BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G02390.1
Length=2635
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487015 jgi|Araly1|487015|fgenesh2_kg.6__149__AT5G02390.1 3661 0.0
> Ahg487015 jgi|Araly1|487015|fgenesh2_kg.6__149__AT5G02390.1
Length=2497
Score = 3661 bits (1982), Expect = 0.0
Identities = 2350/2524 (93%), Gaps = 39/2524 (2%)
Strand=Plus/Plus
Query 1 ATGGGGAAGAACTTGCGTCACAAAGTTACTTGCTCCCCAATCCAAAACCACCCTGGATTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGGAAGAACTTGCGTCACAAAGTTACTTGCTCCCCAATCCAAAACCACCCTGGATTC 60
Query 61 ATGTGGGG-TCTATTTGACATTCTTAAACACAACCATTGGCGTTACATCAAGAAACGACT 119
|||||||| | |||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 61 ATGTGGGGAT-TATTTGACATTCTTAAGCATAACCATTGGCGTTACATCAAGAAACGACT 119
Query 120 TCCTCACAAAAGACCCG---TTTGTAGAAGAACCGCTCCTGGAACAAAAAACGAAGTAAA 176
|||||| |||||||||| |||||||||||| ||||||||||||||| ||||| |||
Sbjct 120 TCCTCATAAAAGACCCGTTATTTGTAGAAGAAATTCTCCTGGAACAAAAAGCGAAGCAAA 179
Query 177 CAACACTATACCATCATCACCAGATGGTATTCCAGTACCCAAGATCAAGCTGGAAGATAA 236
| | || | || ||| |||||||||||||| |||||||||| |||||||||||||||
Sbjct 180 C-A-AC---A-CA--ATC-CCAGATGGTATTCCCGTACCCAAGACCAAGCTGGAAGATAA 230
Query 237 AACAGATGTAGAATCTGTGCAAAGACCAAAGAAGCCTAGTTCTGCAGTAAAGTCCAAAGA 296
|||||||||||| |||| |||||| ||||||| |||||||||||||||||| ||||||||
Sbjct 231 AACAGATGTAGACTCTGGGCAAAGGCCAAAGAGGCCTAGTTCTGCAGTAAAATCCAAAGA 290
Query 297 GTCTTCCAACTCAGGAGAGAAAACAAAAAAGAAGCATAATCCAGAGGAGAAGTCCAAGAA 356
|||||| |||||||| |||||| ||||||||||||||| | |||||||||||||||||||
Sbjct 291 GTCTTCTAACTCAGGGGAGAAACCAAAAAAGAAGCATATTTCAGAGGAGAAGTCCAAGAA 350
Query 357 ACTTAATTCAGAAGAGAGGTCAAGAAAAACACATTCTGAAATCAAAAGGTCTGTGAAAGC 416
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||
Sbjct 351 ACTTAATTCAGAAGAGAGGTCAAGAAAAACACATTCTGAAATCAAAAGATCTGTCAAGGC 410
Query 417 TTTGATCAAGGCACTTGTAATAGAGGACAAGTCTAAGAAGAAAGGCCGTCACCACCGTAG 476
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 411 TTTGATCAAGGCACTTGTAATAGAGGACAAGTCTAAGAAGAAAGGCCGTCATCACCGTAG 470
Query 477 CTGTACTTATCCTGTCCAGTCAAACT-CAAAAGAGAAGGATTCATTGAGTGAGGTTGGAT 535
|||||||||||||||||||||||| | ||||||||||||| |||||||||||||||| ||
Sbjct 471 CTGTACTTATCCTGTCCAGTCAAA-TCCAAAAGAGAAGGAGTCATTGAGTGAGGTTGAAT 529
Query 536 CTTCAGATAAGAATTCCTCAAATGGTGATGAACGTAACCGTGTCTTTAACAAGAAGGTTG 595
||||||| ||||||||||||||||||||||| |||||||| ||||||||||||| |||||
Sbjct 530 CTTCAGACAAGAATTCCTCAAATGGTGATGATCGTAACCGAGTCTTTAACAAGACGGTTG 589
Query 596 GCATTTCACCCGCGGTTGGTTCGTTGAACCCGCTTTATCTCATGTCTGAGGAATCAAGCA 655
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 590 GCATTTCACCCGCGATTGGTTCTTTGAACCCGCTTTATCTCATGTCTGAGGAATCAAGCA 649
Query 656 ACAGTGACAGTGAAGAGTTTAGAGTAGATAACAACATTCAAGTTGATGATAACACTGATG 715
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 650 ACAGTGACAGTGAAGAGTTTAGAGTAGAGAACAACATTCAAGTTGATGAT---ACTGATG 706
Query 716 GAAGCAAATCAGATTTTGATGAAAAAGAGTTTAAGAAAAAAGAGAAGAGTGATGATGAGG 775
|||| |||||||||||||||||||||||||| |||||||| || ||||| || ||||| |
Sbjct 707 GAAGTAAATCAGATTTTGATGAAAAAGAGTTCAAGAAAAAGGACAAGAGCGACGATGATG 766
Query 776 AAGCTTGGTTTGACCCAAAGATGAGACACACCAAGGGCTTCTCAGAAAATGATGATGATA 835
|||||||||||||||||||||||||||||| ||||| ||||||||| ||||| |||||||
Sbjct 767 AAGCTTGGTTTGACCCAAAGATGAGACACAACAAGGACTTCTCAGAGAATGAGGATGATA 826
Query 836 CATCACCTAGAAGGTCAAAAGCATGTCTTGATGCTCTTAACTTGATACACATGAATAGAA 895
||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 827 CATCACCTAGACGGTCAAAAGCATGTCTTGATGCTCTTAATTTGATACACATGAATAGAA 886
Query 896 ACTTCTTGTT-AAAGGTATTGCAGGATCCGGGTTCTCCTCTAGCCCGGCATTTCCAGAGC 954
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 887 ACTTCTTGTTGAAA-GTATTGCAGGATCCGGGTTCTCCTCTAGCCCGGCATTTCCAGAGC 945
Query 955 CAACAATCTTTTAGCTCCAAAACTATGACTAAAGCTGGATCCTTTCCTACTCATGGTATC 1014
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| | |
Sbjct 946 CAACAATCTTTTAGCTCAAAAACAATGACTAAAGCTGGATCCTTTCCTACTCATGGAAGC 1005
Query 1015 AATAGAGAGGATCATAATAAAGCGTTTGACCCGGTGGGAGATGTCGATAAAATACCGATG 1074
|| ||||||||||||||||| | ||||||| | ||||||||| || |||||| ||| |
Sbjct 1006 AACAGAGAGGATCATAATAATGGGTTTGACTCAGTGGGAGATATCCATAAAAAACC-A-- 1062
Query 1075 TC-TCCTCCTTCCATAGCTGCAGAGCACAGAGCTGATGGGATTCAGAAGATGAATGAAAC 1133
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1063 ACAT-CTCCTTCCATAGCTGCAGAGCACAGAGCTGATGGGATTCAGAAGATGAATGAAAC 1121
Query 1134 AGTGTTGAAATTGGGTGATGAAGATTCATCTGGTTCTGGTTATGCAAGGAAGCGAGGAAA 1193
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1122 AATGTTGAAATTGGCTGATGAAGATTCATCTGGTTCTGGTTATGCAAGGAAGCGAGGAAA 1181
Query 1194 GAACCAAGTTGTGATCAAACGTTTCAAGGATCTAAGACAGAAGATAAAGCATGTGATTAA 1253
|||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||
Sbjct 1182 GAACCAAGTTGTGATCAAACGTTTTAAGGATCTAAGGCAGAAGATTAAGCATGTGATTAA 1241
Query 1254 TGAGAACAAGAACGAGAAACACCGTATCACTATGGATGCTGTGTTGGACAAAGTACCTCG 1313
||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1242 CGAGAACAAGAATGAGAAACACCGTATCACTATGGATGCTGTTTTAGACAAAGTACCTCG 1301
Query 1314 GAAGTACGGTTTTTCGAAAGATTTGAGAGACGATATTTTCGAACACTTGAAAGGAAACTC 1373
|||||||||||||| ||||||||||||||||| ||||| | |||||| |||||||||||
Sbjct 1302 AAAGTACGGTTTTTCTAAAGATTTGAGAGACGACATTTTTGCACACTTAAAAGGAAACTC 1361
Query 1374 TGCAGCTAAGAACAACAACAAAGCAGAAGGTACAAAACTGAAGCAAATAACAAGAGCTTC 1433
||||||||||| || || ||||||||| || || |||||||||||||| ||||| ||
Sbjct 1362 TGCAGCTAAGAGCAGCATCAAAGCAGATGGCGTGAAGCTGAAGCAAATAACTAGAGCATC 1421
Query 1434 GTCGCTGTGTGGTTCGCTGGATAGATATCTTCAGCTCTATGAGTGTAGCTTCCAAAGAGA 1493
|||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1422 GTCGCTGTGTGGATCGCTAGACAGATATCTTCAGCTCTATGAGTGTAGCTTCCAAAGAGA 1481
Query 1494 AGCGAAGAACAGTAGTAATTCAGAGAAATCAAAGATGGAGTTAGAGGAATCAGCGTTGCC 1553
|||||||||| |||||||||||||||| |||||||||||||||||||||| || |||||
Sbjct 1482 CGCGAAGAACAATAGTAATTCAGAGAAACCAAAGATGGAGTTAGAGGAATCGGCTTTGCC 1541
Query 1554 TTCTAAGAGAGCTCCTAAATTCTTGGGGAGGATTCTTTCGTTACCTCAAATGAAATTTCA 1613
||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
Sbjct 1542 TTCTAAGAGAGCTCCTAAATTCTTGGGAAGGATTCTTTCGTTACCTGAAATGAAATTTAA 1601
Query 1614 TGCTTTGAAGATTGATGACCTTACTGTCCAATCAATAGAGGAAGAACAAGATGGCTTGGA 1673
|||||||||||||||||||||| ||||||||||||| ||||||||||||| ||| |||||
Sbjct 1602 TGCTTTGAAGATTGATGACCTTCCTGTCCAATCAATCGAGGAAGAACAAGTTGGTTTGGA 1661
Query 1674 CAACATTTCAGAGATCTCAGAAGATCACTCTCAGTCTTCAGAACATGAAACACTTGACCA 1733
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1662 TAACATTTCAGAGATCTCAGAAGATCACTCTCAATCTTCAGAACATGAAACACTTGATCA 1721
Query 1734 AACAATGGA-TGCTTCTGAGGATTCACCCGTTGATGCAGAAACAGAACAAGACAGAGAGA 1792
|||||| || ||||||||| |||||||| ||||| ||||||||||||||||||||||| |
Sbjct 1722 AACAAT-GAGTGCTTCTGAAGATTCACCAGTTGACGCAGAAACAGAACAAGACAGAGACA 1780
Query 1793 TCTCTACGC-T-T-GACGTTG-AACATGAAACAAGATCGTTAAAAGAATCATCAGAAGAA 1848
||||||||| | | |||| || ||| |||||||||||| |||||||||||||||||||||
Sbjct 1781 TCTCTACGCTTGTCGACGCTGAAAC-TGAAACAAGATCTTTAAAAGAATCATCAGAAGAA 1839
Query 1849 AGTCCTAATAACGTTTCTACAGTTGATATTGACGAAAATGCTTCTGTATTTGATATCTCT 1908
||||||||||||||||||||||||| | |||| |||||| ||||||||||||| ||||||
Sbjct 1840 AGTCCTAATAACGTTTCTACAGTTGGTTTTGATGAAAATCCTTCTGTATTTGACATCTCT 1899
Query 1909 CGAGATTTAGATACAGAGACTGTCTCAACAAGCAAACAATTAGATGAAGAAGTCCTCAAC 1968
|||||| |||||||||||| ||||||||||||||||||||| | || ||||||||||||
Sbjct 1900 CGAGATCTAGATACAGAGATTGTCTCAACAAGCAAACAATT--A-GACGAAGTCCTCAAC 1956
Query 1969 ATAGATGCACAAGATAAAGTGAAATTCAACTATGTAAGAGACATTCTCGAGATCTCCGGT 2028
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1957 ATAGATGCACAAGATAAAGTGAAATTCAACTATGTAAGAGACATTCTCGAGATCTCCGGT 2016
Query 2029 TTCAATGCACCAGAATCTCTCTCAATGTGGCAATTAGATTACCAGCCACTGGATCCATTA 2088
||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||
Sbjct 2017 TTCAATGCACCAGAATCTCTCTCAATGTGGCAATTAGATTATCAGCCGTTAGATCCATTA 2076
Query 2089 GTCTACGAAGAAGTGACAACGACAACAACAGGATGTATGTTCCAAGATCCAGAATGTTCA 2148
|||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||
Sbjct 2077 GTCTACGAAGAAGTGACAAC-A-A-CAACAGGATGTATGTTCCAAGATCCAGAATGTTCA 2133
Query 2149 AGAAATGAAGAAGAAGGCGGTAACTGCAACCACTTGCTTCTTTTCGATCTAATCAACGAG 2208
||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 2134 AGAAACGAAGAAGAAGGCGGTAACTGCAACCATTTGCTTCTCTTCGATCTAATCAACGAG 2193
Query 2209 GTACTAATCGAAATCTACGAAAGGTCTTACCATTATTATCCTAAACCGTTATCATCCCTA 2268
||||||||||| ||||||||||||||||||||||||| ||| ||||| ||||||||||||
Sbjct 2194 GTACTAATCGAGATCTACGAAAGGTCTTACCATTATTGTCCCAAACCATTATCATCCCTA 2253
Query 2269 TGTAAGATCCATCCAATGCCGGTGGGGTATAGTGTTTTGAAAGAGGTTTGGGTTAGAATA 2328
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2254 TGTAAGATCCATCCAATGCCAGTGGGGTATAGTGTTTTGAAAGAGGTTTGGGTTAGAATA 2313
Query 2329 AGCTGTTACTTGCGTTACAAGCCATACGACGAACAACAATCGTTTGATAAGGTTATGAGT 2388
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2314 AGCTGTTACTTGCGGTACAAGCCATACGACGAACAACAATCGTTTGATAAGATTATGAGT 2373
Query 2389 AGGGATTTGTCGAGAGACGATGGATGGATGGATTTGCAGTTCGAGAGTGAATGTGTTGGG 2448
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2374 AGGGATTTGTCGAAAGACGATGGATGGATGGATTTGCAGTTCGAGAGTGAATGTGTTGGG 2433
Query 2449 ATTGAAGTTGAGGATTTGATCTTCGAGGAGCTTCTGGAAGAATTGCTTATATCATGTTAA 2508
||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||
Sbjct 2434 ATTGAAGTTGAGGATTTGATCTTCGAGGAGCTTCTAGAAGAATTGCTTGTATCAGGTTAA 2493
Query 2509 TAGG 2512
||||
Sbjct 2494 TAGG 2497
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99377449205
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5