BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G02280.1

Length=661
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg939607 jgi|Araly1|939607|scaffold_600151.1                        776    0.0  
  Ahg487008 jgi|Araly1|487008|fgenesh2_kg.6__142__AT5G02290.2          158    6e-38


> Ahg939607 jgi|Araly1|939607|scaffold_600151.1
Length=467

 Score =  776 bits (420),  Expect = 0.0
 Identities = 454/470 (97%), Gaps = 3/470 (1%)
 Strand=Plus/Plus

Query  57   TTGAAGATTATCGGGGGaaaaaaaTGGCAGCGATTTACAGTCTTTACATAATTAACAAAT  116
            ||||||||||||   |||||| |||||| ||||||||||||||||||||||| |||||||
Sbjct  1    TTGAAGATTATC---GGAAAACAATGGCGGCGATTTACAGTCTTTACATAATAAACAAAT  57

Query  117  CTGGTGGTTTGATATTCTACAAGGATTGTGGAACAAAGGGAAGAATGGATACGAATGATA  176
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  58   CTGGTGGTTTGATATTCTACAAGGATTGTGGAACAAAGGGAAGAATGGATACAAATGATA  117

Query  177  GCTTGAGAGTAGCTAGTTTATGGCATTCAATGCACGCCATTTCTCAGCAGCTTTCACCTG  236
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  118  GCTTGAGAGTAGCTAGTTTATGGCATTCAATGCACGCCATTTCTCAGCAGCTTTCACCTG  177

Query  237  TCAATGGCTGTTCTGGCATCGAGCTTCTCGAAGCCGACACTTTCGATCTCCATTGTTTCC  296
            |||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||
Sbjct  178  TCAATGGCTGTTCTGGAATTGAGCTTCTCGAAGCCGACACTTTTGATCTCCATTGTTTCC  237

Query  297  AGTCTCTCCCAGGAACAAAGTTCTTTGTGGTTTGTGAACCTGGGACTCCTCACATGGAGA  356
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  238  AATCTCTCCCAGGAACAAAGTTCTTTGTGGTTTGTGAACCTGGGACTCCTCACATGGAGA  297

Query  357  GCCTCCTTAGATACATTTATGAACTCTACACTGATTACGTCTTGAAGAATCCTTTCTATG  416
            ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct  298  GCCTCCTTAGATACATTTATGAACTCTACACTGATTATGTCTTGAAGAATCCTTTCTACG  357

Query  417  AGATTGAAATGCCTATCCGTTGCGAGCTTTTCGACATCAACCTTACTCAAGCTGTACAGT  476
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  358  AGATTGAAATGCCTATCCGTTGCGAGCTTTTCGACATCAACCTTACTCAAGCTGTACAGT  417

Query  477  CAGATCGTGTTGCTTTGTTAGGACGATGAACTAGAGATTGATTCTCTGCT  526
            ||||||||||||| ||||||||||||||| | ||||||||||||||||||
Sbjct  418  CAGATCGTGTTGCATTGTTAGGACGATGAGCAAGAGATTGATTCTCTGCT  467


> Ahg487008 jgi|Araly1|487008|fgenesh2_kg.6__142__AT5G02290.2
Length=1595

 Score =  158 bits (85),  Expect = 6e-38
 Identities = 98/104 (94%), Gaps = 1/104 (1%)
 Strand=Plus/Minus

Query  559   GTGGTTTTCTTATCCTGATAACATT-TTGTATGTGAGATAACATGTGAACGTTGTAAGAG  617
             ||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||| |
Sbjct  1595  GTGGTTTTCTTATCCTGTTAACATTATTTTATGTGAGATAACATGTGAACGTTGTAAGGG  1536

Query  618   AACCTAAGTTTACAACTAGTAAGTTTCCTTCTCTCCCTTACATT  661
              ||||||||||||||||| |||||||||||||||||||||||||
Sbjct  1535  GACCTAAGTTTACAACTATTAAGTTTCCTTCTCTCCCTTACATT  1492



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24246175212


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5