BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G02220.1 Length=440 Score E Sequences producing significant alignments: (Bits) Value Ahg486999 jgi|Araly1|486999|fgenesh2_kg.6__133__AT5G02220.1 451 2e-126 Ahg915057 jgi|Araly1|915057|Al_scaffold_0009_26 189 1e-47 > Ahg486999 jgi|Araly1|486999|fgenesh2_kg.6__133__AT5G02220.1 Length=338 Score = 451 bits (244), Expect = 2e-126 Identities = 319/352 (91%), Gaps = 17/352 (5%) Strand=Plus/Plus Query 36 GAGAGAAGAATGGAGGTGGTGGAGAGGA-AGACGGAGATGGCGGAGGAAGGATGTACGAC 94 ||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||| Sbjct 1 GAGAGAAGAATGGAGGTGGTGGAGA-GAGCGACGGAAATGGCGGAGGAAGGATGTACGAC 59 Query 95 GCCGAGAAGCACGATGTATAGGATTCCGGTGGCGTCTGTTTGTCCACCGCCGCCGAGGAA 154 ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 60 GCCGAGAAGCAGGATTTATAGGATTCCGGTGGCGTCTGTTTGTCCACCGCCGCCGAGGAA 119 Query 155 GAAGTTGATGGTGGTGAGAAAACGAGATCCGCCGAGGAACGGGTACTTTCAGCCACCAGA 214 ||| |||||||||||||| |||||||||||||||||||||||||| ||||| ||||| || Sbjct 120 GAAATTGATGGTGGTGAGGAAACGAGATCCGCCGAGGAACGGGTATTTTCAACCACCGGA 179 Query 215 TCTTGAAACTTTGTTCTACGCACAGCCTCGAAGAGAAGCTTGCGCTTAGATTTTGAGATT 274 ||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||| Sbjct 180 TCTGGAAACTTTGTTCTACGCACAGCCTCGAAGAAAAGCTTGCGCTTAGATATTGAGATT 239 Query 275 TGATTTGATTTGAATTATCTAGGttttttttttACTTTCTTCTCTGTAGATACATGTTTA 334 ||||||||| | || |||||| ||||| ||||||||||||||||||||||||||| Sbjct 240 TGATTTGAT---A-TT-TCTAGGGTTTTT----ACTTTCTTCTCTGTAGATACATGTTTA 290 Query 335 GGGTTTGTTCTCTTA--TTAGATTTTATTTATCTTTCAGAGAGATGACTTTG 384 | |||||||||||| ||||||||||| || | |||||||||||||||| Sbjct 291 TGATTTGTTCTCTTAGATTAGATTTTATC-AT-T--CAGAGAGATGACTTTG 338 > Ahg915057 jgi|Araly1|915057|Al_scaffold_0009_26 Length=420 Score = 189 bits (102), Expect = 1e-47 Identities = 138/155 (89%), Gaps = 4/155 (3%) Strand=Plus/Plus Query 34 GAGAGAGAAGAATGGAGGTGGTGGAGAGGAAGACGGAGATGGCGGAGGAAGGATGTACGA 93 |||||||||||||||||||||||||||||| || ||||||| ||||||||||| ||| Sbjct 249 GAGAGAGAAGAATGGAGGTGGTGGAGAGGACGATGGAGATGACGGAGGAAGGA----CGA 304 Query 94 CGCCGAGAAGCACGATGTATAGGATTCCGGTGGCGTCTGTTTGTCCACCGCCGCCGAGGA 153 |||||||||| | |||||||||||||||||| |||| |||||||| | |||||| ||||| Sbjct 305 CGCCGAGAAGAAGGATGTATAGGATTCCGGTTGCGTTTGTTTGTCTATCGCCGCAGAGGA 364 Query 154 AGAAGTTGATGGTGGTGAGAAAACGAGATCCGCCG 188 |||| | |||||||||||| ||||||||||||||| Sbjct 365 AGAAATCGATGGTGGTGAGGAAACGAGATCCGCCG 399 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 15872725024 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5