BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G02480.1
Length=2350
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939626 jgi|Araly1|939626|scaffold_600170.1 2420 0.0
> Ahg939626 jgi|Araly1|939626|scaffold_600170.1
Length=1556
Score = 2420 bits (1310), Expect = 0.0
Identities = 1471/1548 (95%), Gaps = 14/1548 (1%)
Strand=Plus/Plus
Query 590 ATGAAAGGTTCAATTCTTACTGTTTTGTCAATGGAGAATCATCATCCGTCAACGCTTTTA 649
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 22 ATGAAAGGTTCAATTCTTACTGTTTTGTCAATGGAGAATCATCATCCTTCAACGCTTTTA 81
Query 650 TCTATGGATTCTAGTGGCTCATCTCATGAAGAGCTTGATTTGGAGATGAACAATGGTAAT 709
|| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 82 TCAATGGACTCTAGTGGTTCATCTCATGAAGAGCTTGATTTGGAGATGAACAATGGTAAT 141
Query 710 AGGCAAATCACTCTTTATAATCCACCAGACATTAATCTGCCTTTGTCTGTAGGAAGAAGC 769
|||||||||| ||||| |||||||||||||| ||||||||||||||||| ||| |||||
Sbjct 142 CGGCAAATCACACTTTACAATCCACCAGACATCAATCTGCCTTTGTCTGTTGGACGAAGC 201
Query 770 TCTCCTTCTTGGAATTTGGATTCTTGTGATAACATTTTGGATGTTGGTCTTAGCTCTCAT 829
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 202 TCTCCTTCATGGAATTTGGATTCTTGTGATAACATTTTGGATGTTGGTCTTAGCTCTCAT 261
Query 830 GTCTATGAGACCGAGACGTTTCTCAATGTGGTCCCGAGTAAAGTAGCTAAGAAGTGTTTG 889
|| || |||||||||||||||||||||||||| ||||||||||| |||||||| || |||
Sbjct 262 GTTTACGAGACCGAGACGTTTCTCAATGTGGTTCCGAGTAAAGTCGCTAAGAAATGCTTG 321
Query 890 AAACGAGGGGATAGTATGTGGGGAGCTTGGTTTTTCTTTAGCTTCTACTTCAGACCGGCG 949
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 322 AAACGAGGGGATAGTATGTGGGGAGCTTGGTTTTTCTTTAGCTTCTACTTCAAACCGGCG 381
Query 950 TTGAATGAGAAATCCAAGTCTAAGGTCATTAGGGAAAGTGGTGGTGGTggagga-ggagg 1008
|||||||||||||| |||||||||||||||||||||| | || | | |||||
Sbjct 382 TTGAATGAGAAATCGAAGTCTAAGGTCATTAGGGAAA------CTAGT--A--ATGGAGG 431
Query 1009 aggaggaTGTTTTACTGGGTTTGATAAATCTGATCTCAAGCTCGATGTTTTTCTTGTTCA 1068
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 432 AGGAGGATGTTTTACTGGGTTTGATAAATCTGATCTCAAGCTCGATGTTTTTCTTGTTCA 491
Query 1069 GCATGATATGGAGAACATGTATATGTGGGCTTTTAAGGATAAACCTGAGAATGCGCTTGG 1128
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 492 GCATGATATGGAGAACATGTATATGTGGGCTTTTAAGGATAAACCCGAGAATGCGCTCGG 551
Query 1129 GAAAATGCAGTTGAGAAGCTATATGAATGGGCATTCTCGTCAAGGTGAGCGTCCGTTTCC 1188
||||||||||||||||| || ||||||||||||||||||||||||||||| || |||||
Sbjct 552 TAAAATGCAGTTGAGAAGTTACATGAATGGGCATTCTCGTCAAGGTGAGCGCCCCTTTCC 611
Query 1189 GTTTAGTGCGGAGAAAGGGTTTGTTCGGTCTCACAGAATGCAGAGGAAGCATTACAGGGG 1248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 612 GTTTAGTGCGGAGAAAGGGTTTGTTCGGTCTCACAGAATGCAGAGGAAGCATTACAGAGG 671
Query 1249 ACTCTCTAATCCTCAGTGTCTTCACGGGATTGAGTTTGTGGCTTCGCCGAGTTTGTTTGG 1308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 672 ACTCTCTAATCCTCAGTGTCTTCACGGGATTGAGTTTGTGGCTTCGCCGAGTTTGTTTGG 731
Query 1309 TGTCGGTGAAGAAGATAAGAAGAGATGGATGGAGCTCACGGGTCGAGATTTGAAGTTCAC 1368
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 732 TGTCAGTGAAGAAGATAAGAAGAGATGGATGGAGCTGACGGGTCGAGATTTGAAGTTCAC 791
Query 1369 TATCCCTCCTGATGCTAGTGATTTCGGTTCATGGAGAAATCTTCCCAACACAGACATCGA 1428
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 792 TATCCCTCCTGATGCTAGTGATTTCGGTTCATGGAGAAATCTTCCCAACACAGATATCGA 851
Query 1429 GCTAGAGAGACCAGCTCATGTTACTAAAGCAGCACCGAATAACGCCAAGAAGATTCTCAA 1488
|||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||
Sbjct 852 GCTAGAGAGACCAGCTCATGTTACAAAACCGGCACCGAATAACGCCAAGAAGATTCTCAG 911
Query 1489 TGGCTCCGGCTTACATTTGACAAGCAATGCGTCTTTCAGTAGCAATGGGGACTCGTCTGA 1548
||||| || ||||||||||| ||||| ||||||||||||||||||||||||||||| ||
Sbjct 912 CGGCTCGGGTTTACATTTGACTAGCAACGCGTCTTTCAGTAGCAATGGGGACTCGTCGGA 971
Query 1549 TCAATCTCCAGGAGGAGGAGTCATCAACAACAAGAAGAGAAAAGAGTTTCTATCTCCTGG 1608
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 972 TCAATCTCCAGGAGGAG---TCATCAACAACAAGAAGAGAAAAGAGTTTCTATCTCCGGG 1028
Query 1609 AAGCAGCGAAGAAGAATGCTGTTTGACTGTTAACAACATCGAGACCCACCACGCCAAGGA 1668
|||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||
Sbjct 1029 AAGCAGCGAAGAAGAATGTTGTTTAACTGTTAACAACATCGAGACCCACCACTCCAAGGA 1088
Query 1669 CCCGCCCAGTTGGGTAAACGACTTCACGGGAGTGATGAAGAATAGCTGCGGACCTGTAAC 1728
||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||
Sbjct 1089 CCCGCCCAGTTGGGTAAACGACTTCACTGGAGTTATGAAGAATAGCTGCGGACCCGTAAC 1148
Query 1729 TGCTGCAAAAACCGTCTATGAGGACGAAGAAGCTTATCTGGTCGTAATAACTCTACCATT 1788
||| |||||||||||||| |||||||||||||||||||| |||||||| |||||||||||
Sbjct 1149 TGCAGCAAAAACCGTCTACGAGGACGAAGAAGCTTATCTAGTCGTAATTACTCTACCATT 1208
Query 1789 TGTGGATTTGAACACCGTGAAGGTTTCATGGAGGAACAATATCACAAATGGAATCGTGAA 1848
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1209 TGTTGATTTGAACACCGTGAAGGTTTCATGGAGGAACAATATCACAAATGGAATCGTGAA 1268
Query 1849 GGTCACGGGACTAAGCACTTCGAGGGCTTCGTTTGTGAAGAGACGGGACCGGACTTTCAA 1908
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1269 GGTCACGGGACTGAGCACTTCAAGGGCTTCGTTTGTGAAGAGACGGGACCGGACTTTCAA 1328
Query 1909 GCTGGTTGATCAGATGGCTGAGCATTGTCCTCCAGGGGAATTCATGAGGGAGATACAATT 1968
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1329 GCTGGTTGATCAGACGGCTGAGCATTGTCCTCCAGGGGAATTCATGAGGGAGATACAGTT 1388
Query 1969 GCCGAATCGGATTCCGGAAGAAGCAAATATTGAAGCATACTTTGATGGGACTGGACCAGT 2028
||| ||||||||||||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct 1389 GCCAAATCGGATTCCGGAAGAAGCAAACATCGAAGCATATTTTGATGGGACTGGACCAGT 1448
Query 2029 TTTAGAGATTGTGGTTCCAAAATTGAGAGGAGGAGTGGAGGAAGAACACGAGGTTAGAGT 2088
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1449 TTTAGAGATTGTGGTTCCAAAATTGAGAGGAGGAGTGGAGGAAGAACACGAGGTTAGAGT 1508
Query 2089 TTGTCTACGGTCACACCACCTCGGATGAAAGATGCAACCATGTTTTAA 2136
|||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1509 TTGTCTACGGTCACACCACCTCGGATAAAAGATGCAACCATGTTTTAA 1556
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88521729380
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5