BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G02260.1
Length=1249
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939605 jgi|Araly1|939605|scaffold_600149.1 1266 0.0
> Ahg939605 jgi|Araly1|939605|scaffold_600149.1
Length=820
Score = 1266 bits (685), Expect = 0.0
Identities = 777/822 (95%), Gaps = 4/822 (0%)
Strand=Plus/Plus
Query 44 TTTTTCCGTAC-CAAGGTC-AACAAATGGCGGCGAAAGTAATTACATTTATGGCGGTTAT 101
||||||||||| || | | ||||||||||||||| |||||| ||||| |||||||||||
Sbjct 1 TTTTTCCGTACTTAA-G-CAAACAAATGGCGGCGAGAGTAATAACATTAATGGCGGTTAT 58
Query 102 GGTGGTTACTGCCTTTACGGCCAACGCCAAAATCCCCGGAGTTTACACCGGTGGTCCTTG 161
||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 59 GGTGGTTACTGCCTTGACGGTGAACGCCAAAATCCCCGGAGTTTACACCGGTGGTCCCTG 118
Query 162 GATCAATGCTCACGCCACCTTCTACGGTGAAGCTGACGCTTCCGGCACTATGGGTGGTGC 221
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 119 GATCAATGCTCACGCCACCTTCTACGGCGAGGCTGACGCTTCCGGCACTATGGGTGGTGC 178
Query 222 GTGTGGGTACGGGAATTTGTATAGCCAAGGTTACGGAGTGAACACGGCGGCTTTAAGCAC 281
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 179 GTGTGGGTACGGGAATTTGTATAGCCAAGGTTACGGTGTGAACACAGCGGCTTTAAGCAC 238
Query 282 TGCCTTATTCAACAATGGTTTGAGTTGTGGCTCTTGCTTTGAGCTTAAGTGTATCAATGA 341
||||||||||||||||||||| |||||||||||||||| |||||| |||||| |||||||
Sbjct 239 TGCCTTATTCAACAATGGTTTAAGTTGTGGCTCTTGCTATGAGCTCAAGTGTGTCAATGA 298
Query 342 TCCAGGATGGTGTCTTCCTGGAAACCCATCAATTCTTATCACCGCCACTAATTTCTGCCC 401
||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 299 TCCTGGATGGTGTCTTCCCGGAAACCCATCAATCCTTATCACCGCCACTAATTTCTGCCC 358
Query 402 TCCTAACTTTAATCAAGCTAGCGACAATGGTGGTTGGTGTAATCCTCCTCGTGAGCACTT 461
||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 359 TCCCAACTTTAATCAAGCTAGCGATGATGGTGGTTGGTGTAACCCTCCTCGTGAGCACTT 418
Query 462 TGATCTCGCTATGCCTATGTTTCTTTCCATCGCTAAGTATAAGGCTGGTATCGTCCCCGT 521
||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 419 TGATCTCGCCATGCCTATGTTTCTATCCATCGCTAAGTATAAGGCCGGTATCGTCCCCGT 478
Query 522 CTCTTACCGCAGGATCCCATGTAGGAAGAAGGGAGGAATCAGATTCACAATCAATGGATT 581
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 479 CTCTTACCGCAGGATCCCATGTAGGAAGAAGGGAGGTATAAGATTCACAATCAATGGATT 538
Query 582 CAAGTACTTCAACTTGGTGCTGGTCACTAACGTAGCCGGAGCTGGAGACGTCATTAAGGT 641
|| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 539 CAGGTACTTCAACTTGGTGCTGGTCACTAACGTAGCCGGAGCTGGCGACGTCATTAAGGT 598
Query 642 GAGTGTGAAAGGATCCAACACACAATGGTTAGATCTGAGCCGGAACTGGGGACAAAACTG 701
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GAGTGTGAAAGGAACCAACACACAATGGTTAGATCTGAGCCGGAACTGGGGACAAAACTG 658
Query 702 GCAATCCAACGCACTTCTTGTCGGCCAATCTCTTTCTTTCCGAGTCAAAACCTCTGATGG 761
||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 659 GCAATCCAACGCAGTTCTTATCGGCCAATCTCTTTCTTTCCGAGTCAAAACCTCCGATGG 718
Query 762 CCGAAGCTCCACCTCCAACAACATTGCTCCCAGTAACTGGCAATTTGGCCAGACCTACTC 821
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 719 CCGAAGCTCCACCTCCAACAACATTGCTCCCAGTAACTGGCAATTTGGTCAGACTTACTC 778
Query 822 CGGCAAGAACTTCCGCGTCTGATTTCTAGAATATGAAAAAGA 863
||||||||| |||||||| ||||| |||||| | ||||||||
Sbjct 779 CGGCAAGAATTTCCGCGTTTGATTCCTAGAAAACGAAAAAGA 820
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46662450408
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5