BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G02320.1
Length=2056
Score E
Sequences producing significant alignments: (Bits) Value
Ahg324904 jgi|Araly1|324904|fgenesh1_pm.C_scaffold_6000124 2409 0.0
Ahg341076 jgi|Araly1|341076|fgenesh1_pg.C_scaffold_3000839 621 6e-177
> Ahg324904 jgi|Araly1|324904|fgenesh1_pm.C_scaffold_6000124
Length=1626
Score = 2409 bits (1304), Expect = 0.0
Identities = 1495/1583 (94%), Gaps = 30/1583 (2%)
Strand=Plus/Plus
Query 88 ATGAGCTCAAGTTCGAATCCACCGGTTTGTTCACCGGAAAAGGAGGAAAGAAGTGAAATG 147
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||
Sbjct 1 ATGAGCTCAAGTTCGAATCCAGCGGCTTGTTCACCGGAAAAGGAGGAAAGAAGTGAATTG 60
Query 148 AAAATTGAGATTCAATGTATGGAGAATAAGCAACCATTAGCTGCTTCTTGCTCTTCTGCA 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAAATTGAGATTCAATGTATGGAGAATAAGCAACCATTAGCTGCTTCTTGCTCTTCTGCA 120
Query 208 TCCGAAGGTAGTGGCTGTTTCTTCCTCAAGTCACCTGAAATCGCAACTCCTGCCACAGTA 267
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 121 TCCGAAGGCAGTGGCTGTTTCTTCCTCAAGTCACCTGAAATCGCAACTCCTGCCACTGTA 180
Query 268 TCTTCATTTCCTCGGAGGACTAGTGGACCTATGAGACGAGCAAAAGGTGGTTGGACTCCA 327
|||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 TCTTCAACTCCTCGGAGGACTAGTGGCCCTATGAGACGAGCAAAAGGTGGTTGGACTCCA 240
Query 328 GAGGAGGATGAGACACTTAGACGAGCAGTTGAAAAGTATAAGGGGAAGAGGTGGAAGAAA 387
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 241 GAGGAGGATGAGACACTTAGACGAGCAGTTGACAAGTATAAGGGGAAGAGGTGGAAGAAA 300
Query 388 ATAGCGGAATTTTTCCCAGAGAGAACAGAAGTCCAATGCTTGCACAGGTGGCAGAAAGTT 447
|||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 301 ATAGCGGAATTTTTTCCAGAAAGAACAGAAGTCCAATGCTTGCACCGGTGGCAGAAAGTT 360
Query 448 CTTAATCCAGAGCTTGTTAAAGGACCTTGGACTCAAGAGGAGGATGATAAAATCGTTGAA 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CTTAATCCAGAGCTTGTTAAAGGACCTTGGACTCAAGAGGAGGATGATAAAATCGTTGAA 420
Query 508 CTTGTaaaaaaaTATGGACCTGCCAAATGGTCTGTCATCGCCAAGTCCTTACCAGGTCGT 567
||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||
Sbjct 421 CTTGTAAAAAAATATGGACCTGCCAAATGGTCTGTTATCGCGAAGTCTTTACCAGGTCGT 480
Query 568 ATTGGGAAACAATGTCGAGAAAGGTGGCACAACCATTTAAATCCTGGTATTAGAAAGGAT 627
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ATCGGGAAGCAATGTCGAGAAAGGTGGCACAACCATTTAAATCCTGGTATTAGAAAGGAT 540
Query 628 GCTTGGACCGTAGAAGAAGAATCAGCTCTCATGAATTCTCATCGAATGTACGGAAACAAA 687
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GCTTGGACCATAGAAGAAGAATCAGCTCTCATGAATTCTCATCGAATGTACGGAAACAAA 600
Query 688 TGGGCGGAAATTGCTAAGGTTTTACCAGGAAGGACTGATAACGCCATAAAGAACCATTGG 747
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 601 TGGGCGGAAATTGCTAAGGTTTTACCGGGAAGGACTGATAACGCCATAAAGAACCATTGG 660
Query 748 AATAGTTCACTGAAGAAAAAATTAGAGTTCTACTTAGCAACTGGTAACTTGCCACCGCCA 807
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 661 AATAGTTCACTGAAGAAAAAGTTAGAGTTCTACTTAGCAACCGGTAACTTGCCACCGCCA 720
Query 808 GCAAGCAAATTCATCGTTCTGAAAGATATTGCTGATGGAGACAGAGATTCCAAGCAGTCT 867
|||| |||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 721 GCAACCAAATTCAGCGTTCTGAATGATATTGGTGATGGAGACAGAGATTCCAAGCAGTCT 780
Query 868 AGTGCAACTAAACCTTTCAAGGATTCTGATTC-GCTTACCCAAACCTCTTCAGGAAATAC 926
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 781 AGTGCAACTAAACCTTTCAAGGATTCTGATTCTG-TTACCCAAACCTCTTCAGGAAATAC 839
Query 927 AGATTCAAATGAAGTTGGAAGAGACCATTTTGACTCTTCTTCCGCTCTGCTTGAAGAAGT 986
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 840 AGATTCAAATGAAGTTGGAAGAGACCATTTTGACTATTCTTCAGCTCTGCTTGAAGAAGT 899
Query 987 AGCTGCTTCACGAAGAATCGGTGTCAATGAGTATGCTTGCTCTCCTGTTGAGTACAAGCC 1046
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 900 AGCTGCTTCACGAAGAATCGGTGTCAATGAGTATGCTTGCTCTCCCGTTGAGTACAAGCC 959
Query 1047 TCAGTTGCCTAATCTGGAACCAATTTCAGAGGAAGTCAGAATCAACTCAAAAGCTTATTT 1106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 TCAGTTGCCTAATCTGGAACCAATTTCAGAGGAAGTCAGAATCAACTCAAAAGCTTATGG 1019
Query 1107 TGAGAGATCAATCCAGAGGAAAGTAGAAAACGGGTTTGGAACTCCAAAGCATGGGAATTT 1166
||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||
Sbjct 1020 TGAAAGATCAATCCAGAGGAAAGAAGAAAATGGGTTTGGAACTCCAAAGCATGGGAGTTT 1079
Query 1167 ATACTATAAGTCTCCACTTGACTATTACTTTCCATCAGAAGCGGATCTGCAACATATGTA 1226
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1080 ATACTACAAGTCTCCACTTGACTATTACTTTCCATCAGAAGCGGATCTGCAGCATATGTA 1139
Query 1227 CGGATATGAATGTGGTTGCAGTCCCGGTGCTGCATCACCAGTCAGCTTAATGACTACACC 1286
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1140 CGGATATGAATGTGGTTGCAGTCCCGGTGCTGCATCACCAGTCAGCTTAATGACTCCACC 1199
Query 1287 CTGTAATAAAGACAGTGGTTTAACTGCAACGAGAAGTCCTGAATCTTTCTTGAGAGAAGC 1346
||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 1200 GTGTAATAAAGACAGTGGTTTAGCTGCAACAAGAAGTCCTGAATCTTTCTTGAGAGAAGC 1259
Query 1347 TGCTAGGACTTTTCCAAACACACCTTCTATTTTTAGGAAAAGGCGAAAGGTTGTTTTGGC 1406
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1260 TGCTAGGACTTTTCCAAACACACCTTCTATTTTTAGGAAAAGGCGAAAAGTTGTTTTGGC 1319
Query 1407 AGCGAAAACAGATGCTGTTGTTGTTGTTAATGGTGTAGTTAAGGAAGTTGATCGAAAAGA 1466
|||||| |||||| |||||||||| |||| || ||||||||||||||||| ||||||
Sbjct 1320 GGCGAAAGCAGATGATGTTGTTGTT---AATGTTGGAGTTAAGGAAGTTGATCAAAAAGA 1376
Query 1467 AGAAAGTAAAGATA-T---GA----------G-----A-A-AAAGTTTGTTGCTGGAGAC 1505
||| |||||||||| | || | | | |||||||||||||||||||
Sbjct 1377 AGACAGTAAAGATAGTTCAGATATTTCTCCAGCTGGGAGAGAAAGTTTGTTGCTGGAGAC 1436
Query 1506 AACTGATAATTGCAGTGATGATGA-AGAACTCGGGTT-AAATGGAAATGCTTTCAATTTG 1563
||||||| ||||||| |||||||| | |||| || | |||||| ||||||||||| ||
Sbjct 1437 AACTGATGATTGCAGGGATGATGACA-AACT-GGAATCAAATGGGAATGCTTTCAACGTG 1494
Query 1564 TCTCCACCATATCGGTTAAGAGCTAAAAGAACAGCTGTAATCAAATCAAGACAGCTTGAG 1623
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1495 TCTCCACCATATCGATTAAGAGCTAAAAGAACAGCTGTAATCAAATCAAGACAGCTTGAG 1554
Query 1624 TTTACATCTGAAAAGGAGAAGCA 1646
||||||| || ||||||||||||
Sbjct 1555 TTTACATTTGCAAAGGAGAAGCA 1577
> Ahg341076 jgi|Araly1|341076|fgenesh1_pg.C_scaffold_3000839
Length=3738
Score = 621 bits (336), Expect = 6e-177
Identities = 581/695 (84%), Gaps = 34/695 (5%)
Strand=Plus/Plus
Query 140 GTGAAATGAAAATTGA-GATTCAATGTATGGAGAATAAGCAACCATTAGCTGCTTCTTGC 198
||||| |||||||||| || ||| ||| | || || |||||| || | ||||||| |||
Sbjct 1874 GTGAAGTGAAAATTGAGGA-TCAGTGTGTAGAAAACAAGCAATCAACACCTGCTTCGTGC 1932
Query 199 TCTTCTGCATCCGAAGGTAGTGGCTGTTTCTTC-CTCAAGTCACCTGA-AATCGCAA--- 253
||||||| ||| ||||||||| |||| | ||| | |||||||||| | ||| ||||
Sbjct 1933 TCTTCTGTATCTGAAGGTAGT-GCTGGTAGTTCTCACAAGTCACCT-ACAATTGCAAGTC 1990
Query 254 CTCCTGCCACAG--T-ATC--TTCAT---TTCCTC-GGAGGACTAGTGGACCTATGAGAC 304
|||||||||||| | | | |||| | |||| ||||||| ||||| ||||| || |
Sbjct 1991 CTCCTGCCACAGTTTCACCAACTCATAGATACCTCGGGAGGACGAGTGGCCCTATAAGGC 2050
Query 305 GAGCAAAAGGTGGTTGGACTCCAG-AGGAGGATGAGACACTT-AGACGAGCAGTTGAAAA 362
|||| |||||||| |||||||| | | |||||||||||| || ||||||||||||| |
Sbjct 2051 GAGCGAAAGGTGGATGGACTCCGGCA-GAGGATGAGACA-TTGAGACGAGCAGTTGGCAC 2108
Query 363 GTATAAGGGGAAGAGGTGGAAGAAAATAGCGGAATTTTTCCCAGAGAGAACAGAAGTCCA 422
|||||| |||||||| |||||||| |||||| |||||||||| || ||||| ||||| ||
Sbjct 2109 GTATAAAGGGAAGAGCTGGAAGAATATAGCGAAATTTTTCCCTGATAGAACTGAAGTTCA 2168
Query 423 ATGCTTGCACAGGTGGCAGAAAGTTCTTAATCCAGAGCTTGTTAAAGGACCTTGGACTCA 482
|||| ||||| |||||||||||||||| |||||||| ||| |||| ||||||||||| ||
Sbjct 2169 ATGCCTGCACCGGTGGCAGAAAGTTCTAAATCCAGACCTTATTAAGGGACCTTGGACACA 2228
Query 483 AGAGGAGGATGATAAAATCGTTGAACTTGTaaaaaaaTATGGACCTGCCAAATGGTCTGT 542
|||||||||||| |||||||||||||| || ||||||| || ||||| |||||||||||
Sbjct 2229 AGAGGAGGATGAGAAAATCGTTGAACTCGTTGAAAAATACGGGCCTGCGAAATGGTCTGT 2288
Query 543 CATCGCCA-AGTCCTTACCAGGTCGTATTGGGAAACAATGTCGAGAAAGGTGGCACAACC 601
|||| || |||| ||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 2289 TATCG-CACAGTCTTTACCAGGTCGAATTGGGAAGCAATGTCGAGAAAGGTGGCACAACC 2347
Query 602 ATTTAAATCCTGGTATTAGA-AAGGATGCTTGGACCGT-AGAAGAAGAA-TCAGCTCTCA 658
|||| ||||||| ||||| | ||||||||||||||| | ||| |||||| | ||||||||
Sbjct 2348 ATTTGAATCCTGATATTA-ACAAGGATGCTTGGACC-TCAGAGGAAGAAGT-AGCTCTCA 2404
Query 659 TGAATTCTCATCGAATGT-ACGGAAACAAATGGGCGGAAATTGCTAAGGTTTTACCAGGA 717
||||| ||||||||| | |||||||||||||||| |||||||||||||| ||||| ||
Sbjct 2405 TGAATGCTCATCGAA-GCCACGGAAACAAATGGGCTGAAATTGCTAAGGTCTTACCTGGC 2463
Query 718 AGGACTGATAACGCCATAAAGAACCATTGGAATAGTTCACTGAAGAAAAAATT-AGAGTT 776
||||||||||| || ||||||||||||||||||||||||||||| ||| || | ||| ||
Sbjct 2464 AGGACTGATAATGCAATAAAGAACCATTGGAATAGTTCACTGAA-AAAGAAGTCAGAATT 2522
Query 777 CTACTTAGCAACTGGTAACTTGCCACCGCCAGCAA 811
||||| | ||||||| || ||||| ||| |||
Sbjct 2523 CTACTCAATGACTGGTAGGTTACCACCACCAACAA 2557
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77323197350
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5