BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G02400.1
Length=2025
Score E
Sequences producing significant alignments: (Bits) Value
Ahg349536 jgi|Araly1|349536|fgenesh1_pg.C_scaffold_6000129 3149 0.0
> Ahg349536 jgi|Araly1|349536|fgenesh1_pg.C_scaffold_6000129
Length=2028
Score = 3149 bits (1705), Expect = 0.0
Identities = 1929/2036 (95%), Gaps = 19/2036 (1%)
Strand=Plus/Plus
Query 1 ATGGGAAATGGAGTCACCACTTTGACCGGTTGCTGTACAGGAACTC-TCGCCGGAGAAAT 59
|||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||
Sbjct 1 ATGGGAAATGGAGTCACCACTTTGACCGGTTGCTGTACAGGAAC-CGTCACCGGAGAAAT 59
Query 60 TTCCCGGCGTTACGACGTATCTCTCGTTCACGATGGACTTGGCCACTCTTTCTGCTATAT 119
||||||||| |||||| | ||||| |||||||| || |||||||||||||||||||| ||
Sbjct 60 TTCCCGGCGATACGACTTTTCTCTTGTTCACGACGGTCTTGGCCACTCTTTCTGCTACAT 119
Query 120 TCGACCAGATCTCCCCGGAGTAGTATTACCTTCGCCGGAG-TCTCCTCTCCGATCAG-AT 177
||||| |||||| |||||||||| ||||| || ||||| | |||||| || |||| |
Sbjct 120 ACGACCGGATCTCACCGGAGTAGTTTTACCGTCTTCGGAGAT-TCCTCTTCGTTCAGAAA 178
Query 178 CATATCCAAG-AA--A-C-C-ACTTTCCGTTCAATCTCCGGCGCATCGGTCAGCGCAAAT 231
| |||||||| || | | | |||||||||||||||||||| ||||||||||||||||||
Sbjct 179 C-TATCCAAGAAACCACCACAACTTTCCGTTCAATCTCCGGTGCATCGGTCAGCGCAAAT 237
Query 232 CCTTCAACGGCGCTCTCCGGAGCTCTGTCATCGGATTCTGATTGTCCGTACAGCTCCGCA 291
||||| || ||||||||||||||||| || ||||||||||| |||||||||||||||||
Sbjct 238 CCTTCCACCGCGCTCTCCGGAGCTCTATCGTCGGATTCTGACTGTCCGTACAGCTCCGCC 297
Query 292 GTCTCCGCCTCCGCATTCGAGAGCTCCGGTAATTTTGCCTCTTTACCACTCCAGCCTGTG 351
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 298 GTCTCCGCCTCCGCATTCGAGAGCTCCGGTAATTTCGCCTCTCTACCACTCCAGCCTGTG 357
Query 352 CCGCGTGGCTCCACGTGGCAATCAGGTCCAATTGTTAACGAGTCGGGTCTCGGGTCAGCT 411
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 358 CCGCGTGGCTCCACGTGGCAATCAGGTCCGATTGTTAACGAGTCGGGTCTCGGGTCAGCT 417
Query 412 CCGTTTGAGCGACGATTTTTATCGGGTCCGATTGAAAGCGGGTTGTATTCGGGTCCGATT 471
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 418 CCGTTTGAGCGACGATTCTTATCGGGTCCGATAGAAAGCGGGTTGTATTCGGGTCCGATC 477
Query 472 GAATCAACgaagaagacggagaaagagaaaccgaagaagatcagaaaaaaacctaaatcg 531
||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 478 GAATCAACGAAGAAGGCGGAGAAAGAGAAACCGAAGAAGATCAGAAAAAAATCAAAATCG 537
Query 532 aagaagaaTTTTCTCACATTCAAAACACTATTCGCGAATCTAATCTCTAACAACAATAAA 591
||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||
Sbjct 538 AAGAAGAATTTTCTCACATTCAAAACACTATTCACGAGTCTAATCTCTAACAAC---AAG 594
Query 592 CCTCGCTTGAAGAAGAGTGTGATCGAGCCGATCAACGGCTCTGATTCATCAGATTCTGGT 651
|||||||||||||||||||||||||||||||||| || ||||||||||||| ||| |||
Sbjct 595 TCTCGCTTGAAGAAGAGTGTGATCGAGCCGATCAATGGTTCTGATTCATCAGGTTCCGGT 654
Query 652 CGTCTTCATCATGAACCTGTGATTACTTCCTCACGAAGCAACGAGAACCCTAAATCTGAT 711
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 655 CGTCATCATCATGAACCTGTGATTACTTCCTCACGAAGCCACGAGAACCCTAAATCTGAT 714
Query 712 CTTGAAGAAGAAGATGAAAAACAGAGCAT-GAACTCTGTTTTAGATGTTCAATGGGCTCA 770
||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||
Sbjct 715 CTTGAAGAAGAAGATGAAAAACAGAGCATCG-ACTCTGTTTTGGATGTTCAATGGGCTCA 773
Query 771 GGGGAAAGCAGGGGAGGATCGTGTACACGTGGTTGTATCTGAAGACAACGGATGGGTCTT 830
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 774 GGGGAAAGCAGGGGAGGATCGTGTACACGTGGTTGTGTCTGAAGACAACGGATGGGTCTT 833
Query 831 TGTCGGAATCTATGACGGATTCAGTGGTCCAGATGCGCCGGATTATCTCCTCAACAATCT 890
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 TGTCGGAATCTATGACGGATTCAGTGGTCCAGATGCGCCGGATTATCTCCTCAACAATCT 893
Query 891 TTACACCGCCGTGCAAAAGGAGCTCAATGGGTTACTTTGGAACGACGAAAAGCTTAGATC 950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 TTACACCGCCGTGCAAAAGGAGCTCAATGGGTTACTTTGGAACGACGAAAAGCTTAGATC 953
Query 951 TTTAGGAGAAAACGGC-ATGACCAAAACCGGAAAATGTTCTGATGAGGAAGATCCCGAGT 1009
||| |||||||||||| | |||||| | |||||||||||| |||||||||||| | || |
Sbjct 954 TTTTGGAGAAAACGGCGA-GACCAAGATCGGAAAATGTTCCGATGAGGAAGATTCTGATT 1012
Query 1010 CAGGAAAAGAGAATTGTCCCGTGATAAACAATGATGATGCAGTTGCTTCCGGTGCAAGAA 1069
| || |||||||||||||| ||| | |||| ||||||| |||||||||||||||||||||
Sbjct 1013 CGGGCAAAGAGAATTGTCCTGTGGTGAACAGTGATGATCCAGTTGCTTCCGGTGCAAGAA 1072
Query 1070 ACCAAGCGAAGAGTTTGAAATGGAGATGTGAATGGGAGAAGAAGTCAAATAACAAGACCA 1129
|||||| || |||| ||||||||||||||||||||||||| |||||||| |||| |||||
Sbjct 1073 ACCAAGAGAGGAGTGTGAAATGGAGATGTGAATGGGAGAATAAGTCAAACAACAGGACCA 1132
Query 1130 AATCTGATAACAGGTGTGATCAGAAAGGATCAAATTCGACGACAACAAACCATAAAGATG 1189
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1133 AATCTGATAACAAATGTGATCAGAAAGGATCAAATTCGACGACAACAAACCATAAAGATG 1192
Query 1190 TTCTTAAAGCTCTTTTACAAGCTTTGAGGAAAACCGAAGACGCGTATTTAGAGCTAGCTG 1249
|||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1193 TTCTTAAAGCTCTTTTACTAGCGCTGAGGAAAACCGAAGACGCGTATCTAGAGCTAGCTG 1252
Query 1250 ATCAAATGGTTAAAGAGAATCCAGAGTTAGCATTGATGGGGTCTTGTGTTCTCGTGACAT 1309
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1253 ATCAAATGGTTAAAGAGAATCCAGAATTAGCATTGATGGGTTCTTGTGTTCTCGTGACAT 1312
Query 1310 TGATGAAAGGAGAAGACGTTTACGTGATGAATGTCGGGGATAGCCGAGCGGTTTTAGGCC 1369
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1313 TGATGAAAGGAGAAGATGTTTACGTGATGAATGTCGGGGATAGCCGAGCGGTTTTAGGCC 1372
Query 1370 GGAAACCTAATTTAGCAACCGGGAGAAAGAGGCAAAAAGAGTTGGAGAGAATAAGAGAAG 1429
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1373 GGAAACCTAATTTAGCCACCGGGAGAAAGAGGCAAAAGGAGTTGGAGAGAATAAGAGAAG 1432
Query 1430 ATAGTTCATTAGAAGATAAAGAAATTTTGATGAATGGAGCAATGCGTAATACTTTGGTTC 1489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1433 ATAGTTCATTAGAAGATAAAGAAATTTTGATGAATGGAGCAATGCGTAATACTTTGGTTC 1492
Query 1490 CTCTACAACTTAACATGGAACATAGCACAAGAATTGAAGAGGAAGTGAGAAGAATCAAGA 1549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1493 CTCTACAACTTAACATGGAACATAGCACAAGAATTGAAGAGGAAGTGAGAAGAATCAAGA 1552
Query 1550 AGGAACATCCTGACGATGATTGTGCCGTAGAGAATGATAGAGTTAAAGGTTATCTTAAGG 1609
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1553 AGGAACATCCTGACGATGATTGTGCAGTAGAGAATGATAGAGTTAAAGGTTATCTTAAGG 1612
Query 1610 TCACTCGTGCATTTGGAGCTGGCTTTCTCAAACAGCCTAAATGGAACGATGCCCTTTTAG 1669
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1613 TCACTCGTGCATTTGGAGCTGGCTTTCTCAAACAGCCTAAATGGAACGATGCACTTTTAG 1672
Query 1670 AGATGTTCAGGATCGATTATATCGGGACATCACCATATATTACATGTTCACCATCATTAT 1729
||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||
Sbjct 1673 AGATGTTCAGGATCGATTATATCGGGACATCACCATACATTACATGTTCTCCATCACTAT 1732
Query 1730 GTCATCACAAGCTAACGTCACGTGACAAATTCCTAATCCTATCTTCTGATGGATTGTATG 1789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1733 GTCATCACAAGCTAACGTCACGTGACAAATTCCTAATCCTATCTTCTGATGGATTGTATG 1792
Query 1790 AATATTTCTCTAACCAAGAAGCCATTTTCGAGGTTGAATCTTTCATCTCTGCTTTCCCTG 1849
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1793 AATATTTCTCTAACCAAGAAGCCATTTTCGAGGTTGAATCTTTCATCTCTGCTTTTCCTG 1852
Query 1850 AAGGCGATCCAGCTCAACACTTAATCCAAGAAGTCCTCCTTCGTGCTGCCAACAAGTTTG 1909
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1853 AAGGCGATCCAGCTCAACACTTAATCCAAGAAGTCCTCCTTCGTGCTGCCAACAAATTTG 1912
Query 1910 GTATGGATTTTCATGAATTGTTGGAGATACCGCAAGGAGATCGTAGGAGGTATCACGATG 1969
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||
Sbjct 1913 GTATGGATTTTCATGAATTGTTGGAGATACCACAAGGTGATCGTAGGAGGTATCATGATG 1972
Query 1970 ATGTCTCTGTGATAGTGATCTCTCTTGAAGGAAGAATATGGAGATCATCAATGTGA 2025
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1973 ATGTCTCTGTGATAGTGATCTCACTTGAAGGAAGAATATGGAGATCATCAATGTGA 2028
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76142399755
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5