BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G02370.1
Length=2417
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487012 jgi|Araly1|487012|fgenesh2_kg.6__146__AT5G02370.1 3243 0.0
> Ahg487012 jgi|Araly1|487012|fgenesh2_kg.6__146__AT5G02370.1
Length=2348
Score = 3243 bits (1756), Expect = 0.0
Identities = 2155/2343 (92%), Gaps = 46/2343 (2%)
Strand=Plus/Plus
Query 70 TTGTTAGATTCGTCTTCGATTTCTAATGTCAGAGTCGTCCTTAGGGTTCGTCCTTTTCTT 129
||||| ||||| |||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 41 TTGTTGGATTCTTCTTCGATTTCTAAAGTCAGGGTCGTCCTTAGGGTTCGTCCTTTTCTT 100
Query 130 CCCCGGGAGATTTCGGACGAGAGTTGTGACGGGAGATCGTGCGTTTCCGTAATCGGCGGC 189
|||| | ||||||| | | | | |||||||||||||||||||| | ||
Sbjct 101 CCCC----G-----GGACGAG-G--G-G-C----GATCGTGCGTTTCCGTAATCAACAGC 142
Query 190 GATGGAGGAGATACCAGCGAAGTGGCGGTTTACCTCAAAGATCCAGATAGCTGTCGTAAC 249
|||| ||||| | ||||||||| | ||| |||||||||||||||| ||||||||||||
Sbjct 143 GATGCCGGAGAGGCTAGCGAAGTGACAGTTCACCTCAAAGATCCAGAGAGCTGTCGTAAC 202
Query 250 GAAAGCTATCAGCTGGATGCGTTTTACGGGAGAGAGGATGATAATGTGAAGCATATATTC 309
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 203 GAAAGCTATCAGCTGGATGCGTTTTACGGGAGAGATGATGATAATGTGAAGCAGATATTC 262
Query 310 GATAGAGAAGTAAGCCCTTTGATTCCTGGGATCTTTCATGGTTTCAATGCTACTGTGCTT 369
||||||||| ||||||||||||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 263 GATAGAGAATTAAGCCCTTTGATTCATGGGATCTTTCATGGTTTCAACGCTACAGTGCTT 322
Query 370 GCTTATGGAGCCACCGGAAGCGGAAAGACTTTTACGATGCAGGGAATCGATGAGCTACCA 429
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 323 GCTTATGGAGCCACCGGAAGCGGAAAGACGTTTACGATGCAGGGAATTGATGAGCTACCA 382
Query 430 GGTCTGATGCCATTGACCATGTCCACCATTCTGTCTATGTGCGAGAAGACAAGG-AGTAG 488
||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||
Sbjct 383 GGTCTGATGCCATTGACCATGTCCAACATTCTGTCTATGTGCGAGAAGAC-AGGAAGTAG 441
Query 489 GGCTGAGATTTCATATTATGAAGTTTACATGGACAGATGTTGGGATCTTC-TAGAAGTTA 547
|| || |||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 442 AGCAGATATTTCATATTATGAAGTTTACATGGACAGATGTTGGGATC-TCTTAGAAGTTA 500
Query 548 AAGACAACGAGATTGCTGTTTGGGATGATAAAG-ATGGACAAGTTCATCTTAAGGGACTT 606
||| ||| ||||||||| ||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 501 AAGCCAATGAGATTGCTATTTGGGATGAT-AAGAATGGACAAGTTCATCTTAAGGGACTT 559
Query 607 TCTAGTGTCCCTGTTAAGTCCATGTCTGAGTTTCAAGAGGCGTATTTGTGTGGCGTTCAG 666
||||||||||||||||| |||||| |||||||||| ||||| || | |||||||||||||
Sbjct 560 TCTAGTGTCCCTGTTAACTCCATGCCTGAGTTTCACGAGGCATACTCGTGTGGCGTTCAG 619
Query 667 AGGAGGAAAGTTGCACACACTGGTTTAAATGATGTCTCTAGTAGAAGCCATGGAGTGCTT 726
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 620 CGGAGGAAAGTTGCACACACTGGTTTAAATGATGTCTCTAGTAGAAGCCATGGAGTGCTT 679
Query 727 GTGATCTCAGTAACCTCACAAGGG-CTTGTCACTGGTAAAATCAATCTGATTGATCTTGC 785
||||||||||||||||| |||||| || |||||||| ||||||||| ||||||| || ||
Sbjct 680 GTGATCTCAGTAACCTCTCAAGGGGCT-GTCACTGGAAAAATCAATTTGATTGACCTGGC 738
Query 786 AGGTAACGAAGACAATAGAAGGACAGGCAATGAAGGGATCCGT-TTACAAGAGAGTGCCA 844
|||||||||||| ||||||||||||||||||||||| |||||| || |||||||||||||
Sbjct 739 AGGTAACGAAGATAATAGAAGGACAGGCAATGAAGGAATCCGTCTT-CAAGAGAGTGCCA 797
Query 845 AGATTAATCAGTCATTATTTGCATTGTCCAATGTGGTTTATGCACTGAATAATAACCTCC 904
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 798 AGATTAATCAGTCATTATTTGCTTTGTCCAATGTGGTTTATGCACTGAATAATAACCTGC 857
Query 905 CTAGAGTGCCATACAGGGAAACCAAATTGACTAGAATACTGCAGGATTCACTTGGTGGAA 964
| ||||| || |||||||||| ||||||||||||||| ||||||||||||||||| ||||
Sbjct 858 CAAGAGTTCCTTACAGGGAAAGCAAATTGACTAGAATCCTGCAGGATTCACTTGGAGGAA 917
Query 965 CAAGTAGGGCTCTCATGGTCGCATGTCTGAATCCTGGAGAATACCAAGAATCTCTTCGCA 1024
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 918 CAAGTAGGGCTCTCATGGTCGCATGTCTGAATCCTGGAGAATACCAAGAATCTCTTCGCA 977
Query 1025 CCGTTAGCCTGGCTGCAAGGTCAAGGCACATCTCAAACAATGTTTCTCTGAATCCCAAGG 1084
| |||||| |||||||||||||||||||||| ||||||||| ||||| ||||||||||||
Sbjct 978 CTGTTAGCTTGGCTGCAAGGTCAAGGCACATTTCAAACAATATTTCTTTGAATCCCAAGG 1037
Query 1085 TAGAGACCCCCAAGGTTAAGATAGACATGGAAGCAAAACTGCAAGCTTGGCTTGAATCAA 1144
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 1038 TAGAGACCCCCAAGGTTAAGATAGATATGGGAGCAAAACTGCAAGCTTGGCTTGAATCAA 1097
Query 1145 AAGGCAAGATGAAGAGCGCGCATAGAATGATGGCAATACGGTCTCCATTGATGGGTACAA 1204
||||||||| ||| || ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1098 AAGGCAAGACGAAAAGTGCGCATAGAATGATGGCAATACGTTCTCCATTGATGGGTACAA 1157
Query 1205 ACCAGACTTCAATTTCTCAAAGCTCAGTCAAGAAATTACTC-TGTCATAGATCAGCCATT 1263
||||||||||||||||||||||||||||||||||| | | ||||| |||||| |||||
Sbjct 1158 ACCAGACTTCAATTTCTCAAAGCTCAGTCAAGAAACT-CGGATGTCAAAGATCAACCATT 1216
Query 1264 GCAGAAAGTGCTAAGCTTGCCGGCACAGGACAGAGGGACGCATTTGTGACCGCAAGAAAC 1323
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1217 GCAGAAAGTGCTAAACTTGCTGGCACAGGACAGAGGGACGCATTTGTGACCGCAAGGAAC 1276
Query 1324 TTATTTGGTGTGGAAACTCTTGCTGCTTCACATTTATGGGAACCTATACGGAATCTGCAG 1383
|||||||||| |||||||| |||||||||||||||||||||||| |||| |||||||||
Sbjct 1277 TTATTTGGTGGGGAAACTCATGCTGCTTCACATTTATGGGAACCAATACAGAATCTGCAC 1336
Query 1384 TTAGCTTCTCCAACCAAAGAAGATGAGAGAGACACATCTGGCGAAGAGAATCTATTGGTA 1443
||||||||||||||||||| |||||||||||||||||||| | |||| ||||||||||||
Sbjct 1337 TTAGCTTCTCCAACCAAAGGAGATGAGAGAGACACATCTGCCAAAGATAATCTATTGGTA 1396
Query 1444 TCAGAAGCAAGCTTGAGAGATAACACATT-GGATGTCGAGAAGAAATATACTGAACTGAG 1502
||||||||||||||||||||||| || | || |||| ||| |||| || ||||||||
Sbjct 1397 CCAGAAGCAAGCTTGAGAGATAACTCACTCGGGC-TCGAAAAGGAATACACAGAACTGAG 1455
Query 1503 TCCTCTTCGAGAAGCTCTATCTCCAATAGACTCCAATGCAAAACCAAATTCAGCACACGG 1562
|||| ||||||||||||| |||||| ||||||| |||||| ||||| |||||| | |
Sbjct 1456 TCCTTTTCGAGAAGCTCTGTCTCCAGTAGACTCAAATGCA---CCAAAATCAGCAGATGC 1512
Query 1563 AAGCTCTCCTTTTCTGAAGCCAATGACCCCAAAAACACCTTTTCTTTCTACAAACCCTGA 1622
||||||||| |||| ||||||||||| ||||||||||||||| ||| | |||| ||||
Sbjct 1513 AAGCTCTCCCATTCTCAAGCCAATGACTCCAAAAACACCTTTTATTTATGCAAATGCTGA 1572
Query 1623 -AATTATGCAGATGGAAGGCACTTGCCAGAAGTTCAATGCATGGAGCAATAATTTAAAGA 1681
||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1573 GAAT-ATGCAAATGGAAGGCACTTGCCAGAAGTTCAATGCATGGAGCACTAATTTAAAGA 1631
Query 1682 CCTCTCTCATAAAAGAGTACATTCACTTCTTGAACACAGCCAACAGAGAGGAGCTAAGGG 1741
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1632 CCTCTCTCATAAAAGAGTACATTCACTTCTTGAACACAGCCAACAGAAAGGAGCTAAGGG 1691
Query 1742 AATTAAAGGGAATTGGGCAGAAGATGGCTGAGTACATCATTGAACTCAGAGAAACAAGCC 1801
| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1692 AGTTAAAGGGAATTGGACAGAAGATGGCTGAGTACATTATTGAACTCAGAGAAACAAGCC 1751
Query 1802 CTTTAAAATCGCTTACCGACTTAGAAAAGATCGGTTTCACCTCAAGACAGGTACATAACC 1861
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1752 CTTTAAAATCGCTTACCGACTTAGAGAAGATCGGTTTCACCTCAAGACAGGTACATAACC 1811
Query 1862 TATTCAAAAAAGCCACTGAAGGAGTCCTCGAGAAGCCAGTTTCTGCTTCAACAACACCTT 1921
||||||||||||||| |||||| | || |||||||||||||||||||||||||||||||
Sbjct 1812 AATTCAAAAAAGCCACAGAAGGAATTCTTGAGAAGCCAGTTTCTGCTTCAACAACACCTT 1871
Query 1922 AGTTGTTGTCTCTAGCAAACAA-CAACACTTGTGTATTATATCAGTTCTATCTCGTGTAA 1980
|||||||||||||||||||||| ||||||||||||||||| |||||| ||||| ||||
Sbjct 1872 AGTTGTTGTCTCTAGCAAACAAACAACACTTGTGTATTATG--AGTTCTGTCTCGCGTAA 1929
Query 1981 TTTCATTATTGTCTGTTCTTGTATGTTTAAGCTTTATAACCAGAGAGACAATGGGCTTGA 2040
| |||||||||||||||||||| ||||||| ||||||||||||||||| | || |||||
Sbjct 1930 TCTCATTATTGTCTGTTCTTGTTTGTTTAA-CTTTATAACCAGAGAGATA-TGTACTTGA 1987
Query 2041 ATCTTAATTGTGTAGTGAGCAAGAAAGAAGCAAACTTTAATACAAACCCATAATAGTCTT 2100
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 1988 ATCTTAATTGTGTACTGAGCAAGAAAGAAGCAAACTTTAATACAGACCCATAATAGTTTT 2047
Query 2101 AGGATTAATAAAGTCACAAAGATAAAACTTTGCAGAGATATCTTAATGACCAAACCATAA 2160
| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2048 CG-ATTAATACAGTCACAAAGATAAAACTTTGCAGAGATATCTTAATGACCAAACCATAA 2106
Query 2161 AAACACACACA-GAA-GAAGAGAAAGACCAACGTCGCCGGCAAAACTACCGGAAAAATCA 2218
|| |||||| | ||| |||||||||||||||||||||||||||||||||||| | ||||
Sbjct 2107 AA-CACACAGAAGAAAGAAGAGAAAGACCAACGTCGCCGGCAAAACTACCGGCGACATCA 2165
Query 2219 GCCAATTATTACATATAAGCAAACCTAACATAACATTAGGGTTATTACAGACTTAGGGTT 2278
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2166 GCTAATTATTACATATAAGCAAACCTAACATAACATTAGGGTTATTACAGACTTAGGGTT 2225
Query 2279 TATGAAGTTCTTCATTTGCAGGCAGATCCACAACCACAGCTTCCACCACAGCAAGACATG 2338
|||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 2226 TATGGAGTTCTTCATTTGCAGCCAGATCCGCAACCACAGCTTCCACCACAGCAAGACATG 2285
Query 2339 TTTTTTCTAGAAAATTGGAAGAGATCTGAGAAGATTTATGAAGATGATCTTAATTTGCCT 2398
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 2286 TTTTTTCTAGAAAATTGGAAGAGATCTCAGAAGAATTATGAAGATGATCTTAATTTGCCT 2345
Query 2399 TAA 2401
|||
Sbjct 2346 TAA 2348
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91073775795
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5