BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G02270.2
Length=1223
Score E
Sequences producing significant alignments: (Bits) Value
Ahg349529 jgi|Araly1|349529|fgenesh1_pg.C_scaffold_6000122 876 0.0
> Ahg349529 jgi|Araly1|349529|fgenesh1_pg.C_scaffold_6000122
Length=987
Score = 876 bits (474), Expect = 0.0
Identities = 529/556 (95%), Gaps = 2/556 (0%)
Strand=Plus/Plus
Query 580 GTGTTGGATATCGACATCTCATGGAGACTGCACAAGGTATCCGATGGCCAAAGAAGACGT 639
|||||||||||||| |||||||||||| ||||||||||||| |||||||| |||||||||
Sbjct 433 GTGTTGGATATCGATATCTCATGGAGATTGCACAAGGTATCGGATGGCCAGAGAAGACGT 492
Query 640 GTACAGATCTGTATGGGACTCCTGAAGCCATTCAAGGTTCTCCTTTTGGATGAAATAACT 699
|| ||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 493 GTTCAGATTTGTATGGGACTCCTCAAGCCATTTAAGGTTCTCCTTTTGGATGAAATAACT 552
Query 700 GTTGATCTTGACGTTCTCGCTAGAGCAGACCTTTTGAAGTTTCTGAGAAAGGAATGTGAA 759
|||||||||||||||||||| |||||||||||| |||| ||||||||||||||||| |||
Sbjct 553 GTTGATCTTGACGTTCTCGCAAGAGCAGACCTTCTGAAATTTCTGAGAAAGGAATGCGAA 612
Query 760 GAACGAGGAGCAACCATAATCTACGCTACTCATATATTCGATGGCT-TAGAGGACTGGCC 818
|||||||||||||||||||| ||||||||||||||||| ||||| | ||||||| |||||
Sbjct 613 GAACGAGGAGCAACCATAATATACGCTACTCATATATTTGATGG-TCTAGAGGATTGGCC 671
Query 819 AACACACATTGTGTATGTAGCAAACGGAAAATTGCAGTTAGCATTGCCAATGGAGAAAGT 878
|||||||||||||||||| |||||||| ||| |||| |||||||||||||||||||||||
Sbjct 672 AACACACATTGTGTATGTTGCAAACGGGAAACTGCAATTAGCATTGCCAATGGAGAAAGT 731
Query 879 GAAGGAGACAAGCAAGAAGTCATTGAtgagaacagttgagagttggctgaggaaagaaag 938
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 732 GAAGGAGACAAGCAAGAAGTCATTGATGAGAACAGTTGAGAGTTGGCTGAGGAAAGAAAG 791
Query 939 agatgaagagagaaagagaaggaaagagaggaaagCTAATGGGCTTCCAGAGTTTGAAAC 998
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 792 AGATGAAGAGAGAAAGAGAAGGAAAGAGAGGAAAGCAAATGGGCTTCCGGAGTTTGAAAC 851
Query 999 ACGGACTGAAGAAAGCCGTGTGACTGGTGATCCAGCACGGATGCTGAACAATGGCTGGGC 1058
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 852 ACGGACTGAAGAAAGCCGTGTGACCGGTGATCCAGCACGGATGCTGAACAATGGCTGGGC 911
Query 1059 TGCCGGGAGACTTCACTCTACGGTTGCAGGTGGTGAGGATAATTTCGTCTTAAGCTCAAA 1118
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 912 CGCCGGGAGACTCCACTCTACGGTTGCAGGCGGTGAGGATAATTTCGTCTTAAGCTCAAA 971
Query 1119 CAGAGTTCTAAGATAA 1134
||||||||||||||||
Sbjct 972 CAGAGTTCTAAGATAA 987
Score = 776 bits (420), Expect = 0.0
Identities = 428/432 (99%), Gaps = 0/432 (0%)
Strand=Plus/Plus
Query 70 ATGGCGGTGACGGAGGAGGAGAAGAAGCGGAATTCAACGGTTGAGATCTCCGGATTACGT 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGGTGACGGAGGAGGAGAAGAAGCGGAATTCAACGGTTGAGATCTCCGGATTACGT 60
Query 130 TTCACGTATCCTGGAATCGACGGTCATCCACCACCGGGATCGAAACCACTTATTGAAGAT 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTCACGTATCCTGGAATCGACGGTCATCCACCACCGGGATCGAAACCACTTATTGAAGAT 120
Query 190 TTCTCAATCACGCTTAATTCCAGCGATCGGTGTCTCCTCGTCGGATCTAATGGCGCTGGG 249
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTCTCAATCACGCTTAATTCGAGCGATCGGTGTCTCCTCGTCGGATCTAATGGCGCTGGG 180
Query 250 AAAACGACGATTCTGAAGATATTGGGAGGGAAACACATGGTGGAGCCGCATATGGTTAGG 309
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 181 AAAACGACGATTCTGAAGATACTGGGAGGGAAACACATGGTGGAGCCGCATATGGTTAGG 240
Query 310 GTTCTGGGTCGCTCGGCGTTTCATGATACTGGATTGACCTCTTCTGGTGATCTCTGTTAT 369
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 241 GTTCTGGGTCGCTCGGCGTTTCATGATACTGGATTGACATCTTCTGGTGATCTCTGTTAT 300
Query 370 CTCGGTGGCGAGTGGAGGCGTGATGTTGCATTTGCAGGATTTGAAGTTCCGATACAAATG 429
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 301 CTCGGTGGCGAGTGGAGGCGTGATGTTGCATTTGCAGGATTTGAGGTTCCGATACAAATG 360
Query 430 GACATTTCGGCGGAGAAGATGATATTTGGAGTGGCTGGTATTGATCCTCAGAGAAGAGAT 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GACATTTCGGCGGAGAAGATGATATTTGGAGTGGCTGGTATTGATCCTCAGAGAAGAGAT 420
Query 490 GAGTTGATCAAG 501
||||||||||||
Sbjct 421 GAGTTGATCAAG 432
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45671254566
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5