BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G02250.1
Length=2911
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487003 jgi|Araly1|487003|fgenesh2_kg.6__137__AT5G02250.1 4658 0.0
> Ahg487003 jgi|Araly1|487003|fgenesh2_kg.6__137__AT5G02250.1
Length=2916
Score = 4658 bits (2522), Expect = 0.0
Identities = 2795/2925 (96%), Gaps = 25/2925 (1%)
Strand=Plus/Plus
Query 3 AGAATTTCTCGTTTTTATCACCCGCTTCATTTGCCTTTCTATCGCCACAAGAACACAGAG 62
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 AGAATTTCTCGTTTCTATCACCCGCTTCATTTGCCTTTCTATCGCCACAAGAACACACAG 60
Query 63 AGAGAACGATTAGCCCAGTTCCGATATCGTTCGG---TGGCTTCTTCATCTGAAGCTACG 119
||||| ||||| | ||| |||||||||||||||| | |||||||||||||||||||||
Sbjct 61 AGAGAGCGATTTG-CCACTTCCGATATCGTTCGGATTTTGCTTCTTCATCTGAAGCTACG 119
Query 120 ATGATGTCGGTGAGAGCAATCAATGGTTGCTCCATCATTCGCACCGCCACTTCCGCCGGC 179
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 ATGATTTCGGTTAGAGCAATCAATGGTTGCTCCATCATTCGCACCGCCACTTCCGCCGGC 179
Query 180 GGTCCTCCCGTCTCTCTATTCCGCCACCGTATTCAGCGCCTCAGAGCTTCTCATCTCCGT 239
|| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 180 GGCCCTCCCGTCTCTCTATTTCGCCACCGTATTCAGCGCCTTAGAGCTTCTCATCTCCGT 239
Query 240 GAATTCTCGAAATTACGTTTAAATTTTCCACTAATCCGCG-CGGATAGGCGGTTTCTCGG 298
||||||||||||||| ||||||||||||||||| |||| | || ||||||| ||||||||
Sbjct 240 GAATTCTCGAAATTAGGTTTAAATTTTCCACTACTCCG-GTCGAATAGGCGATTTCTCGG 298
Query 299 AAATAGTGATGCTCCGAGCTGTTCGACTTGCATACATAGTCTGGTCGAAAGTGTTTCCGA 358
||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 299 AAATAATGATGCTCCGAGCTGTTCGTCTTGCATTCATAGTCTGGTCGAAAGTGTTTCCGA 358
Query 359 AGAGCTCGAATCCATCAGCAGACGCAAGGGAAGCCGAATGAGAGTTCGCGCCAGTGTAAA 418
||||||||||||||||||||||||||||||||||||||| ||||||| || || || ||
Sbjct 359 AGAGCTCGAATCCATCAGCAGACGCAAGGGAAGCCGAATCCGAGTTCGTGCTAGCGTGAA 418
Query 419 GGTGAAATTAACAAGCTACGGAGAGGTTCTAGAGGATAAGCTAGTAAACCAGGAGCTAGA 478
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||
Sbjct 419 GGTGAAATTAACAAGCTACGGAGAGGTTCTGGAGGATAAGCTAGTAAACCAGGAACTGGA 478
Query 479 GGCTGGTTTGCTTCTGGAGTTTAAGAAGGACGCAGACAGAGTGTTGTTGGCAGTTCTTCA 538
||| |||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||
Sbjct 479 GGCGGGTTTGCTTCTGGAGTTTAAGAAGGACGCAGAGAGAGTATTGTTGGCAGTTGTTCA 538
Query 539 TAGACGTGATGGCAAGAAGAATTGGATGGTGTTTGATCAGAATGGTGTTAGTTGTTCCAT 598
||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||
Sbjct 539 TAGACGTGATGGCAAGAAGAACTGGATGGTCTTTGATCAGAATGGTGTTACTTGTTCCAT 598
Query 599 CAAACCACAGCAAATTACATACATCGTCCCGA-ATGTTTATAATTTTGATCATACAGGAC 657
|||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||
Sbjct 599 CAAACCACAGCAAATTACGTACATCGTCCC-AGGTGTTTATAATTTTGATCATACAGGAC 657
Query 658 TTACTGATTTTCTCCAAAGGGCTCAAGATAACTTGGATCCCCAACTGCTTGAGTTTGCTT 717
|||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||
Sbjct 658 TTACTGATTTTCTCCAGAGGGCACAGGATAACTTGGATCCCCAACTGCTTGAGTTTGCTT 717
Query 718 GGATGGAGTTACTTGAGAAGAACAAACCTGTGACCCCAGAAGAGTTAGCAGAGATGATAT 777
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 718 GGATCGAGTTACTTGAGAAGAACAAACCTGTGACGCCAGAAGAGTTAGCAGAGATGATAT 777
Query 778 ATGGTCGCGCAGATCCTCTTGAAAGCTATTGTGCTCATTTTTTGCTATCACAAGACGAGA 837
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 ATGGTCGAGCAGATCCTCTTGAAAGCTATTGTGCTCATTTTTTGCTATCACAAGACGAGA 837
Query 838 TATACTTTTCTATCTTGGAGTCAAAAGGTTCTCGATCAATATATAGCCCTCGGCCTACTG 897
||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 838 TATACTTTTCTGTCTTGGAGTCAAAAGGTTCTCGATCAATATATAGCCCCCGGACTACTG 897
Query 898 AACAGGTGGAAGAGCTTTTACGAAGGCAACGCGTGAAGGAGGCAGAAGATAAAGAGTTTC 957
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 898 AACAGGTGGAAGAGCTTTTACGAAGGCAACGCGTGAAGGAGGCAGAAGAGAAAGAGTTTC 957
Query 958 AGGAGTTTATTCAATTGCTGAAGTCTGCCAAGAAGGCACCTAGTCACGCCAAGCCCCCTA 1017
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 958 AGGAGTTTATTCAATTGCTGAAGTCTGCCAAGAAGGCGCCTAGTCACGCCAAGCCCCCCA 1017
Query 1018 AATCTTCATGGCTAGCTGATGATAAAGTCCAAGATAGGATTGGCTCACTTGAAGCTTATG 1077
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1018 AATCTTCATGGCTAGCTGATGATAAAGTCCAAGATAGAATTGGCTCACTTGAAGCTTATG 1077
Query 1078 CCATTGATGCATGGGCAAGCACTGACCAGCAGAAATTGGCTGGAACGATATTAAAATCCA 1137
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1078 CCATTGATGCATGGGCAAGCACTGACCAGCAGAAATTGGCTGGAACGATCTTAAAATCCA 1137
Query 1138 TGGGGTTACAGAAAACGTCTGTATCAGCACTAAACCTTCTCATAGATATTGGATATTTTC 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 TGGGGTTACAGAAAACGTCTGTATCAGCACTAAACCTTCTCATAGATATTGGATATTTTC 1197
Query 1198 CTGTACATGTCAATCTTGAACTGCTTAAGCTGAATCTTCCAACCCACCACTCAGAAGCTA 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 CTGTACATGTCAATCTTGAACTGCTTAAGCTGAATCTTCCAACCCACCACTCAGAAGCTA 1257
Query 1258 TCACTGAAGCTGCTGAAGCTCTTCTTTCAGAATCGTCTGATATTGATGCGGTTAGGAGGA 1317
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 1258 TCACTGAAGCTGCTGAAGTTCTTCTTTCAGAATCATCTGATATTGATGCGGTTAGGAGGA 1317
Query 1318 TTGATCTCACACACTTGAAGGTTTATGCAATTGATGTTGATGAGGCTGATGAGCTTGATG 1377
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 TTGATCTAACACACTTGAAGGTTTATGCAATTGATGTTGATGAGGCTGATGAGCTTGATG 1377
Query 1378 ATGCCCTCAGTGCAACGAGATTGCAGGATGGACGGATAAAGATCTGGATACATGTTGCTG 1437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 ATGCCCTCAGTGCAACGAGATTGCAGGATGGACGGATAAAGATCTGGATACATGTTGCTG 1437
Query 1438 ATCCTGCTAGATATGTTACACCTGGGAGTAAAGTGGACAGAGAGGCAAGGAGAAGGGGAA 1497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 ATCCTGCTAGATATGTTACACCTGGGAGTAAAGTGGACAGAGAGGCAAGGAGAAGGGGAA 1497
Query 1498 CTTCTGTCTTTCTGCCAACGGCTACTTATCCAATGTTTCCAGAGAAACTTGCCATGGAAG 1557
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1498 CTTCTGTCTTTCTGCCTACGGCTACTTATCCAATGTTTCCAGAAAAACTTGCCATGGAAG 1557
Query 1558 GAATGAGCTTAAGACAAGGAGAAAACTGTAATGCTGTCTCTGTGTCTGTTGTCCTGCGTT 1617
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1558 GAATGAGTTTAAGACAAGGAGAAAACTGCAATGCTGTCTCTGTGTCTGTTGTCCTGCGTT 1617
Query 1618 CTGATGGCTGTATTACAGAATATTCAGTAGATAATTCAATCATCAGACCGACCTATATGT 1677
|||||||||||||| |||| ||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1618 CTGATGGCTGTATTGCAGACTATTCAGTAGAGAATTCAATCATCAGACCAACCTATATGT 1677
Query 1678 TGACGTATGAAAGTGCTTCTGAGCTGCTTCACTTGAACCTAGAAGAAGAAGCTGAACTGA 1737
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1678 TGACATATGAAAGTGCTTCTGAGCTGCTTCACTTGAACCTAGAAGAAGAAGCTGAACTGA 1737
Query 1738 AATTGCTGTCTGAGGCAGCATTCATTCGCTCTCAGTGGCGCCGTGAACAGGGTGCAGTGG 1797
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1738 AATTGCTGTCTGAGGCAGCTTTCATTCGCTCTCAATGGCGCCGTGAACAGGGTGCAGTGG 1797
Query 1798 ACACAACTACACTAGAAACTCGTATCAAAGTGGTGAATCCTGAGGATCCAGAACCTTTGA 1857
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1798 ACACAACTACACTAGAAACTCGTATCAAAGTGGTGAATCCTGAGGATCCAGAGCCTTTGA 1857
Query 1858 TAAATCTCTATGTAGAAAATCAGGCAGATCTAGCGATGAGACTTGTCTTTGAAATGATGA 1917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1858 TAAATCTCTATGTAGAAAATCAGGCAGATCTAGCGATGAGACTTGTCTTTGAAATGATGA 1917
Query 1918 TTCTTTGTGGGGAGGTTGTAGCAACGTTTGGGTCTCAGCATAATATTCCATTGCCATATA 1977
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1918 TTCTTTGTGGGGAGGTTGTAGCAACGTTTGGGTCTCAGCATAATATTCCATTGCCATATA 1977
Query 1978 GAGGACAGCCACAGTCAAATATTGATGTATCTGCATTTGCGCATCTTCCAGAAGGACCAG 2037
|||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1978 GAGGACAGCCTCAGTCAAATATTGATGTATCTGCATTTGCACATCTTCCAGAAGGACCCG 2037
Query 2038 TACGTTCCTCATCCATTGTCAAAGTAATGCGTGCTGCAGAAATGAATTTCAGATGTCCTG 2097
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2038 TACGTTCGTCATCCATTGTCAAAGTAATGCGTGCTGCAGAAATGAATTTCAGATGTCCTG 2097
Query 2098 TTCGACATGGAGTGCTTGGAATTCCTGGTTACGTTCAGTTCACGTCTCCCATTCGTCGAT 2157
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 2098 TTCGACATGGAGTGCTTGGAATTCCTGGTTACGTTCAGTTCACATCTCCCATTCGTCGTT 2157
Query 2158 ACATGGATCTTACTGCACACTATCAGATTAAAGCTTTTCTTCGAGGAGGTGACAATTTTC 2217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2158 ACATGGATCTTACTGCACACTATCAGATTAAAGCTTTTCTTCGAGGAGGTGACAATTTTC 2217
Query 2218 CATTCTCTGCTGGTGAGTTAGAAGGTATAGCAGCATCCGTAAACATGCAGAGCAAAGTGG 2277
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 2218 CATTCTCGGCTGGTGAGTTAGAAGGTATAGCAGCATCCGTAAACATGCAAAGCAAGGTGG 2277
Query 2278 TGAGAAAACTCTCAAACACCGGTCTCCGCTATTGGGTAATAGAGTTTCTCAGAAGACAGG 2337
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2278 TGAGAAAGCTCTCAAACACCGGTCTCCGCTATTGGGTAATAGAGTTTCTCAGAAGACAAG 2337
Query 2338 AAAAGGGTAAAAAGTACACCGCATTGGTCTTGAGATTTGTCAAAGACCGGATCGCATCCC 2397
||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 2338 AAAAGGGTAAAAAATACACCGCATTGATCTTGAGATTTGTCAAAGACCGGATCGCATCGC 2397
Query 2398 TTTTGTTGGTTGAGGTGGGTTTTCAAGCAACGGCGTGGGTGTCAGAAGGAAAACAAGTGG 2457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2398 TTTTGTTGGTTGAGGTGGGTTTTCAAGCAACGGCGTGGGTGTCAGAAGGAAAACAAGTGG 2457
Query 2458 GAGATGAAATCGAAGTTCGAGTAGAAGAAGCTCATCCCCGCGACGATCTTATTCTCTTCA 2517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2458 GAGATGAAATCGAAGTTCGAGTAGAAGAAGCTCATCCCCGCGACGATCTTATTCTCTTCA 2517
Query 2518 AAGAGGTTATCTAGAGCTTTAAAAACACACAGTTCAGGAAAATTCATTAAAGTCGGTTTC 2577
|||||||||||||||| ||||||||||| ||||||||||||||||| ||| |||||||
Sbjct 2518 AAGAGGTTATCTAGAGAATTAAAAACACATAGTTCAGGAAAATTCATCAAAACCGGTTTC 2577
Query 2578 TCTAAACATGGAGATGCCTGAAACTGATAGAAAGCTTGTGTTTACAAAAGAGAAACTTGC 2637
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2578 TCTAAACATGGAGATGCCTGGAACTGATAGAAAGCTTGTGTTTACAAAAGAGAAACTTGC 2637
Query 2638 TGATGGACGCAGCCATTGGTGGCTTGAGCTATGATCTGCTATAAA-AGTTGA--ACA--C 2692
||||||||||||||||| ||| ||||||||||| ||||| |||| |||||| ||| |
Sbjct 2638 TGATGGACGCAGCCATTTTTGGGTTGAGCTATGACCTGCT-TAAAGAGTTGAGCACATGC 2696
Query 2693 ATGGTAATATGGTACGCACTTAATAGGGTTCATACAATTTTACATCATCTTGTTATTCTA 2752
|||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||| ||
Sbjct 2697 ATGGTAATATGGTACGTACTTA-TAGGGTTCATACAATTTTACATCATGTTGTTATTGTA 2755
Query 2753 AGT-ATT-TATGGAAACTTGCGTTT-GTTCTGTAGAGCA-AAGGATGAAAAAGGAATGTA 2808
||| | | || |||||||||| ||| ||||| ||||| | ||||| |||||||||||||
Sbjct 2756 AGTTAGTATA-GGAAACTTGCTTTTTGTTCTCTAGAG-ATAAGGAAGAAAAAGGAATGTG 2813
Query 2809 TATATATACTATTTCAATGTTGAATTTTATTGATCT-AAAGTC-TTGAACAGAGCTCGAA 2866
| |||||||||||||||||||||||| || ||||| |||||| || |||||||||| ||
Sbjct 2814 -A-ATATACTATTTCAATGTTGAATTTGATCGATCTTAAAGTCCTTAAACAGAGCTCCAA 2871
Query 2867 GGCCTTAGAAAAATATCAACTTGATATAATTAAGCTCTTAAGATT 2911
|||||||||||||||||||||||||| ||||||| || |||||||
Sbjct 2872 GGCCTTAGAAAAATATCAACTTGATACAATTAAGATCGTAAGATT 2916
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109890356825
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5