BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G02520.1
Length=2099
Score E
Sequences producing significant alignments: (Bits) Value
Ahg349549 jgi|Araly1|349549|fgenesh1_pg.C_scaffold_6000142 785 0.0
> Ahg349549 jgi|Araly1|349549|fgenesh1_pg.C_scaffold_6000142
Length=1512
Score = 785 bits (425), Expect = 0.0
Identities = 566/634 (89%), Gaps = 10/634 (2%)
Strand=Plus/Plus
Query 1 ATGACGGAACCAAATCTCGACGAAGATGGTTCCAAGTCGTCTTTCCAGAAAACGGTGGTG 60
||| |||||||||||| |||||| |||||||| ||||||| |||||||||||||||||||
Sbjct 1 ATGGCGGAACCAAATCCCGACGACGATGGTTCGAAGTCGTATTTCCAGAAAACGGTGGTG 60
Query 61 CTGAGAGATTGGTGGTTGATAAAATGCCCAAAGGAATTCGAAGGGAAACAATTTGGTGTT 120
|||||||||||||||||| | ||||| |||||||||||||| || |||| ||||||||||
Sbjct 61 CTGAGAGATTGGTGGTTGGTTAAATGTCCAAAGGAATTCGACGGCAAACGATTTGGTGTT 120
Query 121 GCTGGATTCGAAGAGTCCGTCGAGACAAGAGCAATGCGTGTGTTTACATCTTCACCAATC 180
|||||||||||||| ||||||||||| |||||||||||||||||| |||||| ||||||
Sbjct 121 GCTGGATTCGAAGATTCCGTCGAGACTCGAGCAATGCGTGTGTTTAAATCTTCCCCAATC 180
Query 181 ACCAAAGCTTTGGATGTTTTCACACTCTTAGCATCTGATGGAATCTATATCACTCTCAGA 240
| || ||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 181 ATCAGAGCTTTGGATGTTTTCACACTCTTAGCATCTGATGGAATCTATATAACTCTCCGT 240
Query 241 GGTTTTCTTAACAAAGAACGCGTTCTTAAAAATGGATTTAACCCTGAGATTTCTCGTGAA 300
|||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||
Sbjct 241 GGTTTTCTTAACAAAGAACGCGTTGTTAATAATGGATTTACCCCTGAGATTTCTCGTGAA 300
Query 301 TTCATCTTCGGGTTTCCTCCTTGTTGGGAACGAGTTTGTAACAGTTGCTTTGAAGGAGAC 360
||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 301 TTCATCTTCGGATTTCCTCCTTGTTGGGAACGATTTTGTAACAGTTGCTTTCTTGGAGAC 360
Query 361 TCTTTTGGCACTGATGTTAATACCGTCCCTTCGACTATCGAGAAAGCTTGTCCTCCCATT 420
|||| |||||||||| ||||||| ||||||||||| ||||| ||||||| ||||||||||
Sbjct 361 TCTTGTGGCACTGATATTAATACTGTCCCTTCGACAATCGATAAAGCTTTTCCTCCCATT 420
Query 421 TTATCACCTTGTAAGTACTCTAACAGGAATCTTA-AGGATAATCCAGCTGAGAGCAGAGA 479
|||||||| ||||||||||| ||| ||||| | | ||||| ||||| |||||||||||||
Sbjct 421 TTATCACCATGTAAGTACTCGAACGGGAATGT-AGAGGATTATCCATCTGAGAGCAGAGA 479
Query 480 GAAAAGCAATGTGACTGAGACTGATATTGCAGAGATTAATGATAAAGGTGGTTCTG-GAG 538
||||||| |||||||||||| ||||| |||||||||||||||||| |||||| | |||
Sbjct 480 TAAAAGCAGTGTGACTGAGACGGATATCACAGAGATTAATGATAAAGATGGTTC-GAGAG 538
Query 539 CAAGAGATATAAAAACTGCAAGGAGAAGGTCTCTTCATCT--GCAAATA--A--AAAGGA 592
|||||| || ||||||||||||||||| |||||||||||| | || | | ||||||
Sbjct 539 CAAGAGCTAAAAAAACTGCAAGGAGAAAGTCTCTTCATCTAAGTGAAGAGGAGGAAAGGA 598
Query 593 TACTTGAATCGAGTAAAGTCCGGAAGACTGCTAA 626
||||||||||||||| |||| ||| ||| ||||
Sbjct 599 AACTTGAATCGAGTAATGTCCAGAACACTACTAA 632
Score = 597 bits (323), Expect = 1e-169
Identities = 360/378 (95%), Gaps = 2/378 (1%)
Strand=Plus/Plus
Query 1404 GAAAGGAAAATCAAAGAAAAGTGAGAAGACCCTTCAAAGTAACAGCAATGTTGTAGAGCC 1463
|||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 1131 GAAAGGAAAATCAAGGAAAAGTGAGAAGACCCTTCAAAGTGACAGCAATGTGGTAGAGCC 1190
Query 1464 TATGAATCATTTC-AGGTCTGAAGCTGAAGAAGCTGAAGAAAACTTGTCATGGGAAAAAA 1522
||||||||| || |||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 1191 TATGAATCA-GTCGAGGTCTCAAGTTGAAGAAGCTGAAGAAAACTTGTCATGGGAAAAAA 1249
Query 1523 TAAAGAGGAAAATCGACTTTGATGTGGAGGTAACACCGGaaaaaaaaGTGAAGCAGCAGA 1582
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1250 TAAAGAGGAAAATCGACTTTGATGTGGAGGTAACACCGGAAAAAGAAGTGAAGAAGCAGA 1309
Query 1583 AGACCAATGCGGCGTCTACTGATTCATTGGGACAGAAACGGTCAAGATCAGGAAGGGTGC 1642
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1310 AGACCAATGCGGCGTCTACTGATTCAGTGGGACAGAAACGGTCAAGATCAGGAAGGGTGC 1369
Query 1643 TTGTGTCATCACTAGAGTTTTGGCGTAACCAAATTCCTGTTTATGATATGGATCGGAACC 1702
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1370 TTGTATCATCACTAGAGTTTTGGCGCAACCAAATTCCTGTTTATGATATGGATCGGAACC 1429
Query 1703 TTATCCAAGTAAAGGATGGTAGTGAGACTAACTCCGCTCCATCTAAAGGAAAAGGATCGG 1762
||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 1430 TTATCCAAGTAAAGGATGGGAGTGAGACTAACTCCACTCCATCTAAAGGAAAAGGATCGA 1489
Query 1763 ATTCTCGAAAGCGAAGAA 1780
|||||| ||||| |||||
Sbjct 1490 ATTCTCAAAAGCCAAGAA 1507
Score = 486 bits (263), Expect = 2e-136
Identities = 348/389 (89%), Gaps = 6/389 (2%)
Strand=Plus/Plus
Query 662 CTAAGCGCGGTGATGTAGAAAGAGATGGATGTGAGGTTATCAATAATGAAGACAGTGAAT 721
||||| ||||||||||||||| |||||||| || || ||||||||||||||||| |||||
Sbjct 629 CTAAGAGCGGTGATGTAGAAAAAGATGGATATGTGGCTATCAATAATGAAGACAATGAAT 688
Query 722 GGAAACTCGATGAAAGTGAAG-TCCAGAATCT-TTGTAATGATGGAGATAATGGTAGTGA 779
|||||||||||| |||| || |||||||| | | ||||||||||| | ||||||||||
Sbjct 689 GGAAACTCGATGGCAGTG-AGCTCCAGAAT-TGTACTAATGATGGAGTTCATGGTAGTGA 746
Query 780 AGGTTTCATTAAGGCTAAGAGCAGTGATGTAGAAAAAGATAAGAGCGAAGCTATCGATAA 839
|||||| ||||||||||||||||||||||||||||||||| || |||||| |||||||||
Sbjct 747 AGGTTTAATTAAGGCTAAGAGCAGTGATGTAGAAAAAGATGAGTGCGAAGTTATCGATAA 806
Query 840 TGATGTGATATCTCCAGCGGTTGGAAGTGGTATTAAGCATACCGGTGCAGATAATGTTGA 899
| |||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 807 TAATGTGATATCGCCAGCGGTTGGATGTGGTATTAAGTATACCGGTGCAGATAATGTTGA 866
Query 900 TAAAGTGACAAGTGCAAGTGCTACTGGAGAATCACTTACTTCGGAACAGC-AAAATGGTT 958
|||||| |||||||| |||||||||||||||||||| ||| | ||||||| |||| |||
Sbjct 867 TAAAGTAACAAGTGCGAGTGCTACTGGAGAATCACTGACTCCAGAACAGCGAAAA-GGTG 925
Query 959 TACTTGTAACAACAGCATCTCCACATTCCCTGCTTAAAGACTTAGCCAAGAGTAGCAAAC 1018
|||| | ||| |||||||||||||| | |||||||||||| |||| |||||||||||||
Sbjct 926 TACTGGGAACGACAGCATCTCCACAATGCCTGCTTAAAGATTTAGACAAGAGTAGCAAAT 985
Query 1019 CTGAAAAGAAAGGAATATCCAAGAAAAGT 1047
||||||||||||||||||| |||||||||
Sbjct 986 CTGAAAAGAAAGGAATATCGAAGAAAAGT 1014
Score = 139 bits (75), Expect = 7e-32
Identities = 88/94 (94%), Gaps = 1/94 (1%)
Strand=Plus/Plus
Query 1317 AAGTAAGAATGCTACTAAAGAATCACTGACGTCAGTACAGCGAAAAGGTAGAGTGAAGGT 1376
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 1011 AAGTAAGAATGCTACTAAAGAATCACTGCCGTCAGAACAGCGAAAAGGTAGAGTGAAGGT 1070
Query 1377 ATCGAAGGCATTTCAAGATCCCCTGTCGAAAGGA 1410
| | ||||||| |||||||||||||||||| |||
Sbjct 1071 AACAAAGGCATCTCAAGATCCCCTGTCGAA-GGA 1103
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78961077885
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5