BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G02510.1
Length=540
Score E
Sequences producing significant alignments: (Bits) Value
Ahg349548 jgi|Araly1|349548|fgenesh1_pg.C_scaffold_6000141 865 0.0
> Ahg349548 jgi|Araly1|349548|fgenesh1_pg.C_scaffold_6000141
Length=744
Score = 865 bits (468), Expect = 0.0
Identities = 518/542 (96%), Gaps = 3/542 (1%)
Strand=Plus/Plus
Query 2 TGAGCAACAAGAATTACGTGTTTGAAGAGGCAAAAGAGAGTTTAAGCTCAATTTTGTTCA 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 203 TGAGCAACAAGAATTACGTGTTTGAAGAGGCAAAAGAGAGTTTAAGCTCAATTTTGTTCA 262
Query 62 ATGGGGATTCTGATAGAACAGAAGCTGGCTTTTTTGATGGATCTGTGGAAAGTTGGAACG 121
|||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||| |
Sbjct 263 ATGGGGATTCGGATAGAACAGAAGCTGGCTCATTTGATGGATCTGTGGGAAGTTGGAAGG 322
Query 122 ATGAGGATATGATCGATGGAGCTAAATGGGTTGATAGACTTGTATCCGAGATGACAAAAG 181
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 323 ATGAGGATATGATCGATGGAGCTAAATGGGTTGATAGACTTGTATCCGAGATGGCAAAAG 382
Query 182 CGATAAACATTGATGACATGAGGCGACGTGTTGCAGTGATCTTAGAAGCTTTAGAGAGTA 241
| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
Sbjct 383 CAATAAACATTGATGATATGAGGCGACGTGTCGCAGTGATCTTAGAAGCTTTAGAGAGAA 442
Query 242 TCATAAAGAAGAACACCAACGCCTCGAAGAAGCTTGAATATGCGTCGATGAAGGAGAGTC 301
||||||| ||||||||||| |||||||| ||||||||||||| |||| ||||||||||||
Sbjct 443 TCATAAAAAAGAACACCAATGCCTCGAACAAGCTTGAATATGTGTCGTTGAAGGAGAGTC 502
Query 302 TACAGAGTTTGATCAATGATAACCAAATATTGAAGCGGGTCATTGCGAATCAACATCAGC 361
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 503 TACAGAGTTTGATCAATGATAACCAAATCTTGAAGCGGGTCATTGCGAATCAACACCAGC 562
Query 362 GTAGCTCTGAAAACGAAGAGAAGGCCAAACAAGTACTGCATTTGAGAGGCGTGGTGGGGC 421
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 563 GTAGCTCTGAAAACGAAGAGAAGGCCAAACAAGTACAGCATTTGAAAGGCGTGGTGGGGC 622
Query 422 AGTACCAAGAACAAGTTCATAAGCTAGAGCTTAGCAACTACGCCATGAAACTCCATCTTC 481
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 623 AATACCAAGAACAAGTTCATAAGCTAGAGCTTAGCAACTACGCCATGAAACTCCATCTTC 682
Query 482 AAAGGTCACAACAACAACA---GACTTCTTTCTCAGGGAATTTGCCTCCAGACATCTACT 538
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 683 AAAGGTCACAACAACAACAACAGACTTCTTTCTCAGGGAATTTGCCTCCAGACGTCTACT 742
Query 539 AA 540
||
Sbjct 743 AA 744
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19688283924
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5