BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G02502.1

Length=521
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg939629 jgi|Araly1|939629|scaffold_600173.1                        217    8e-56


> Ahg939629 jgi|Araly1|939629|scaffold_600173.1
Length=228

 Score =  217 bits (117),  Expect = 8e-56
 Identities = 125/129 (97%), Gaps = 0/129 (0%)
 Strand=Plus/Plus

Query  95   ATGTTTGACGACCAAGACCTCGGCTTCTTTGCCAATTTTCTGGGGATTTTCATCTTCATA  154
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  99   ATGTTTGACGACCAAGACCTCGGCTTCTTTGCCAATTTTCTGGGGATTTTCATCTTCATA  158

Query  155  ATGGTCATTGCATACCATTTCGTGGTGGCAGAGCCTAAATTCGAATGAGAATGAGGTTTC  214
            ||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||| 
Sbjct  159  ATGGTCATTGCATACCATTTCGTGGGGGCAGAGCCAAAATTCGAATGAAAATGAGGTTTT  218

Query  215  ATCTTTGTT  223
            |||||||||
Sbjct  219  ATCTTTGTT  227



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18963327733


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5