAAGAGCTCGCA  462
            |||||||| |||||||| |||| ||||||||| ||||||||||||||||| |||||||||
Sbjct  358  TATCATCCAATTCTCGCGGTGAGGAAAACTACTGAAGAACATTTGGAGAAGGAGCTCGCA  417

Query  463  ACTTTCTTCTTGGAAGAAAGCTAA  486
             ||||||||  ||||| |||||||
Sbjct  418  GCTTTCTTCGCGGAAGGAAGCTAA  441


> Ahg920124 jgi|Araly1|920124|scaffold_101405.1
Length=601

 Score = 71.3 bits (38),  Expect = 6e-12
 Identities = 50/55 (91%), Gaps = 3/55 (5%)
 Strand=Plus/Plus

Query  246  ATTCATGAAAGGAGGTGGTTGCAAAGAATCATTTACGGCTTGGAATGATGATTGC  300
            |||||||| ||||||||||||||||||||||||||||||||  | ||| ||||||
Sbjct  113  ATTCATGATAGGAGGTGGTTGCAAAGAATCATTTACGGCTT--A-TGAAGATTGC  164



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17627882118


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5