BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G02340.1
Length=1896
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939611 jgi|Araly1|939611|scaffold_600155.1 267 3e-70
> Ahg939611 jgi|Araly1|939611|scaffold_600155.1
Length=670
Score = 267 bits (144), Expect = 3e-70
Identities = 403/522 (77%), Gaps = 42/522 (8%)
Strand=Plus/Plus
Query 76 TCCGGTGAAGACATCC-CTCT-C-CAACCTCTTTTCCTT-TGT-CCTCTCTTACGTGTCA 130
||||||| ||||| || | || | ||||||||||| ||| ||| ||||| |||||| |||
Sbjct 138 TCCGGTGGAGACAACCGCCCTACTCAACCTCTTTT-CTTATGTCCCTCT-TTACGTCTCA 195
Query 131 AAACTCA-CAGCCAAAAAGATCCGGAGGCTAA--TT-ATGATGACCAAGGCTTTG-TCCT 185
|| ||| ||| |||| || | ||| || || || ||| || | || |||
Sbjct 196 AAGTTCACCAG-TTAAAACATAAGAAGG--AAGCTTCAT-CTGA-TAA--C-ATGTTCCC 247
Query 186 GTTCGATATTTCCCCTCACTTCCCAAGC-GCTGATCCACAAGTCCACTATATGCTTGATT 244
| || ||| |||||| |||||||| ||| | ||||| ||||||||| ||| |||||||||
Sbjct 248 GCTCAATACTTCCCCACACTTCCCCAGCAG-TGATCAACAAGTCCAATATCTGCTTGATT 306
Query 245 CTC-ACAACCGCGGTCTTATCTGTAAGCTCCCTGTTCTCCCTCTCTTTTGGTGCAACAAT 303
| | ||| || | | |||| |||||||| |||||| |||||||||||||||||||||||
Sbjct 307 C-CGACAGCCATGATGTTATATGTAAGCTTCCTGTTGTCCCTCTCTTTTGGTGCAACAAT 365
Query 304 AAAGAACCT-A-A-TG--G-TGCCGACTTCTGTTGTAGTGCATGCAAAATCACAAATCTT 357
|||||| || | | || | || || || | |||| ||||||| | | |||| | |
Sbjct 366 AAAGAATCTGATAATGATGATGGGGAATTTTATTGTGGTGCATGTTATGGCTCAAAACAT 425
Query 358 GGCACAGCCTACTATTTTTGTAC-CACATGTCGTAAA-AAGTTCCACAAAGAATGTGTGG 415
|| ||| ||| ||||||||| | ||||||| ||||| || |||||||||||||||||||
Sbjct 426 GGTACAAACTATTATTTTTGT-CTCACATGTGGTAAACAA-TTCCACAAAGAATGTGTGG 483
Query 416 AGTCTCCACTTGAAATCAAACATCCTTCCTATCCTTTTCAATCTCTCCAACTTTATAGTT 475
|||||||| |||| |||||||| |||||||||||||||||||||||||| |||||| ||
Sbjct 484 AGTCTCCATTTGAGATCAAACACCCTTCCTATCCTTTTCAATCTCTCCAGCTTTATTGTC 543
Query 476 CTCCCTTT-GCCC-TTGTGAATTGCATTTGTTGTGATATAAGTTTCCAAGACATGAT-TT 532
||||||| ||| |||| ||||| |||||||| | || ||||| | ||| | ||
Sbjct 544 CTCCCTTGAGCCTATTGTT--TTGCAACTGTTGTGAAACAAATTTCCTTCAAATG-TCTT 600
Query 533 ATCATTCTTCTACTTACAAACTGAG-TATGCATCCTGTTTGT 573
|||| | | |||| ||||| || | ||||||||| ||||||
Sbjct 601 ATCAATGTCCTACCTACAA-CTTAACTATGCATCCGGTTTGT 641
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71228758150
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5