BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G02460.1
Length=1554
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487022 jgi|Araly1|487022|fgenesh2_kg.6__156__AT5G02460.1 2257 0.0
> Ahg487022 jgi|Araly1|487022|fgenesh2_kg.6__156__AT5G02460.1
Length=1563
Score = 2257 bits (1222), Expect = 0.0
Identities = 1472/1584 (93%), Gaps = 52/1584 (3%)
Strand=Plus/Plus
Query 2 aaaaaaacagaaaactaaagagagaagatatcatcaaagaagaaagatcaaagaTGGTTT 61
||||||| | |||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 1 AAAAAAA-A-AAAACTAAAGAGAGAAAATATCATCAAAGAAGAAAGATCGAAGATGGTTT 58
Query 62 TTTCTTCATTTCCTACTTATCCTGATCATTCATCAAACTGGCAACAACAACATCAACCAA 121
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 TTACTTCATTTCCTACTTATCCTGATCATTCATCAAACTGGCAACAACAACATCAACCAA 118
Query 122 TCACAACCACCGTTGGATTCACGGG--A-AATAACATCAACCAACAGTTTCTTCCTCACC 178
||||||||||||||||||||||||| | || ||||||||||| ||||||||||||||||
Sbjct 119 TCACAACCACCGTTGGATTCACGGGAAACAACAACATCAACCAGCAGTTTCTTCCTCACC 178
Query 179 ATCCCCTCCCACCGCAA---C-A--GCAACAAACGCCTCCGCAGCTTCACCACAACAACG 232
| ||||||||||||||| | | |||||||||||||||||||||||||||||||||||
Sbjct 179 ACCCCCTCCCACCGCAACCGCAACCGCAACAAACGCCTCCGCAGCTTCACCACAACAACG 238
Query 233 GTAACGGCGGAGTC-GCTGTTCCCGGTGGACCTGGCGGGTTAATCCGACCAGGTTCGATG 291
||||||| |||| | | || ||||||||||||||||| ||||||||| ||||||||||||
Sbjct 239 GTAACGGTGGAGGCAG-TGGTCCCGGTGGACCTGGCGTGTTAATCCGTCCAGGTTCGATG 297
Query 292 GCGGAAAGAGCAAGGCTAGCCAACATACCATTACCTGAAACAGCCTTGAAGTGTCCAAGA 351
|||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 298 GCGGAAAGGGCAAGGCTAGCCAACATACCACTGCCTGAAACAGCCTTGAAGTGTCCAAGA 357
Query 352 TGTGACTCAACTAACACCAAATTCTGTTACTTCAACAACTACAGTCTCACTCAACCTCGC 411
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 TGTGACTCAACCAACACCAAATTCTGTTACTTCAACAACTACAGTCTCACTCAACCTCGC 417
Query 412 CACTTCTGCAAAGCATGCCGTCGTTACTGGACACGTGGCGGTGCTCTAAGGAGCGTTCCC 471
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 CACTTTTGCAAAGCATGCCGTCGTTACTGGACACGTGGCGGTGCTCTAAGGAGCGTTCCC 477
Query 472 GTCGGTGGCGGTTGCCGTAGAAACAAAAGAACCAAAAACAGCAGCGGTGGA------GGT 525
|||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 478 GTCGGTGGTGGTTGCCGTAGAAACAAAAGAACCAAAAACAGCAGCGGTGGAGGTGGCGGT 537
Query 526 GGCGGTAGCACCAGTAGCGGTAACAGCAAGTCACAAGACAGCGCCACGAGCAACGACCAA 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GGCGGTAGCACCAGTAGCGGTAACAGCAAGTCACAAGACAGCGCCACGAGCAACGACCAA 597
Query 586 TACCACCACCGAGCCATGGCTAACAATCAGATGGGACCACCTTCTTCGTCATCGTCTCTA 645
||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||| |
Sbjct 598 TACCACCACCGAGCCATGGCTAACAATCAGATGGGACCACCGTCTTCTTCATCTTCTTTG 657
Query 646 AGCTCGTTGCTGTCTTCTTACAACGCAGGGTTAATCCCCGGACATGATCATAACAGCAA- 704
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 658 AGCTCGTTGCTGTCTTCTTACAACGCAGGATTAATCCCCGGACATGATCATAACAACAAC 717
Query 705 --TAACAACAACA---TACTTGGACTTGGATCATCTTTGCCTCCTCTTAAGCTTATGCCT 759
||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 718 AATAACAACAACAACATACTTGGACTTGGATCATCTTTGCCTCCTCTCAAGCTCATGCCT 777
Query 760 CCTTTAGACTTCACAGACAACTTCACCTTACAATACGGTGCCGTTTCAGCTCCTTCTTAT 819
||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 778 CCTATAGACTTCACTGACAACTTTACCTTACAATACGGTGCCGTTTCAGCTCCTTCTTAT 837
Query 820 CATATAGGCGGTGGAAGCAGTGGAGGAGCGGCGGCTCTTTTAAACGGTTTTGACCAGTGG 879
|||||||||||||||||||| ||||||||| |||||||||| | ||||||||||||||||
Sbjct 838 CATATAGGCGGTGGAAGCAGCGGAGGAGCGCCGGCTCTTTTGACCGGTTTTGACCAGTGG 897
Query 880 AGATTCCCGGCAACAAACCAACTTCCTTTAGGCGGTTTAGACCCGTTTGATCAACAACAT 939
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||
Sbjct 898 AGATTCCCGGCAACAAACCAACTTCCTTTAGGTGGTTTAGACCCGTTTGATCATCAA-AT 956
Query 940 CAAATGGAGCAGCAGAATCCAGGTTACGGATTGGTTACCGGGTCGGGTCAGTATCGACCT 999
| | |||| |||||||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct 957 -A---G-AGCAACAGAATCCGGGTTACGGATTAGTTACCGGGTCGGGTCAGTACCGACCT 1011
Query 1000 AAGAACATTTTCCATAACCTTATCTCCTCTTCTTCGTCTGCTTCATCAGCTATGGTTACA 1059
||||||||||||||||||||||| ||||||||||| | ||||| |||||||||||||||
Sbjct 1012 AAGAACATTTTCCATAACCTTATTTCCTCTTCTTC-T--GCTTCGTCAGCTATGGTTACA 1068
Query 1060 GCCACCGCGTCGCAATTAGCTTCAGTGAAAATGGAAGATAGTAACAATCAGCTCAACTTG 1119
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1069 GCCACCGCGTCGCAATTAGCTTCGGTGAAAATGGAAGATAGTAACAATCAGCTCAACTTG 1128
Query 1120 TCTAGACAACTTTTTGGAGACGAACAACAGCTCTGGAATATTCATGGCGCTGCTGCAGCA 1179
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1129 TCTCGACAACTTTTTGGAAACGAACAACAGCTCTGGAATATTCATGGCGCTGCTGCAGCA 1188
Query 1180 TCCACCGCAGCTGCAACAAGTTCGTGGAGTGAAGTCTCTAATAATTTCAGTTCTTCTTCT 1239
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1189 TCCACCGCAGCCGCAACAAGTTCGTGGAGTGACGTCTCTAATAATTTCAGTTCTTCTTCT 1248
Query 1240 ACTAGCAATATATAAACAATCATCTCTCTAAGTGA-TCAATATATGTGATGATGCAATTA 1298
||||||||||| ||| |||||||||||||||| || || ||||||||||||| | | |
Sbjct 1249 ACTAGCAATATCTAATCAATCATCTCTCTAAG-GAATC--TATATGTGATGATT-A-TGA 1303
Query 1299 TGCTTTTATTAGTTTCTTATTGGGTGTGGTATGATCTTATGTACTTAGTTTGAAGTTAGT 1358
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1304 TGCTTTTATTAATTTCTTATTGGGTGTGGTATGATCTTATGTACTTAGTTTGAAGTTAGT 1363
Query 1359 ACATCGATCGATCTATA--CTAGgtttttgttttttctattaaattttcgttactagttt 1416
||||||||||||||||| |||||||| | |||||||||||| |||||||||||||||||
Sbjct 1364 ACATCGATCGATCTATATACTAGGTTTCTATTTTTTCTATTACATTTTCGTTACTAGTTT 1423
Query 1417 tgggttttcttttttggattttcta--tt-aaaattagggttttttttctgttgcagaat 1473
||| |||| ||||||||||||| || || |||||||||||||||| || ||||| |||
Sbjct 1424 TGGTTTTTTTTTTTTGGATTTT-TAGGTTTAAAATTAGGGTTTTTT--CTATTGCA-AAT 1479
Query 1474 ttatttttcatttttCAGTATGAAG--AT-ATCATCATACATGCGTGTAATGTGTTCTAT 1530
||||||||||||||| ||||||| | || || |||||||||||||||||||||||||||
Sbjct 1480 TTATTTTTCATTTTTTAGTATGACGGTATGATGATCATACATGCGTGTAATGTGTTCTAT 1539
Query 1531 TATATAACATATTTTTATTTATTC 1554
||||||||||||||||||||||||
Sbjct 1540 TATATAACATATTTTTATTTATTC 1563
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58201894360
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5