BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G02430.1
Length=2718
Score E
Sequences producing significant alignments: (Bits) Value
Ahg349540 jgi|Araly1|349540|fgenesh1_pg.C_scaffold_6000133 4407 0.0
Ahg345530 jgi|Araly1|345530|fgenesh1_pg.C_scaffold_4001872 525 6e-148
Ahg359776 jgi|Araly1|359776|fgenesh1_pg.C_scaffold_964000001 296 5e-79
> Ahg349540 jgi|Araly1|349540|fgenesh1_pg.C_scaffold_6000133
Length=2721
Score = 4407 bits (2386), Expect = 0.0
Identities = 2615/2726 (96%), Gaps = 13/2726 (0%)
Strand=Plus/Plus
Query 1 ATGGCGAATCGAGGCGGCGAAAACGGGAAATTGGATCGGAAGAAGACGATGACGATGAAT 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGGCGAATCGAGGCGGCGAAAACGGGAAATTGGAACGGAAGAAGACGATGACGATGAAT 60
Query 61 TGGGCGGGGTTAGGCGAGTTTGAAGACGACGACGATCATTTTTTCGATAGCTCTAATCGT 120
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TGGGCGGGGTTAGGCGAGGTTGAAGACGACGACGATCATTTTTTCGATAGCTCTAATCGA 120
Query 121 ATCTCCACCGTCGTACCTTCGGATTTAGCATCATCTTCTGACGAAGAAGAAGGTGAGTTT 180
||||||||||| || |||| |||||||||||||||||| || || |||||||||||||||
Sbjct 121 ATCTCCACCGTTGTGCCTTTGGATTTAGCATCATCTTCAGATGAGGAAGAAGGTGAGTTT 180
Query 181 GATGATTGCCGGATCTCGTTTTCTTCTAATGTGTCGTCCTCCTCTCGCGCTGCTCCTGCG 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 181 GATGATTGCCGGATCTCGTTTTCTTCTAATGTATCGTCCTCCTCTCGCGCTGCTCCTGCG 240
Query 241 CCGGATATGTCGCCGGATTATGATATTTGGATGTCGGCGCCGGGATCTATCACGGAGCGT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CCGGATATGTCGCCGGATTATGATATTTGGATGTCGGCGCCGGGATCTATCACGGAGCGT 300
Query 301 CGTCGAAGGCTTCTTAATGGAATGGGACTTGAATCTAAGAAGACTAGGCTCGGAGCTATC 360
||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 301 CGTCGTCGGCTTCTTAATGGAATGGGACTTGAATCTAAGAAGACTATGCTTGGAGCTATC 360
Query 361 TCGATTCAACGCGTGAGTGAACCTGTGGCGGCGACGGGTGAGTGCTCAGGTTCTCGCGTT 420
||||||||||||||||||||||||||||||| | |||||| |||||| ||||||||||||
Sbjct 361 TCGATTCAACGCGTGAGTGAACCTGTGGCGGTGGCGGGTGTGTGCTCTGGTTCTCGCGTT 420
Query 421 GCGGAAGTGAAGGTGGAGGAGTCAGATCACAATTCTCCGGTGAATCAAAGAGTTCGTCGA 480
||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 421 GCGGAAGCGAAGGTGGAGGAGTCAGATCACAATTCTCCGGTGAATCAACGAGTTCATCGA 480
Query 481 TCTCCGTCGATGTCGGTTTTGCTTGTACGGTCTAGATCTGATTCCGATATCGAAGCGTCT 540
||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 481 TCTTCATCGATGTCGGTTTTGCTTGTACGGTCTAGATCTGATTCTGATATCGAAGCGTCT 540
Query 541 TCTGCTGAGAAACAGAGGAAAGAAGAGATGTTAGGGAAAACGTCGAAATCGCGATTGACT 600
|||||||||||| ||||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct 541 TCTGCTGAGAAAAAGAGGAAGGAAGAGATGTTAGGGAAAACTTCGAAATCGCGATTAACT 600
Query 601 AGAACCGCGTCTGCGATTGGAGCTCCGTGTGCGAGGATTTGTCCCTACTTCACCCAAACG 660
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 601 AGAACCGCGTCTGCGATTGGAGCTCCGTGTGCGAGAATTTGTCCCTACTTCACCCAAACG 660
Query 661 CAAGCCTCGCCGCCGGACGCACCAAACGGTCATCATCAGTCTCAAGGCCAACGTAGTGGT 720
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 661 CAAGCCTCGCCGCCGGACGCACCAAACGG---TCATCAGTCTCAAGGCCAACGTAGTGGT 717
Query 721 CCGTTGCTCTCTTCGGTAGTTTCCAATACTCGTTTTAGTGCTTTTTTCTTGATTAAGAAC 780
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 718 GCGTTGCTCTCTTCGGTAGTTTCCAATACTCGTTTTAGTGCTTTTTTCTTGATCAAGAAT 777
Query 781 CTTGACACTGGGAAAGAGTTCATTGTGAAGGAGTATGGTGAGAATGGAATGTGGAATCGG 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 CTTGACACTGGGAAAGAGTTCATTGTGAAGGAGTATGGTGAGAATGGAATGTGGAATCGG 837
Query 841 CTTAGCGATTTGCAAACTGGTAAGCAATTGACAATGGAAGAATTTGAGAAGAGTGTTGGT 900
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 838 CTTAGTGATTTGCAAACTGGTAAGCAATTGACAATGGAAGAATTTGAGAAAAGTGTTGGC 897
Query 901 TATTCATCTGTTGTTAAGGATCTTATGAGAAGAGAGAACGCGAATTCGACGATGGATTTT 960
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 898 TATTCATCTGTTGTTAAGGATCTTATGAGACGAGAGAACGCGAATTCGACGATAGATTTT 957
Query 961 AGGAAATTTAACTCGTATGTGTCAAAGAGTTTGAGAGTAAGTAAGAAGAGAGGAGCTGCT 1020
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 AGGAAATTCAATTCGTATGTGTCAAAGAGTTTGAGAGTAAGTAAGAAGAGAGGAGCTGCT 1017
Query 1021 TTGTTAAAGAACATAAAGGACGTTGCTCATTCTATGAGCTCTTCTAAGGTTTCAGAGAAA 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 TTGTTAAAGAACATAAAGGACGTTGCTCATTCTATGAGCTCTTCTAAGGTTTCAGAGAAA 1077
Query 1081 GAGAAGGATTCAACTGGTAGTGGCACAAGTAGTCCAAAAGTAGCGGAGAAGAACAATGAG 1140
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 1078 GAGAAGGATTCAACTGGTAGTGGTACAAGTAGTCCAAAAGTAGTGGAGAAGAACAATGAG 1137
Query 1141 CAGGCGAATCAATGGGTGAAAGTGAGGCATTCAGGGAAGTCTCATAAAGATTTAAGTGCT 1200
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 CAGGCAAATCAATGGGTGAAAGTGAGGCATTCAGGGAAGTCTCATAAAGATTTAAGTGCT 1197
Query 1201 TTGCATATGTGTCAAGAGATTCAAGCTCATCAAGGAGGTATTTGGACTATGAAATTTAGT 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 TTGCATATGTGTCAAGAGATTCAAGCTCATCAAGGAGGTATTTGGACTATGAAATTTAGT 1257
Query 1261 CCAGATTCACATTTATTAGCAAGTGCAGGGGAGGATTGTGCAATCCATGTGTGGGAGGTT 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 CCAGATTCACATTTATTAGCAAGTGCAGGGGAGGATTGTGCAATCCATGTGTGGGAGGTT 1317
Query 1321 CAAGAATGTGAAATCATGTCAATGAATGAAGGGAGCTTGACACCTATTCATCCTTCAATG 1380
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 1318 CAAGAATGTGAAATCATGTCAATGAGTGAAGGGAGCTTGACACCGATTCATCCTTCAATG 1377
Query 1381 TCTGGTTCCACAGATAAATCGTC---GGAAGGTGATGCTGCAGAAGTGTCACAAGATAAG 1437
||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 1378 TCTGGTTCCACGGATAAATCGTCTACGGAAGGTGATGCTGCAGAAGTGTCACAGGATAAG 1437
Query 1438 AAGAAGAAAGGGAAAACTTCAATGAGTAAAAAAGGAAACCAGATACCAGATTATGTCCAC 1497
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1438 AAGAAAAAAGGGAAAACTTCAACGAGTAAAAAAGGAAACCAGATACCAGATTATGTCCAC 1497
Query 1498 GCGCCTGAAACTGTGTTCTCCTTGTCAGATAAACCAATTTGCTCTTTCACTGGTCACTTG 1557
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1498 GCGCCTGAAACTGTGTTCTCATTGTCAGATAAACCAATTTGCTCTTTCACTGGTCACTTG 1557
Query 1558 GATGATGTTCTGGACTTATCTTGGTCTCGGTCACAGCTATTGCTTTCATCTTCCATGGAC 1617
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1558 GATGATGTTCTGGACTTATCCTGGTCTCGGTCACAGCTATTGCTTTCATCTTCCATGGAC 1617
Query 1618 AAAACTGTGCGGTTGTGGGATATTGAAACTCAAAGTTGTCTAAAACTATTTGCCCACAAT 1677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1618 AAAACTGTGCGGTTGTGGGATATTGAAACTCAAAGTTGTCTAAAACTATTTGCCCACAAT 1677
Query 1678 GACTATGTTACTTGTGTACAATTCAATCCATTGGATGAAGATTACTTCATTAGTGGCTCC 1737
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 1678 GACTATGTTACTTGTGTACAATTCAATCCACTGGATGAAGATTACTTCATCAGTGGCTCC 1737
Query 1738 CTTGATGCCAAGATCCGTATATGGAACATATCAAACCGTCAAGTAGTTGAGTGGAATGAT 1797
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1738 CTTGATGCCAAGATCCGTATATGGAACATATCAAACCGTCAAGTCGTTGAGTGGAATGAT 1797
Query 1798 CTAAAGGAAATGGTTACCGCGGTTTGTTATACTCCTGATGGTCAGGCTGCATTTGTTGGT 1857
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1798 CTAAAGGAAATGGTTACCGCGGTTTGTTATACTCCTGATGGTCAGGCTGCATTTGTTGGT 1857
Query 1858 TCAATTAATGGGCATTGCCGGCTTTACAGTGCAGAGGATTGCAAGTTGGAACAAACAAAC 1917
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1858 TCAATTAATGGGAATTGCCGGCTTTACAGTGCAGAGGATTGCAAGTTGGAACAAACAAAC 1917
Query 1918 CAGATAGATCTGCAGAACAAAAAGAAGGCTCAAGCTAAAAAGATCACAGCTTTTCAGTTT 1977
|||||||||||||| ||||||||||| ||||||||||||||||||||||| || ||||||
Sbjct 1918 CAGATAGATCTGCAAAACAAAAAGAAAGCTCAAGCTAAAAAGATCACAGCCTTCCAGTTT 1977
Query 1978 TCGCCAATTAATCCATCAGAAGTGCTTGTAACTTCTGCTGATTCACGCATTCGGGTTCTT 2037
|| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 1978 TCTCCAATTAATCCATCAGAAGTGCTTGTAACTTCCGCTGATTCACGCATTCGGATTCTC 2037
Query 2038 GACGGTACTGAACTTGTTCAAAAATTCAGAGGCTTCAAAAACATGAACAGCCAAATGACA 2097
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2038 GACGGTACTGAACTTGTTCAAAAATTCAGAGGCTTCAAAAACATTAACAGCCAAATGACA 2097
Query 2098 GCATCTTACACAGTAGATGCTAAGCACATTGTCTGCGCTAGCGAAGACTCACAGGTTTAC 2157
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 2098 GCATCTTACACAGTAGATGCTAAGCACATTGTCTGTGCAAGCGAAGACTCACAGGTTTAC 2157
Query 2158 GTGTGGAAACACGAGGAGCCACGACTAGGTATCACCGGTAGAAAAACAGTCACCATGTGT 2217
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 2158 GTGTGGAAACACGAGGAGCCACGACTAGGAATCACCGGTAGAAAAACCGTCACCATGTGT 2217
Query 2218 ACTTCTTATGAAACCTTCCCGTGCAAAGATGTTTCCGTGGCAGTCCCATGGAACGGCGTT 2277
|||||||| ||||| |||||||||||||||||||| |||||| |||| ||||||||||||
Sbjct 2218 ACTTCTTACGAAACATTCCCGTGCAAAGATGTTTCAGTGGCAATCCCGTGGAACGGCGTT 2277
Query 2278 GTAAAAGGTGAACCACCATCCACACAACAC-CAATCGAAAAGAAACCCGAA-AAAACCAT 2335
|||||||| |||||||||||||||||| || || || ||||||||||| || ||||| |
Sbjct 2278 GTAAAAGGCGAACCACCATCCACACAA-ACTCAGTCTAAAAGAAACCCAAAGAAAACT-T 2335
Query 2336 CAACTACTACTAC---TACCCCTGAAAACACGACCACGGGTAAAAAATCAGGCCTCCCAC 2392
||||||||||||| |||||| |||||| |||||||| |||||||||||||||||||||
Sbjct 2336 CAACTACTACTACAACTACCCCGGAAAACGCGACCACGAGTAAAAAATCAGGCCTCCCAC 2395
Query 2393 CATTACCTAAGAAAAACAATGACGGCACCGCGGATGGAGCAACAGAACAACATCAAGAAG 2452
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
Sbjct 2396 CATTACCTAAGAAAAACAATGACGGCACTGCAGATGGAGCAACAGAACAACATCAAGATG 2455
Query 2453 ATGATCCAGCTACGCATATTTCGCATAACGAATCAGAGAACAACACAGGCGAGTCAATAA 2512
||||||| || ||||| ||| |||| ||||||||||||||||||||||| |||||| |||
Sbjct 2456 ATGATCCCGCAACGCAGATTCCGCAAAACGAATCAGAGAACAACACAGGAGAGTCATTAA 2515
Query 2513 AGCATGGGGATTCACCTTCTATATCAATCTCCTCTCGGATTTCTTCTTGGTCGTGGTTTG 2572
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2516 AGCATGGGGATTCACCTTCTATATCAATCTCCTCTCGGATTTCTTCTTGGTCTTGGTTTG 2575
Query 2573 ATAGTAGTGGCAGTCATGGAACACATTCAGTTCAGCCAACAGCTTGGGGAATGGTGATTG 2632
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2576 ATAGTAGTGGCAGTCATGGAACACATTCAGTTCAGCCAACAGCTTGGGGAATGGTGATCG 2635
Query 2633 TTACAGCCACAATCAAGGGCCAAATCCGAACTTACCAAAATTTTGGATTACCACGCAGGG 2692
|||||||||| |||||||||||||||||| ||||||||||||| ||||| || |||||||
Sbjct 2636 TTACAGCCACGATCAAGGGCCAAATCCGAGCTTACCAAAATTTCGGATTGCCCCGCAGGG 2695
Query 2693 TCGGTCGTCAAGGCTCTCTGTTTTGA 2718
| ||||||||||||||||||||||||
Sbjct 2696 TTGGTCGTCAAGGCTCTCTGTTTTGA 2721
> Ahg345530 jgi|Araly1|345530|fgenesh1_pg.C_scaffold_4001872
Length=2736
Score = 525 bits (284), Expect = 6e-148
Identities = 1093/1465 (75%), Gaps = 130/1465 (9%)
Strand=Plus/Plus
Query 763 TTTTTCTTGATTAAGAACCTTGACACTGGGAAAGAGTTCATTGTGAAGGAGTATGGTG-A 821
||||||||||||||||| ||||| || ||||||||||| || ||||| ||||||| || |
Sbjct 757 TTTTTCTTGATTAAGAATCTTGATACAGGGAAAGAGTTTATAGTGAATGAGTATGATGAA 816
Query 822 GAATGGAATGTGGAATCGGCTTAGCGATTTGCAAACTGGTAAGCAATTGACAATGGAAGA 881
| |||||||||||||| ||||||| ||||||||||| || |||||||| || |||| ||
Sbjct 817 G-ATGGAATGTGGAATAGGCTTAGTGATTTGCAAACAGGGAAGCAATTAACTTTGGAGGA 875
Query 882 ATTTGAGAAGA-GTGTTGGTTATTCATCTGTTGTTAAGGATCTTATGAGAAGAGAGAACG 940
||||||||| | |||||||||||||| |||| ||||| || |||||| | |||||||| |
Sbjct 876 ATTTGAGAA-ATGTGTTGGTTATTCACCTGTGGTTAAAGAGCTTATGCGTAGAGAGAATG 934
Query 941 CG---A--A-T---T-CG-A-CG---ATGGATTTTAGGAAATTTAACTCGTATGTGTC-A 984
| | | | | || | || |||||| || |||| ||||| |||||| | || |
Sbjct 935 TGAATAGGATTAACTACGAACCGTTAATGGATCTTCGGAAGTTTAATTCGTATCTTTCGA 994
Query 985 AAGAGTTTGAGAG-TAAGTAAGAAG-AGAGGAGCTGCTTTGTTAAAGAACAT-AAAGGAC 1041
|| || |||| | |||||||| || || || ||||| ||||| |||||||| |||||
Sbjct 995 AA-AGCGTGAG-GTTAAGTAAG-AGAAGGGGTGCTGCATTGTTGAAGAACATAAAAGG-T 1050
Query 1042 GTTGCTCATTCTATGAGCTCTTCTA-AGGTTTCAGAGA-AAGAGAAGGATTCAACTGGTA 1099
|| |||||||| ||||| || || |||| | | || || ||| | | | | ||| |
Sbjct 1051 GTAGCTCATTCCATGAG---TT-TACGGGTTGC-G-GATAA-AGATGTAAGCGA-TGG-A 1101
Query 1100 GTGGCA-CAAGTAGTCC-AAAAGTAGCGGAGAAGAACAATGAGCA--G----GCGAATCA 1151
||| | | |||||| |||| || ||| |||| | || |||| | || ||| |
Sbjct 1102 --AGCACCGA-TAGTCCGAAAA--AGGGGA-AAGATC-ATAAGCATGGTAAAGCTAATGA 1154
Query 1152 ATGGGTGAAAGTGAG-GCATTCAGGGAAGTCTCATAAAGATTTAAGTGCTTTGCATATGT 1210
||||||||||| || || ||||||| ||| | || || |||||||||||||||||||
Sbjct 1155 GTGGGTGAAAGTTAGACCA-ACAGGGAAATCTTACAAGGAATTAAGTGCTTTGCATATGT 1213
Query 1211 GTCAAGAGATTCAAGCTCATCAAGGAG-GTATTTGGACTATGAAATTTAGTCCAGATTCA 1269
|||||||||||||||||||| | || | | |||||||||| |||||||||| |||| |
Sbjct 1214 GTCAAGAGATTCAAGCTCATGAGGGTGCGG-TTTGGACTATCAAATTTAGTCAAGATGCT 1272
Query 1270 CATTTAT-TAGCAAGTGCAGGGGAGGATTGTG-CAATCCATGTGTGGGAGGTTCAAGAAT 1327
|||| || |||| || | ||| | |||| | | || || |||| ||||||||||||||||
Sbjct 1273 CATT-ATCTAGCGAGCGGAGGAGCGGATAGAGTCATTC-ATGTATGGGAGGTTCAAGAAT 1330
Query 1328 GTGAAATCATGTCAATGAATGAAGGGAG-CTTGACACCTATTCATCCTTCAATGTCTGGT 1386
||||| | ||||| |||||||||||||| || || ||||||||||||||| | | || |
Sbjct 1331 GTGAACTAATGTCTATGAATGAAGGGAGTCTC-ACTCCTATTCATCCTTCACT-T-TG-T 1386
Query 1387 TCCACAGATAAATCGTCGGAAGGTGATGCTGCAGAAGTGTCACAAGATAAGAAGAAG-AA 1445
| | | | | |||| ||| | | | | ||| | || ||||| ||| ||
Sbjct 1387 GACTCTG------C-T-GGAAA-TGA-GAT--A-AC-TGTGGTA-GAGAAGAA-AAGGAA 1430
Query 1446 AGGGAAAA--CTTCAAT-GAGTAAAAAAGGAAACCAG-ATA--CCAGATTATGTCCACGC 1499
||| |||| || | | | | || | | |||| | ||| || ||||| ||||| |
Sbjct 1431 AGG-AAAAGGCT-CT-TCGGG-AAGAC-G-AAACAATCATATTCCGGATTACGTCCATGT 1484
Query 1500 GCCTGAAACTGTGTTCTCCTTGTCAGATAAACCAATTTGCTCTTTCACTGGTCACTTGGA 1559
|||||||| || |||||||| || ||||| || |||||||||| | ||||| |||||
Sbjct 1485 TCCTGAAACCGTCTTCTCCTTTTCTGATAAGCCTGTTTGCTCTTTGAAAGGTCATTTGGA 1544
Query 1560 TGATGTTCTGGA-CTTATCTTGGTCTCGG-TCACAGCTA-TTGCTTTCATCTTCCATGGA 1616
|| | || |||| || || ||||| | || ||||| || |||||||||||||||||
Sbjct 1545 TGCTATTTTGGATCTG-TCATGGTC-CAAATCTCAGCTTCTT-CTTTCATCTTCCATGGA 1601
Query 1617 CAAAACTGTGC-GGTTGTGGGATATTGAAACTCAAAGT-TGTCTAAAACTATTTGCCCAC 1674
|||||| || | |||| |||||| | ||||| |||| ||||| ||| | ||||| ||
Sbjct 1602 CAAAACAGT-CAGGTTATGGGATCTAGAAAC-CAAAACATGTCTCAAATTGTTTGCTCAT 1659
Query 1675 AATGACTATGTTACTTGTGTACAATTCAATCCATTGGATGAAGATTACTTCATTA-GTGG 1733
|||||||| || || ||| | || || | ||| |||||||| |||| ||| ||| ||||
Sbjct 1660 AATGACTACGTGACATGTATCCAGTTTAGCCCAGTGGATGAAAATTATTTC-TTAAGTGG 1718
Query 1734 CTCCCTTGATGCCAAGATCCGTATATGGAACATATCAA-ACCGTCAAGTAGTTGAGTGGA 1792
|| ||||| || ||||| | ||||||| |||| ||| | || || || || || ||||
Sbjct 1719 TTCACTTGACGCTAAGATAAGGATATGGAGCATA-CAAGATCGACATGTTGTGGAATGGA 1777
Query 1793 ATGATCTAAAGGAAATGGTTACCGCGGTTTGTTATACTCCTGATGGTCAGGCTGCATTTG 1852
|||||| | ||||||||||| || | ||| || ||||| || ||||||| |||| ||
Sbjct 1778 GTGATCTTCATGAAATGGTTACTGCTGCTTGCTACACTCCAGACGGTCAGGGTGCACTTA 1837
Query 1853 TTGGTTCA-ATTAATGGGCATT-GCCG-GCTTTAC-AGTGCAGAGGATTGCAAGTTGGAA 1908
| |||||| || || || ||| | || |||| || | | |||| ||||| ||| || |
Sbjct 1838 TCGGTTCACATAAA-GGA-ATTTGTCGTGCTT-ACGA-TACAGAAGATTGTAAGCTG-AG 1892
Query 1909 C-AAACAAACCAGATAGATCTGCAGAACAAAAAGAAGGCTCAAGCTAAAA--A-GATCAC 1964
| |||| | ||||| ||| | |||| ||| ||||| | ||||| |||| | ||||||
Sbjct 1893 CCAAACTAGTCAGATTGATGTTCAGAGCAATAAGAAATCGCAAGCGAAAAGGAAGATCAC 1952
Query 1965 -AGCTTTTCAGTTTTCGCCAATTAATCCATCAGAAGTGCTTGTAACTTCTGCTGATTCAC 2023
|| |||||||||||| || | |||||||| ||||| ||||| || || ||||||||||
Sbjct 1953 TAG-TTTTCAGTTTTCCCCGGTGAATCCATCCGAAGTTCTTGTCACATCCGCTGATTCAC 2011
Query 2024 GCATTCGGGTTCTT-GACGGTACTGAACTTGTTCAAAAATTCAGAGGCTTCAAAAACATG 2082
| ||||| | || |||||| ||||| || |||| ||||||| |||||| | ||||| |
Sbjct 2012 GGATTCGAATA-TTAGACGGTTCTGAAGTTATTCACAAATTCAAAGGCTTTAGAAACACG 2070
Query 2083 AACAGCCAAATGACAGCATCTTACA-C-AGTAGATGCTAAGCACATTGTCTGCGCTAGCG 2140
|||||| | | || || || | | | ||||| || |||| | || || || |
Sbjct 2071 TGTAGCCAACTCTCTGCTTCCTATAGCCA--AGATGGGAAATACATAATATGTGCAAGTG 2128
Query 2141 AAGACTCACAGGTTTACGTGTGGAA 2165
||||||| ||||||||| | |||||
Sbjct 2129 AAGACTCTCAGGTTTACTTATGGAA 2153
> Ahg359776 jgi|Araly1|359776|fgenesh1_pg.C_scaffold_964000001
Length=1200
Score = 296 bits (160), Expect = 5e-79
Identities = 683/923 (74%), Gaps = 86/923 (9%)
Strand=Plus/Plus
Query 952 ATGGATTTTAGGAAATTTAACTCGTATGTGTC-AAAGAGTTTGAGAG-TAAGTAAGAAG- 1008
|||||| || |||| ||||| |||||| | || ||| || |||| | | |||||| ||
Sbjct 1 ATGGATCTTCGGAAGTTTAATTCGTATCTTTCGAAA-AGCGTGAG-GTTGAGTAAG-AGA 57
Query 1009 AGAGGAGCTGCTTTGTTAAAGAACATAAAGGACGTTGCTCATTCTATGAGCTCTTCTA-A 1067
||||||||||| ||||| |||||||| |||| || |||||||| ||||| || ||
Sbjct 58 AGAGGAGCTGCATTGTTGAAGAACATTAAGGGTGTAGCTCATTCCATGAG---TT-TACG 113
Query 1068 GGTTTCAGAGA-AAGAGAAGGATTCAACTGGTAGTGGCA-CAAGTAGTCC-AAAAGTAGC 1124
|||| | | || || ||| | | | | ||| | ||| | | |||||| |||| ||
Sbjct 114 GGTTGC-G-GATAA-AGATGTAAGCGA-TGG-A--AGCACCGA-TAGTCCGAAAA--AGG 163
Query 1125 GGAGAAGAACAATGAGCA--G----GCGAATCAATGGGTGAAAGTGAG-GCATTCAGGGA 1177
||| |||| | || |||| | || ||| | ||||||||||| || || ||||||
Sbjct 164 GGA-AAGATC-ATAAGCATGGTAAAGCTAATGAGTGGGTGAAAGTTAGACCA-ACAGGGA 220
Query 1178 AGTCTCATAAAGATTTAAGTGCTTTGCATATGTGTCAAGAGATTCAAGCTCATCAAGGA- 1236
| ||| | || || |||||||||||||||||||||||||||||||||||||| | |||
Sbjct 221 AATCTTACAAGGAATTAAGTGCTTTGCATATGTGTCAAGAGATTCAAGCTCA-CGAGGGT 279
Query 1237 G-GTATTTGGACTATGAAATTTAGTCCAGATTCACATTTAT-TAGCAAGTGCAGGGGAGG 1294
| | |||||||||| || ||||||| |||| | |||| || |||| || | ||| | ||
Sbjct 280 GCGG-TTTGGACTATTAAGTTTAGTCAAGATGCTCATT-ATCTAGCGAGCGGAGGAGCGG 337
Query 1295 ATTGTG-CAATCCATGTGTGGGAGGTTCAAGAATGTGAAATCATGTCAATGAATGAAGGG 1353
|| | | || || |||| ||||||||||||||||||||| | ||||| ||||||||||||
Sbjct 338 ATAGAGTCATTC-ATGTATGGGAGGTTCAAGAATGTGAACTAATGTCTATGAATGAAGGG 396
Query 1354 AG-CTTGACACCTATTCATCCTTCAATGTCTGGTTCCACAGATAAATCGTCGGAAGGTGA 1412
|| || || ||||||||||||||| | | || | | | | | | |||| |||
Sbjct 397 AGTCTC-ACTCCTATTCATCCTTCACT-T-TG-TGACTCTG------C-T-GGAAA-TGA 443
Query 1413 TGCTGCAGAAGTGTCACAAGATAAGAAGAAG-AAAGGGAAAA--CT--TCAATGAGTAAA 1467
| | | | ||| | || ||||| ||| ||||| |||| || || ||| |
Sbjct 444 -GAT--A-AC-TGTGGTA-GAGAAGAA-AAGGAAAGG-AAAAGGCTCATCGGGGAGGCGA 495
Query 1468 AAAGGAAACCAGATACCAGATTATGTCCACGCGCCTGAAACTGTGTTCTCCTTGTCAGAT 1527
|| || | | || || ||||| || || | |||||||| || |||||||| || |||
Sbjct 496 AAC--AATC-ATATTCCGGATTACGTACATGTTCCTGAAACCGTCTTCTCCTTTTCTGAT 552
Query 1528 AAACCAATTTGCTCTTTCACTGGTCACTTGGATGATGTTCTGGA-CTTATCTTGGTCTCG 1586
|| || |||||||||| | ||||| ||||||| | || |||| || || ||||| |
Sbjct 553 AAGCCTGTTTGCTCTTTGAAAGGTCATTTGGATGCTATTTTGGATCTG-TCATGGTC-CA 610
Query 1587 G-TCACAGCTA-TTGCTTTCATCTTCCATGGACAAAACTGTGC-GGTTGTGGGATATTGA 1643
|| ||||| || ||||||||||||||||||||||| || | |||| |||||| | ||
Sbjct 611 AATCTCAGCTTCTT-CTTTCATCTTCCATGGACAAAACAGT-CAGGTTATGGGATCTAGA 668
Query 1644 AACTCAAAGT-TGTCTAAAACTATTTGCCCACAATGACTATGTTACTTGTGTACAATTCA 1702
||| |||| ||||| ||||| |||||||| ||||||||||| || ||| | || || |
Sbjct 669 AAC-CAAAACATGTCTCAAACTGTTTGCCCATAATGACTATGTGACATGTATCCAGTTTA 727
Query 1703 ATCCATTGGATGAAGATTACTTCATTA-GTGGCTCCCTTGATGCCAAGATCCGTATATGG 1761
||| |||||||| |||| ||| ||| |||| || ||||| || ||||| | ||||||
Sbjct 728 GCCCAGTGGATGAAAATTATTTC-TTAAGTGGTTCACTTGACGCTAAGATAAGGATATGG 786
Query 1762 AACATATCAA-ACCGTCAAGTAGTTGAGTGGAATGATCTAAAGGAAATGGTTACCGCGGT 1820
| |||| ||| | || || || || || |||| |||||| | ||||||||||| || |
Sbjct 787 AGCATA-CAAGATCGACATGTTGTGGAATGGAGTGATCTTCATGAAATGGTTACTGCTGC 845
Query 1821 TTGTTATACTCCTGATGGTCAGG 1843
||| || ||||| || |||||||
Sbjct 846 TTGCTACACTCCAGACGGTCAGG 868
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102538939540
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5