BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G02440.1
Length=782
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487020 jgi|Araly1|487020|fgenesh2_kg.6__154__AT5G02440.1 837 0.0
> Ahg487020 jgi|Araly1|487020|fgenesh2_kg.6__154__AT5G02440.1
Length=708
Score = 837 bits (453), Expect = 0.0
Identities = 610/679 (90%), Gaps = 38/679 (6%)
Strand=Plus/Plus
Query 8 TCTCTCTCTCCCTTTGAGTCTCAAAGCTTCAATGGCTCACCAGGAGGAAGGATGGCCATT 67
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1 TCTCTCTCTCCCTTTGAGTCTCAAAACTTCAATGGCTCACCAGGAGGAAGGATGGCCATT 60
Query 68 GGGTCTGAGACCAGTAAATGCAAGAATCGGAGGACTCACAAGAGGAACtcatcatcatca 127
||||||||| ||||||||||||||||||||||||||||||||||| | | |||
Sbjct 61 GGGTCTGAGGCCAGTAAATGCAAGAATCGGAGGACTCACAAGAGG--------AGC-TCA 111
Query 128 tcatcatGAACAAGtctctgctggttcaatctccttcagctctcttc-tctctccttctc 186
|||||||||||||||||| ||||||||||||||||||| ||||| || | ||||||||||
Sbjct 112 TCATCATGAACAAGTCTCGGCTGGTTCAATCTCCTTCACCTCTC-TCTTGTCTCCTTCTC 170
Query 187 cctcatctcaatcttcctccgatcttgattctcaGTCGATGGGATCATTTTTCCGCGATA 246
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 171 CCTCATCTCACTCTTCCTCCGATCTTGATTCTCAGTCGATGGAATCATTTTTCCGCGATA 230
Query 247 GGAGCTACACACTAGGAAACCTAATCGGGATATCAAGCTTTCTAGAACTTTCAAGAAGAT 306
|||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 231 GGAGCTACACCCTAGGAAATCTAATCGGGATATCAAGCTTTCTTGAACTTTCAAGAAGAT 290
Query 307 CAAACCGAACAAGGAATGATCAAACAGGCGCTGCTAGAAACCATCAACACCATAAGAATC 366
||||||||||||||||||||| || | | |||||||||||||||||||||| |||||||
Sbjct 291 CAAACCGAACAAGGAATGATC-AA-A-GTACTGCTAGAAACCATCAACACCAGAAGAATC 347
Query 367 TCAAAACTTACTACAAGCCATGGATTTTCTCTATATGTTCAAAACTAAGCACAAACGCCA 426
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 348 TCAAAACTTACTACAAGCCATGGATTTTCTCTATATGTTCAAAGCTAAGCACAAATGCCA 407
Query 427 CTGTCATTTCCCATAACAGGATTATAAACGAAGAAAATGATGGCCGTAACAATGTGCAGT 486
||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 408 CTGTCATTTCCCACAACAGGATTATAAACGAAGACAATGATGGTCGTAACAATGTGCAGT 467
Query 487 CTCTTGGACACTTCCTCATTATGGAGAGACGAGCTGTGGGATCAACCATAAGGTCCACAC 546
||||||||||||||||||| ||||||||||||| || |||||||||||| |||||||||
Sbjct 468 CTCTTGGACACTTCCTCATGGTGGAGAGACGAGCCGTCGGATCAACCATACGGTCCACAC 527
Query 547 CGACACCGACACCGACTATGTGAATGTCCGATAATTTA-TAGCCAATTGTGTCTT----- 600
|||| ||||||||||| ||| || ||| |||||||||||| |||
Sbjct 528 CGAC------------TATGTGAATGTTCGA-AAGTTAATAGCCAATTGTGCCTTAAAAG 574
Query 601 T-AAAC--GATAATG-GAATGTGTAATATGATTTCCTCATGGTCTGACGCAACAGATTCT 656
| ||| ||||||| || |||||||||||||||||| ||||||||||||||||||||||
Sbjct 575 TTAAAAAAGATAATGAGA-TGTGTAATATGATTTCCTAATGGTCTGACGCAACAGATTCT 633
Query 657 Gattgtatttttattttgt 675
||||||| | |||||||||
Sbjct 634 GATTGTACTATTATTTTGT 652
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28859048169
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5