BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G02420.1 Length=688 Score E Sequences producing significant alignments: (Bits) Value Ahg939617 jgi|Araly1|939617|scaffold_600161.1 643 0.0 > Ahg939617 jgi|Araly1|939617|scaffold_600161.1 Length=389 Score = 643 bits (348), Expect = 0.0 Identities = 378/392 (96%), Gaps = 3/392 (1%) Strand=Plus/Plus Query 92 tctctctGTAAAACTTGTCTAATGGCAGAGATCTGCTGCGTCAAAGAGATCCAAGAAGAA 151 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TCTCTCTCTAAAACTTGTCTAATGGCAGAGATCTGCTGCGTCAAAGAGATCCAAGAAGAA 60 Query 152 GACGTGGAGAAGATCCGATTACCGACCCGACCCGAATTAGACATTCCTGACTCTGATCAC 211 ||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||| Sbjct 61 GACGTAGAGAAGATCCGATTACCGACCCGACCCGAATTAGACATCCCTGACCCTGATCAC 120 Query 212 GAAGATCCAACGGTCAACGAAGAAGAAGGGTGCAAGACTCCAACATCGTCCGATCACAAG 271 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 121 GAAGATCCAACGGTCAACGAAGAAGATGGGTGCAAGACTCCAACATCGTCCGATCACAAG 180 Query 272 ATTCCGGAGGTGAAGTATACGTTATGTCCACCGGCTCCGAGAAAACCAAAACCGAATCGA 331 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 181 ATTCCGGAGGTGAAGTATACGTTATGTCCACCGGCTCCGAGAAAACCGAAACCGAACCGG 240 Query 332 TCTTCCGGTACGAAACGGAAATTAACGCCGGTTAATGTTGTTAACCGCATACCGATTGAT 391 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 241 TCTTCCGGTACGAAACGGAAATTAACGCCGGTTAATGTTGTTAACCGTATACCGATTGAT 300 Query 392 CTGAGCCGTGAGATCGAGATGTTCTTCGAGGATTTGGACCGTAGGATCAAGAAGTCACGG 451 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 301 CTGAGCCGTGAGATCGAGATGTTCTTCGAGGATTTGGACCGTAGGATCAAGAAGTCCCGG 360 Query 452 AAACAATAAGAAGATTATTGCCTTAATTGGTA 483 ||||||||||| ||||||| |||||||||| Sbjct 361 AAACAATAAGA---TTATTGCTTTAATTGGTA 389 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25275493971 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5