BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G02240.1
Length=1014
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939601 jgi|Araly1|939601|scaffold_600145.1 1282 0.0
Ahg349525 jgi|Araly1|349525|fgenesh1_pg.C_scaffold_6000118 202 4e-51
> Ahg939601 jgi|Araly1|939601|scaffold_600145.1
Length=802
Score = 1282 bits (694), Expect = 0.0
Identities = 759/791 (96%), Gaps = 2/791 (0%)
Strand=Plus/Plus
Query 69 AAGCTTCTACAATGGCGAATCTTCCCACCGTTCTCGTCACCGGCGCTAGTGGCA-GAACA 127
|||||||| |||||||||||||||||||||||||||| |||||||||||||| | |||||
Sbjct 10 AAGCTTCTTCAATGGCGAATCTTCCCACCGTTCTCGTTACCGGCGCTAGTGG-ACGAACA 68
Query 128 GGCCAGATTGTGTATAAGAAGCTGAAGGAGGGGTCAGACAAGTTTGTAGCAAAGGGTTTA 187
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 69 GGTCAGATTGTGTATAAGAAGCTGAAGGAGGGGTCAGACAAGTTTGTAGCAAAGGGTTTA 128
Query 188 GTTAGAAGTGCTCAAGGAAAAGAGAAAATTGGAGGAGAAGCTGATGTTTTCATTGGGGAT 247
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 129 GTTAGAAGTGCTCAAGGAAAAGAGAAAATTGGAGGAGAAGCTGATGTCTTCATTGGGGAT 188
Query 248 ATAACAGATGCTGATAGCATTAACCCTGCGTTTCAAGGAATCGATGCGCTTGTGATTCTC 307
||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||
Sbjct 189 ATAACAGATGCTGATAGCATTAATCCTGCGTTTGAAGGGATCGATGCGCTTGTGATTCTC 248
Query 308 ACTAGTGCTGTGCCTAAAATGAAACCTGGTTTTGATCCCACTAAAGGTGGAAGACCTGAG 367
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 249 ACGAGTGCTGTGCCTAAAATGAAACCTGGTTTTGATCCCACTAAAGGTGGAAGACCTGAG 308
Query 368 TTCATTTTCGAAGATGGACAGTATCCTGAACAAGTTGATTGGATTGGACAGAAGAATCAA 427
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 309 TTCATTTTCGAAGATGGACAGTATCCTGAACAAGTTGATTTTATTGGACAGAAGAATCAA 368
Query 428 ATTGATGCAGCCAAGGTTGCTGGTGTTAAGCATATTGTCGTGGTCGGGTCAATGGGTGGT 487
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 369 ATTGATGCAGCCAAGGTTGCTGGTGTTAAGCATATTGTCGTAGTCGGGTCAATGGGTGGT 428
Query 488 ACCAATCCGGATCATCCTTTGAACAAACTGGGAAATGGGAATATACTGGTTTGGAAGAGA 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 429 ACCAATCCGGATCATCCTTTGAACAAACTGGGAAATGGGAATATACTGGTTTGGAAGAGA 488
Query 548 AAGGCTGAACAGTACCTTGCTGATTCTGGAACTCCTTACACAATTATCAGAGCTGGAGGA 607
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 489 AAGGCTGAACAGTATCTTGCTGATTCTGGAACTCCTTACACAATAATCAGAGCTGGAGGA 548
Query 608 CTTCTAGATAAGGAAGGCGGTGTACGAGAGCTGCTAGTTGGTAAAGACGATGAGCTACTT 667
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 549 CTTCTAGATAAGGAAGGAGGTGTACGAGAGCTGATAGTTGGTAAAGACGATGAGCTACTT 608
Query 668 CAGACAGACACGAAAACCGTCCCCAGGGCTGATGTTGCAGAAGTCTGCATTCAGGCATTG 727
||||||||||| ||||||||||| |||||||||||||| ||||||||||| |||||||||
Sbjct 609 CAGACAGACACAAAAACCGTCCCGAGGGCTGATGTTGCGGAAGTCTGCATCCAGGCATTG 668
Query 728 CTGTTCGAGGAGGCCAAGAACAAAGCTTTCGATCTCGGCTCAAAGCCAGAGGGAACCAGT 787
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 669 CTGTTCGAGGAAGCCAAGAACAAAGCTTTCGATCTCGGCTCAAAGCCAGAGGGAACCAGT 728
Query 788 ACCCCAACCAAAGACTTCAAGGCTCTCTTCTCTCAAGTCACCTCTCGTTTTTAAATCATT 847
| || || |||||||| ||||||||||||||||||||||| ||||| || |||||| ||
Sbjct 729 TCTCCGACTAAAGACTTTAAGGCTCTCTTCTCTCAAGTCACTTCTCGATTCTAAATCTTT 788
Query 848 ATCTTTGTTGC 858
||||||| |||
Sbjct 789 ATCTTTGCTGC 799
> Ahg349525 jgi|Araly1|349525|fgenesh1_pg.C_scaffold_6000118
Length=600
Score = 202 bits (109), Expect = 4e-51
Identities = 121/127 (95%), Gaps = 0/127 (0%)
Strand=Plus/Plus
Query 596 AGAGCTGGAGGACTTCTAGATAAGGAAGGCGGTGTACGAGAGCTGCTAGTTGGTAAAGAC 655
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||
Sbjct 262 AGAGCTGGAGGACTTCTAGATAAGGAAGGAGGTGTACGAGAGCTGATAGTTGGTAAAAAC 321
Query 656 GATGAGCTACTTCAGACAGACACGAAAACCGTCCCCAGGGCTGATGTTGCAGAAGTCTGC 715
||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 322 GATGAGCTACTTCAGACAGACACAAAAACCGTCCCGAGGGCTGATGTTGCGGAAGTCTGC 381
Query 716 ATTCAGG 722
|||||||
Sbjct 382 ATTCAGG 388
Score = 183 bits (99), Expect = 2e-45
Identities = 113/120 (94%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 722 GCATTGCTGTTCGAGGAGGCCAAGAACAAAGCTTTCGATCTCGGCTCAAAGCCAGAGGGA 781
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GCATTGCTGTTCGAGGAAGCCAAGAACAAAGCTTTCGATCTCGGCTCAAAGCCAGAGGGA 540
Query 782 ACCAGTACCCCAACCAAAGACTTCAAGGCTCTCTTCTCTCAAGTCACCTCTCGTTTTTAA 841
|||||| | || || |||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 541 ACCAGTTCTCCGACTAAAGACTTCAAGGCTCTCTTCTCTCAAGTCACGTCTCGTTTATAA 600
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37703564913
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5