BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G02450.1

Length=684
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg349542 jgi|Araly1|349542|fgenesh1_pg.C_scaffold_6000135           555    2e-157
  Ahg485766 jgi|Araly1|485766|fgenesh2_kg.5__1758__AT3G53740.2         285    3e-76 


> Ahg349542 jgi|Araly1|349542|fgenesh1_pg.C_scaffold_6000135
Length=327

 Score =  555 bits (300),  Expect = 2e-157
 Identities = 318/327 (97%), Gaps = 0/327 (0%)
 Strand=Plus/Plus

Query  96   ATGGTGGCGACAGGCTTATTCGTGGGGCTAAACAAAGGACACGTTGTTACCAAACGCGAG  155
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct  1    ATGGTGGCGACAGGCTTATTCGTGGGGATAAACAAAGGACACGTTGTTACCAAGCGCGAG  60

Query  156  CAACCTCCTCGCCCTAACAACAGAAAAGGGAAAACAAGCAAAAGGACTATTTTTATCAGG  215
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  61   CAACCTCCTCGCCCTAACAACAGAAAAGGGAAAACAAGCAAAAGGACTCTTTTTATCAGG  120

Query  216  AATCTCATCAAGGAAGTTGCGGGTCAAGCTCCCTATGAGAAGAGGATCACTGAGCTTTTG  275
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  AGTCTCATCAAGGAAGTTGCGGGTCAAGCTCCCTATGAGAAGAGGATCACTGAGCTTTTG  180

Query  276  AAGGTTGGTAAAGACAAGAGAGCTCTTAAAGTTGCCAAGCGAAAGTTGGGAACTCACAAG  335
            ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  181  AAGGTCGGTAAAGACAAGAGAGCTCTTAAAGTTGCCAAGAGAAAGTTGGGAACTCACAAG  240

Query  336  AGAGCTAAACGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAGGTCTGGTGGT  395
            |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  241  AGAGCTAAGCGAAAGAGAGAGGAGATGTCTAGTGTTCTCCGCAAGATGAGGTCTGGTGGT  300

Query  396  GCTGGTGCATCCGAGAAGAAGAAGTGA  422
            | |||||||||||||||||||||||||
Sbjct  301  GGTGGTGCATCCGAGAAGAAGAAGTGA  327


> Ahg485766 jgi|Araly1|485766|fgenesh2_kg.5__1758__AT3G53740.2
Length=615

 Score =  285 bits (154),  Expect = 3e-76
 Identities = 271/326 (83%), Gaps = 14/326 (4%)
 Strand=Plus/Plus

Query  104  GACAGGCTTATTCGTGGGGCTAAACAAAGGACACGTTGTTACCAAACGCGAGCAACCTCC  163
            ||| || || ||||| ||| | ||||||||||| ||||| |||| ||| ||   | ||||
Sbjct  95   GACCGGTTTGTTCGTTGGGTTGAACAAAGGACATGTTGTCACCAGACGTGAATTAGCTCC  154

Query  164  TCG-CC-C-TAACAACAGAAAAGGGAAAACAAGCAAAAGGACTATTTTTATCAGGAATC-  219
            ||| || | |  |  | | ||||| ||||| ||||| ||||| || ||||||| ||| | 
Sbjct  155  TCGACCTCGT-TC-TC-GCAAAGGAAAAACGAGCAAGAGGACAATCTTTATCA-GAAACT  210

Query  220  TCATCAAGGAAGTTGCGGGTCA-AGCTCCCTATGAGAAGAGGATCACTGAGCTTTTGAAG  278
            | || ||||||||||| ||| |  ||||||||||||||||| ||||||||||||||||||
Sbjct  211  TGATAAAGGAAGTTGCTGGT-ATGGCTCCCTATGAGAAGAGAATCACTGAGCTTTTGAAG  269

Query  279  GTTGGTAAAGACAAGA-GAGCTCTTAAAGTTGCCAAGCGAAAGTTGGGAACTCACAAGAG  337
            |||||||||||||| | | |||||||| ||||| ||| | ||||||||||| ||||||||
Sbjct  270  GTTGGTAAAGACAA-ACGTGCTCTTAAGGTTGCTAAGAGGAAGTTGGGAACCCACAAGAG  328

Query  338  AGCTAA-ACGAAAGAGAGAGGAGATGTCCAGTGTTCTCCGCAAGATGAGGTCTGGTGGTG  396
            |||||| | ||| |||||||||||||||||||  ||||||||| ||||||||||||||||
Sbjct  329  AGCTAAGAGGAA-GAGAGAGGAGATGTCCAGTACTCTCCGCAAAATGAGGTCTGGTGGTG  387

Query  397  CTGGTGCATCCGAGAAGAAGAAGTGA  422
             ||||||| | |||||||||||||||
Sbjct  388  GTGGTGCAACTGAGAAGAAGAAGTGA  413



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25123002303


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5