BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G02220.1

Length=440
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg486999 jgi|Araly1|486999|fgenesh2_kg.6__133__AT5G02220.1          451    2e-126
  Ahg915057 jgi|Araly1|915057|Al_scaffold_0009_26                      189    1e-47 


> Ahg486999 jgi|Araly1|486999|fgenesh2_kg.6__133__AT5G02220.1
Length=338

 Score =  451 bits (244),  Expect = 2e-126
 Identities = 319/352 (91%), Gaps = 17/352 (5%)
 Strand=Plus/Plus

Query  36   GAGAGAAGAATGGAGGTGGTGGAGAGGA-AGACGGAGATGGCGGAGGAAGGATGTACGAC  94
            ||||||||||||||||||||||||| ||  |||||| |||||||||||||||||||||||
Sbjct  1    GAGAGAAGAATGGAGGTGGTGGAGA-GAGCGACGGAAATGGCGGAGGAAGGATGTACGAC  59

Query  95   GCCGAGAAGCACGATGTATAGGATTCCGGTGGCGTCTGTTTGTCCACCGCCGCCGAGGAA  154
            ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  60   GCCGAGAAGCAGGATTTATAGGATTCCGGTGGCGTCTGTTTGTCCACCGCCGCCGAGGAA  119

Query  155  GAAGTTGATGGTGGTGAGAAAACGAGATCCGCCGAGGAACGGGTACTTTCAGCCACCAGA  214
            ||| |||||||||||||| |||||||||||||||||||||||||| ||||| ||||| ||
Sbjct  120  GAAATTGATGGTGGTGAGGAAACGAGATCCGCCGAGGAACGGGTATTTTCAACCACCGGA  179

Query  215  TCTTGAAACTTTGTTCTACGCACAGCCTCGAAGAGAAGCTTGCGCTTAGATTTTGAGATT  274
            ||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct  180  TCTGGAAACTTTGTTCTACGCACAGCCTCGAAGAAAAGCTTGCGCTTAGATATTGAGATT  239

Query  275  TGATTTGATTTGAATTATCTAGGttttttttttACTTTCTTCTCTGTAGATACATGTTTA  334
            |||||||||   | || |||||| |||||    |||||||||||||||||||||||||||
Sbjct  240  TGATTTGAT---A-TT-TCTAGGGTTTTT----ACTTTCTTCTCTGTAGATACATGTTTA  290

Query  335  GGGTTTGTTCTCTTA--TTAGATTTTATTTATCTTTCAGAGAGATGACTTTG  384
             | ||||||||||||  |||||||||||  || |  ||||||||||||||||
Sbjct  291  TGATTTGTTCTCTTAGATTAGATTTTATC-AT-T--CAGAGAGATGACTTTG  338


> Ahg915057 jgi|Araly1|915057|Al_scaffold_0009_26
Length=420

 Score =  189 bits (102),  Expect = 1e-47
 Identities = 138/155 (89%), Gaps = 4/155 (3%)
 Strand=Plus/Plus

Query  34   GAGAGAGAAGAATGGAGGTGGTGGAGAGGAAGACGGAGATGGCGGAGGAAGGATGTACGA  93
            |||||||||||||||||||||||||||||| || ||||||| |||||||||||    |||
Sbjct  249  GAGAGAGAAGAATGGAGGTGGTGGAGAGGACGATGGAGATGACGGAGGAAGGA----CGA  304

Query  94   CGCCGAGAAGCACGATGTATAGGATTCCGGTGGCGTCTGTTTGTCCACCGCCGCCGAGGA  153
            |||||||||| | |||||||||||||||||| |||| |||||||| | |||||| |||||
Sbjct  305  CGCCGAGAAGAAGGATGTATAGGATTCCGGTTGCGTTTGTTTGTCTATCGCCGCAGAGGA  364

Query  154  AGAAGTTGATGGTGGTGAGAAAACGAGATCCGCCG  188
            |||| | |||||||||||| |||||||||||||||
Sbjct  365  AGAAATCGATGGTGGTGAGGAAACGAGATCCGCCG  399



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15872725024


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5