BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G02470.1
Length=1146
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487025 jgi|Araly1|487025|fgenesh2_kg.6__159__AT5G02470.2 1705 0.0
> Ahg487025 jgi|Araly1|487025|fgenesh2_kg.6__159__AT5G02470.2
Length=1157
Score = 1705 bits (923), Expect = 0.0
Identities = 1010/1051 (96%), Gaps = 9/1051 (1%)
Strand=Plus/Plus
Query 64 ATGAGTATGGAGATGGAGTTGTTTGTCACTCCAGAGAAGCAGAGGCAACATCCTTCAGTG 123
||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||| |||
Sbjct 110 ATGAGTATGGAGATGGATTTGTTTGCCACTCCAGAGAAGCAGAGACAACATCCTTCTGTG 169
Query 124 AGCGTT-GAGAAAACTCCAGTGAGAAGGAAATTGATTGTTGATGATGATTCTGAAATTGG 182
||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 170 AGC-TTGGAGAAAACTCCAGTGAGAAGGAAATTGATAGTTGATGATGATTCTGAAATTGG 228
Query 183 ATCAGAGAAGAAAGGGCAATCAAGAACTTCTGGAGGCGGGCTTCGTCAATTCAGTGTTAT 242
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 229 ATCAGAGAAGAAAGGGCAATCGAGAACTTCTGGAGGTGGGCTTCGTCAATTCAGTGTTAT 288
Query 243 GGTTTGTCAGAAGTTGGAAGCCAAGAAGATAACTACTTACAAGGAGGTTGCAGACGAAAT 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 289 GGTTTGTCAGAAGTTGGAAGCCAAGAAGATAACTACTTACAAGGAGGTTGCAGACGAGAT 348
Query 303 TATTTCAGATTTTGCCACAATTAAGCAAAACGCAGAGAAGCCTTTGAATGAAAATGAGTA 362
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 CATTTCAGATTTTGCCACAATTAAGCAAAACGCAGAGAAGCCTTTGAATGAAAATGAGTA 408
Query 363 CAATGAGAAGAACATAAGGCGGAGAGTCTACGATGCGCTCAATGTGTTCATGGCGTTGGA 422
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 409 CAATGAGAAGAACATAAGGCGGAGAGTCTATGATGCGCTCAATGTGTTCATGGCCTTGGA 468
Query 423 TATTATTGCAAGGGATAAAAAGGAAATCCGGTGGAAAGGACTTCCTATTACCTGCAAAAA 482
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 469 TATTATCGCAAGGGATAAAAAGGAAATCCGGTGGAAAGGACTTCCTATTACATGCAAAAA 528
Query 483 GGATGTGGAAGAAGTCAAGATGGATCGTAATAAAGTTATGAGCAGTGTGCAAAAGAAGGC 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 GGATGTGGAAGAAGTCAAGATGGATCGTAATAAAGTTATGAGCAGTGTGCAAAAGAAGGC 588
Query 543 TGCTTTTCTTAAAGAGTTGAGAGAAAAGGTCTCAAGTCTTGAGAGTCTTATGTCGAGAAA 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 TGCTTTTCTTAAAGAGTTGAGAGAAAAGGTCTCAAGTCTTGAGAGTCTTATGTCGAGAAA 648
Query 603 TCAAGAGATGGTTGTGAAGACTCAAGGCCCAGCAGAAGGATTTACCTTACCATTCATTCT 662
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 649 TCAGGAGATGGTTGTGAAGACTCAAGGCCCAGCAGAAGGATTTACCTTACCGTTCATTCT 708
Query 663 ACTTGAGACAAACCCTCACGCAGTAGTCGAAATCGAGATTTCTGAAGATATGCAACTTGT 722
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 ACTTGAGACAAATCCTCACGCAGTAGTCGAAATCGAGATTTCTGAAGATATGCAACTTGT 768
Query 723 ACACCTCGACTTCAATAGCACACCTTTCTCGGTCCATGATGATGCTTACATTTTGAAACT 782
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 769 ACACCTCGACTTCAATAGCACACCTTTCTCGGTCCATGACGATGCTTACATTTTGAAACT 828
Query 783 GATGCAAGAACAGAAGCAAGAACAGAACAGAGTATCTTCTTCTTCATCTACACATCACCA 842
||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||
Sbjct 829 GATGCAAGAACAGAAGCAACAACAAAACAGAGTATCTTCTTCTTCCTCTACACATCACCA 888
Query 843 ATCTCAACATAGCTCCGCTCATTCTTCATCCAGTTCTTGCATTGCTTCTGGAACCTCAGG 902
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 889 ATCTCAACATAGCTCAGCTCATTCTTCCTCCAGTTCTTGCATTGCTTCTGGAACCTCAGG 948
Query 903 CCCGGTTTGCTGGAACTCGGGATCCATTGATACTCGCTGACCGAGCTTCTATTCCCAAAT 962
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 949 CCCGGTTTGCTGGAACTCGGGATCCATTGATACTCGCTGACCAAGAG-CTATTCCCAAAT 1007
Query 963 TCTTCAAGAAGAAG-AAGTAATGATCTAATTGGTATACTAAAAAATTATACATCTGGTTT 1021
|||||||||||| | |||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1008 TCTTCAAGAAGA-GCAAGTGATGATCTAATTGGTATACTATAAAATTATACATCTGGTTT 1066
Query 1022 AGTGTTCAATTGAGAGAGACTGTAAAAT--CAATTCATAGGCCAACAAA--TGTTTGTTT 1077
| ||||||| || ||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 1067 AATGTTCAACTGGGAGAGACTGTAAAATGACAATTCATAGGCCAACAAAAATGTTTGTTT 1126
Query 1078 ATCCAATTTTCCTTTTTATTCGAACTTGATG 1108
|||||||||||||||||||| |||||| |||
Sbjct 1127 ATCCAATTTTCCTTTTTATTGGAACTTCATG 1157
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42735789957
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5