BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G02230.1
Length=1103
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939600 jgi|Araly1|939600|scaffold_600144.1 1435 0.0
> Ahg939600 jgi|Araly1|939600|scaffold_600144.1
Length=883
Score = 1435 bits (777), Expect = 0.0
Identities = 841/871 (97%), Gaps = 8/871 (1%)
Strand=Plus/Plus
Query 111 AAAATGGAGTTCGAGAACCGGTACGGACTTGCAACGTCGCAGAAGTACGACTGTCTCTTG 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 18 AAAATGGAGTTCGAGAACCGGTACGGACTTGCAACGTCGCAGAAGTACGACTGTCTCTTG 77
Query 171 TTCGATTTGGACGATACTCTTTATCCTCTTAGCTCCGGAATCGCAAGAGAATGTGGGAAC 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 78 TTCGATTTGGACGATACTCTTTATCCTCTTAGCTCCGGAATCGCAAGAGAATGTGGGAAC 137
Query 231 AACATCAAAGATTACATGACCGAGAAACTCGGTATACCTAAGGACAAAATCGTCGAATTG 290
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 138 AACATCAAAGATTACATGACCGAGAAACTCGGTATACCAAAGGACAAAATCTTCGAATTG 197
Query 291 TCTGATCTTCTATACAAGAACTATGGAACAACAATGGCTGGTCTTAGGGCGATCGGATAT 350
|| |||||||| ||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 198 TCCGATCTTCTCTACAAGAACTATGGAACAACAATGGCTGGTCTTAGAGCCATCGGATAT 257
Query 351 GAATTTGACTACGATGAGTACCACAGCTTCGTCCACGGTCGTTTACCCTATGACAACATA 410
|||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||
Sbjct 258 GAATTTGACTACGATGAGTACCACAGTTTCGTCCACGGTCGTTTACCATACGACAACATA 317
Query 411 AAACCCGAC-CTTGTTCTTCGCAGCCTCTTGCTTAGCCTCCCTCTCCGCAAAGTCATCTT 469
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 318 AAACCCGACTCT-GTTCTTCGCAGCCTCTTGCTTAGCCTCCCTCTCCGCAAAGTCATCTT 376
Query 470 TACCAACGCGGACAGAGTTCACGCGGCCAAGGCGTTGAAGAAGTTGGGATTAGAGGATTG 529
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 377 TACCAACGCGGACAGAGTTCACGCGGCCAAGGCGTTGAAGAAGTTGGGACTAGAGGATTG 436
Query 530 TTTCGAAGGAATCATATGTTTCGAAACGCTAAACCTC-ATGCACACAAACGCTGCGTCTA 588
||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||
Sbjct 437 TTTCGAAGGAATCATATGTTTCGAAACGCTAAACC-CGACGCACACAAACGCTGCGTCTA 495
Query 589 ACAATTCCGAGATTTTTGATATCGTTGGACATTTTAACCGGTCTGAACCGGTCGGTTCAC 648
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 496 ACAATTCCGAGATTTTTGATATCGTTGAACATTTTAACCGGTCTGAACCGGTCGGTTCAC 555
Query 649 TTCCCAAAACGCCTGTTGTGTGTAAACCATCTGAATCTGCTATCGAGAAAGCTCTTGAAA 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 556 TTCCCAAAACGCCTGTTGTGTGTAAACCATCTGAATCTGCTATCGAGAAAGCTCTTGAAA 615
Query 709 TCGCCAATATTGATCCTAACCGAACGCTGTTCTTTGAGGACAGTGTCCGAAACGTACAAG 768
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 616 TCGCCAATATTGATCCTACCCGAACGCTGTTCTTTGAGGACAGTGTCCGAAACGTACAAG 675
Query 769 CTGGAAAACGCGTTGGTCTTTACACGGTTCTGGTTGGTAAATCGACCAAAGTCAAAGGAG 828
||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 676 CTGGAAAACGCGTAGGTCTTCACACGGTTCTGGTTGGTAAATCAACCAAAGTCAAAGGAG 735
Query 829 CGGATTACGCGTTGGAAAACATTCACAACATGAAAGAGGCGATACCGGAGTTATGGGAAT 888
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 736 CAGATTACGCGTTGGAAAACATTCACAACATGAAAGAGGCCATACCGGAGTTATGGGAAG 795
Query 889 CCGACAGGAAATCGTCGGATGTTGGATATTCCGGCAAGGTCGCCGTTGAGACTTCTGTTA 948
|||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 796 CCGACAGGAAGTCGCCGGATGTTGGATATTCCGGCAAGGTCGCCGTTGAGACATCTGTTA 855
Query 949 GAGCTTAGGAGGAGTACTGTTTCGC-CGTTG 978
||||||||||| ||||||||||| |||||
Sbjct 856 GAGCTTAGGAG---TACTGTTTCGCTCGTTG 883
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41096504526
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5