BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G02420.1

Length=688
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg939617 jgi|Araly1|939617|scaffold_600161.1                        643    0.0  


> Ahg939617 jgi|Araly1|939617|scaffold_600161.1
Length=389

 Score =  643 bits (348),  Expect = 0.0
 Identities = 378/392 (96%), Gaps = 3/392 (1%)
 Strand=Plus/Plus

Query  92   tctctctGTAAAACTTGTCTAATGGCAGAGATCTGCTGCGTCAAAGAGATCCAAGAAGAA  151
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    TCTCTCTCTAAAACTTGTCTAATGGCAGAGATCTGCTGCGTCAAAGAGATCCAAGAAGAA  60

Query  152  GACGTGGAGAAGATCCGATTACCGACCCGACCCGAATTAGACATTCCTGACTCTGATCAC  211
            ||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct  61   GACGTAGAGAAGATCCGATTACCGACCCGACCCGAATTAGACATCCCTGACCCTGATCAC  120

Query  212  GAAGATCCAACGGTCAACGAAGAAGAAGGGTGCAAGACTCCAACATCGTCCGATCACAAG  271
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  121  GAAGATCCAACGGTCAACGAAGAAGATGGGTGCAAGACTCCAACATCGTCCGATCACAAG  180

Query  272  ATTCCGGAGGTGAAGTATACGTTATGTCCACCGGCTCCGAGAAAACCAAAACCGAATCGA  331
            ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || 
Sbjct  181  ATTCCGGAGGTGAAGTATACGTTATGTCCACCGGCTCCGAGAAAACCGAAACCGAACCGG  240

Query  332  TCTTCCGGTACGAAACGGAAATTAACGCCGGTTAATGTTGTTAACCGCATACCGATTGAT  391
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  241  TCTTCCGGTACGAAACGGAAATTAACGCCGGTTAATGTTGTTAACCGTATACCGATTGAT  300

Query  392  CTGAGCCGTGAGATCGAGATGTTCTTCGAGGATTTGGACCGTAGGATCAAGAAGTCACGG  451
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  301  CTGAGCCGTGAGATCGAGATGTTCTTCGAGGATTTGGACCGTAGGATCAAGAAGTCCCGG  360

Query  452  AAACAATAAGAAGATTATTGCCTTAATTGGTA  483
            |||||||||||   ||||||| ||||||||||
Sbjct  361  AAACAATAAGA---TTATTGCTTTAATTGGTA  389



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25275493971


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5