BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G02410.1
Length=1759
Score E
Sequences producing significant alignments: (Bits) Value
Ahg349537 jgi|Araly1|349537|fgenesh1_pg.C_scaffold_6000130 2342 0.0
> Ahg349537 jgi|Araly1|349537|fgenesh1_pg.C_scaffold_6000130
Length=1482
Score = 2342 bits (1268), Expect = 0.0
Identities = 1411/1482 (95%), Gaps = 2/1482 (0%)
Strand=Plus/Plus
Query 171 ATGTCGATTATCGTCAATCACATTGTTCCTGAACCCTACATGGACGAGATATTTCATGTG 230
|||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1 ATGTCGATTATCATCAATCACATTGTCCCTGAACCGTACATGGACGAGATATTTCATGTT 60
Query 231 CCTCAAGCTCAGCAATACTGCAATGGGAATTTTAGGAGCTGGGATCCAATGATCACTACC 290
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 CCTCAGGCTCAGCAATACTGCAATGGGAATTTTAGGAGTTGGGATCCAATGATCACTACC 120
Query 291 CCACCTGGATTGTACTATCTTTCACTAGCACATGTTGCTAGTTTGTTTCCAGGAATGTTG 350
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 121 CCACCTGGATTGTACTATCTTTCACTAGCACATGTTGCTACTTTGTTTCCAGGAATGTTG 180
Query 351 TTGATGGAAAATAC-ATCTCAGTCCTTTTCAGAAGCTTGTTCGACATCTGTCCTGCGGTC 409
|||||| ||||||| | ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 181 TTGATGAAAAATACTA-CTCAGTCCTTTCCAGAAGCTTGTTCGACATCTGTCCTGCGGTC 239
Query 410 TACAAATGCTGTTTCTGCAGTATTGTGTGGTGTTTTAGTGTATGAGATAATAAGATTCTT 469
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 240 TACAAATGCTGTTTTTGCAGTATTGTGTGGTGTTTTAGTGTATGAGATAATCAGATTCTT 299
Query 470 GGGGCCGAATCTTAGTGATAGAAAAGCGACTTTTATGGCGTTAGTCATGTCGCTTTACCC 529
|||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 300 GGGGCCGAATCTCAGTGATAGAAAGGCGACTTTTATGGCCTTAGTCATGTCGCTTTACCC 359
Query 530 TCTCCATTGGTTCTTCACTTTCCTATACTATACAGATGTTGCGTCCCTAACCGCAGTTCT 589
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 360 TCTCCATTGGTTCTTCACTTTCCTCTACTATACAGATGTTGCGTCTCTAACCGCAGTTCT 419
Query 590 TGCCATGTACCTTACTTGTTTGAAAAGACGATATGTGCTCAGTGCATTGTTTGGCACTTT 649
||||||||||||| |||||||||||||| ||||| |||| ||||||||||||||||||||
Sbjct 420 TGCCATGTACCTTGCTTGTTTGAAAAGAAGATATATGCTGAGTGCATTGTTTGGCACTTT 479
Query 650 AGCAGTTTTTATCCGACAAACAAATGTAGTCTGGATGCTTTTCGTTGCTTGCTCAGGTAT 709
|||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 480 AGCAGTATCTATCCGACAAACAAATGTAGTCTGGATGCTTTTCGTTACTTGCTCAGGTGT 539
Query 710 TCTAGACTTCACCCTTGACTCGTCTAAGCAAAAAGGAAAACAAGAAGTAAATCAAGAACT 769
| |||||||||| ||||||||||||| |||||||||||||||| |||||||||||||| |
Sbjct 540 TATAGACTTCACTCTTGACTCGTCTAGGCAAAAAGGAAAACAAAAAGTAAATCAAGAATT 599
Query 770 GCATCAGTCTAGTAATAAGAAAGGAGCAACTTTGAGATCAAATCTTAGAAAAAGAAAATC 829
||||||||||||| ||| ||||||| || || | ||||||||||||||||||||||||||
Sbjct 600 GCATCAGTCTAGTGATAGGAAAGGAACATCTCTCAGATCAAATCTTAGAAAAAGAAAATC 659
Query 830 TGATATCAGCTCAGACACTTCAGACCCTTTTAACCACGGTCAAACTGTTCCTTCAACAGA 889
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 660 TGATATCAGCTCAGACACTTCAGACCGTTTTAACCACGGTCAAACTGTTTCTTCAACAGA 719
Query 890 GGATACTTCAGACTTAGTGTATGATATTTATACTGTAATCTCAACATCTTGGAATCTGAA 949
||||||||||| |||| |||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 720 GGATACTTCAGGCTTACTGTATGATGTTTATACTGTAATCTCAACATCTTGGAATATGAA 779
Query 950 GTGGAGGATTTTGATCAAGTTTAGCCCTTTTATCTTTGTTGTGGTGGCGTTTGGTATTTT 1009
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 780 GTGGAGGATTTTAATCAAGTTTAGCCCTTTTATCTTTGTTGTGGTGGCGTTTGGTATATT 839
Query 1010 TATCCTCTGGAACGGGGGTATAGTCCTCGGTGCAAAAGAGGCTCATGTAGTTTCACTGCA 1069
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 840 TATCCTCTGGAACGGGGGTATAGTTCTCGGTGCGAAAGAGGCTCATGTAGTTTCACTGCA 899
Query 1070 TTTTGCGCAGATAATGTATTTTAGTCTCGTTTCTGCTCTTTTCACTGCTCCCCTACACTT 1129
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 900 TTTTGCGCAGATAATGTATTTTAGCCTCGTTTCTGCTCTTTTCACTGCTCCCCTACACTT 959
Query 1130 CTCAGTAAATCAACTGAGACATCAGTTCCATCAGCTCCATAGAAATTGGTCATTAAGCCT 1189
||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||
Sbjct 960 CTCAGTAAATCAACTGAGAAATCAGTTCCAAAAGCTCCATAGAAATTGGCCATTAAGCCT 1019
Query 1190 TATACTAACTCTTGTGGCTCTAGTAGCCGGATTTGTCTCTGTACACTTTTTCAGCTTGGC 1249
| ||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1020 TCTACCAACTCTCGTGGCTCTGGTAGCCGGATTTGTCTCTGTACACTTTTTCAGCTTGGC 1079
Query 1250 TCATCCATATCTTCTTGCTGATAATCGCCATTATCCTTTCTACCTATGGAGAAAAATTAT 1309
||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1080 TCATCCATATCTTCTCGCCGATAATCGCCATTATCCTTTCTACCTATGGAGAAAAATAAT 1139
Query 1310 CAATGCGCATTGGTTAATGAAGTACATATTAGTCCCGGTATACGTCTATTCCTGGTTCTC 1369
||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||
Sbjct 1140 CAATGCGCATTGGTTAATGAAGTACATGTTAGTCCCGGTTTACGTCTATTCATGGTTCTC 1199
Query 1370 AATCCTAACTTTATTAGCGAAAACTCGAAGGCAGACCTGGATATTGGTCTATTTCTTAGC 1429
||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||
Sbjct 1200 AATCCTAACTTTATTAGCGAAAACTCGAAGGAAGATCTGGGTATTGGTCTATTTCTTAGC 1259
Query 1430 TACATGCGGTGTTCTTGTTCCTACTCCATTGATCGAGTTCAGATATTACACCATTCCGTT 1489
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1260 TACATGCGGTGTTCTTGTTCCCACACCATTGATCGAGTTCAGATATTACACCATTCCGTT 1319
Query 1490 TTACCTCTTCATGCTTCACTCCTGTGTCAGAAGCAGCAGCTTCGCCACTTGGCTTCTCAT 1549
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 1320 TTACCTCTTCATGCTTCACTCATGTGTCAGAAGCAGCGGCTTCGCCACTTGGCTTCTCAT 1379
Query 1550 CGGAACGATTTTTGTCTCTATCAATGTGTTTACAATGGCAATGTTCTTGTTTAGACCGTT 1609
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1380 CGGAACGATTTTTGTCTCTATTAATGTGTTTACAATGGCAATGTTCTTGTTTAGACCTTT 1439
Query 1610 TAAGTGGAGCCATGAAGATGGTGTCCAGAGGTTTATATGGTA 1651
||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 TAAGTGGAGCCATGAAGATGGTGTCCAGAGGTTTATATGGTA 1481
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66010394585
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5