BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G02290.1
Length=1605
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487008 jgi|Araly1|487008|fgenesh2_kg.6__142__AT5G02290.2 2228 0.0
> Ahg487008 jgi|Araly1|487008|fgenesh2_kg.6__142__AT5G02290.2
Length=1595
Score = 2228 bits (1206), Expect = 0.0
Identities = 1340/1404 (95%), Gaps = 12/1404 (1%)
Strand=Plus/Plus
Query 212 GTG-GTTTCTTGGAG-TTTTAATGGGAGGTTGTTTCAGCAATCGGATTAAAACAGATATT 269
||| ||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 193 GTGAGTTTCTT-GAGTTTTTAATGGGAGGTTGTTTCAGCAATCGGATCAAAACAGATATT 251
Query 270 GCTTCCAGTACATGGCTAAGTTCGAAATTCTTGAGTAGAGATGGGAGCAAGGGCTCGTCG 329
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 252 GCTTCCAGTACATGGCTAAGTTCGAAATTCTTGAGTAGAGATGGGAGCAAGGGATCGTCG 311
Query 330 ACCGCTTCCTTCTCTTATATGCCTCGAACAGAAGGCGAGATCTTGCAAAATGCTAATCTC 389
||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 312 ACCACCTCCTTCTCTTATATGCCTCGAACAGAAGGCGAGATCTTGCAAAATGCTAATCTG 371
Query 390 AAGAACTTTAGTCTCAGTGAACTGAAATCTGCAACTAGGAATTTCCGGCCTGATAGTGTG 449
|||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 372 AAGAACTTTAGTCTCACTGAGCTGAAATCTGCAACCAGGAATTTCCGGCCTGATAGTGTG 431
Query 450 GTTGGTGAAGGTGGATTTGGTTGCGTTTTCAAAGGCTGGATCGATGAGTCCTCTCTCGCT 509
||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||| ||
Sbjct 432 GTTGGTGAAGGTGGATTTGGTTGTGTTTTCAAAGGCTGGATCGATGAGGCCTCACTCACT 491
Query 510 CCTTCTAAACCGGGGACCGGGATTGTCATTGCTGTGAAAAGACTTAACCAAGAAGGGTTT 569
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 492 CCTTCTAAACCGGGGACCGGGATTGTCATTGCAGTTAAAAGACTTAACCAAGAAGGGTTT 551
Query 570 CAAGGTCATCGAGAGTGGCTGGCTGAGATCAATTATTTAGGCCAGCTGGATCATCCTAAC 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 552 CAAGGTCATCGAGAGTGGCTGGCTGAGATCAATTATTTAGGCCAGCTGGATCATCCTAAC 611
Query 630 CTTGTGAAACTGATTGGATACTGCTTGGAAGAGGAGCACAGGCTTCTTGTTTACGAGTTT 689
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 612 CTTGTGAAACTGCTTGGATACTGCTTGGAAGAGGAGCACAGGCTTCTTGTTTACGAGTTT 671
Query 690 ATGACTCGTGGTAGTCTTGAGAATCACTTATTCAGAAGAGGAACATTCTATCAGCCACTT 749
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 672 ATGCCCCGTGGTAGTCTTGAGAATCACTTATTCAGAAGAGGAACATTCTATCAGCCACTT 731
Query 750 TCATGGAACACGCGGGTTCGTATGGCTCTTGGTGCAGCTAGAGGACTTGCTTTTCTTCAC 809
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 732 TCATGGAACACGCGGGTTCGAATGGCTCTTGGTGCAGCTAGAGGACTTGCTTTTCTTCAC 791
Query 810 AATGCTCAACCGCAAGTTATATACCGAGACTTCAAAGCATCTAACATCTTGCTAGATTCG 869
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 792 AATGCTCAACCGCAAGTTATATACCGAGACTTCAAAGCATCCAACATCTTGCTAGATTCG 851
Query 870 AACTACAACGCAAAGCTTTCGGATTTCGGTTTGGCTAGAGATGGTCCAATGGGTGACAAC 929
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 852 AACTACAATGCAAAGCTTTCGGATTTCGGTTTGGCTAGAGATGGTCCAATGGGTGACAAT 911
Query 930 AGCCATGTTTCTACCAGAGTCATGGGAACTCAGGGATACGCTGCTCCAGAATATCTAGCT 989
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 912 AGCCATGTTTCTACCAGAATCATGGGAACTCAGGGATACGCTGCTCCAGAATATCTAGCT 971
Query 990 ACAGGTCATTTATCGGTGAAGAGCGATGTATACAGTTTTGGGGTTGTGTTACTGGAGTTG 1049
|||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||
Sbjct 972 ACAGGTCATTTATCGGCGAAGAGCGATGTGTACAGTTTCGGGGTTGTGTTACTGGAGTTG 1031
Query 1050 TTATCAGGAAGACGAGCAATTGACAAGAATCAACCAGTAGGAGAACACAATCTCGTGGAT 1109
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1032 TTATCAGGAAGACGAGCAATTGACAAGAATCAACCAGTAGGAGAACACAATCTAGTGGAT 1091
Query 1110 TGGGCAAGACCCTACTTAACAAACAAGAGAAGACTTCTGCGAGTGATGGATCCTCGTCTC 1169
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1092 TGGGCAAGACCTTACTTAACAAACAAGAGAAGACTTCTGCGGGTGATGGATCCTCGCCTC 1151
Query 1170 CAAGGTCAATACTCACTAACCCGAGCTTTGAAAATTGCAGTTCTTGCACTCGATTGCATA 1229
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1152 CAAGGTCAATACTCGCTAACCCGAGCTTTGAAAATTGCAGTTCTTGCACTCGATTGCATA 1211
Query 1230 TCTATAGATGCCAAGAGTAGACCGACCATGAACGAAATCGTCAAGACAATGGAAGAACTT 1289
|| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1212 TCCATAGATACCAAGAGTAGACCGACCATGAACGAAATCGTCAAGACACTGGAAGAACTT 1271
Query 1290 CATATCCAGAAGGAAGCATCAAAAGAGCAGCAGAATCCTCAAATCAGCATTGACAACATC 1349
|||||||||||||||| | | ||||||||||||||||| |||||||||||||||| || |
Sbjct 1272 CATATCCAGAAGGAAGTACCGAAAGAGCAGCAGAATCCACAAATCAGCATTGACATCAAC 1331
Query 1350 ATCAACAAATCTCCACAAGCTGTGAATTATCCTAGGCCTTCAATTATGTAACAAT----- 1404
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1332 ATCAACAAATCTCCACAAGCTGTGAATTATCCTAGGCCTTCAATTATGTAACAATAAAAT 1391
Query 1405 ---CCTAGGCGAGCTATTTACCGGGTTTTAGAGATGTATAGACTCTTTACCTTCTGTCTG 1461
||||||| | || ||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1392 TATCCTAGGCAATCTTTTTACCGGGTTCTAGAGATGTATAGACTCTTTACCATCTGTCTG 1451
Query 1462 TTTAGATATTATGTTGTTTGGTAGTAACAAAAGAGCTGGCAATGTAAGGGAGAGAAGGAA 1521
||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1452 TTTAGGTATTATGCTGTTTGGTAGTAACAAAAGAACTGGCAATGTAAGGGAGAGAAGGAA 1511
Query 1522 ACTTACTAGTTGTAAACTTAGGTTCTCTTACAACGTTCACATGTTATCTCACATACAA-A 1580
||||| ||||||||||||||||| | ||||||||||||||||||||||||||||| || |
Sbjct 1512 ACTTAATAGTTGTAAACTTAGGTCCCCTTACAACGTTCACATGTTATCTCACATAAAATA 1571
Query 1581 ATGTTATCAGGATAAGAAAACCAC 1604
|||||| |||||||||||||||||
Sbjct 1572 ATGTTAACAGGATAAGAAAACCAC 1595
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60144496855
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5