BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G02530.1
Length=1213
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487031 jgi|Araly1|487031|fgenesh2_kg.6__165__AT5G02530.1 1620 0.0
> Ahg487031 jgi|Araly1|487031|fgenesh2_kg.6__165__AT5G02530.1
Length=1129
Score = 1620 bits (877), Expect = 0.0
Identities = 1071/1159 (92%), Gaps = 36/1159 (3%)
Strand=Plus/Plus
Query 22 TTTGAAATCTCAGAGCAACAAAACCCTAGCTAC---AT-TTCTCGATATCGGAGAA-AAG 76
||| |||||||| |||||||||||||||| ||| | ||||||||||||||||| |||
Sbjct 1 TTTCAAATCTCACAGCAACAAAACCCTAGATACTTGCTCTTCTCGATATCGGAGAAGAAG 60
Query 77 ATCCGGCGAAGATGTCAGGTGGCTTAGATATGTCACTTGATGATATCATCAAATCTAATC 136
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 61 ATCCGGCGAAGATGTCAGGTGGCTTGGATATGTCACTTGATGATATCATCAAATCTAACC 120
Query 137 GAAAACCTACTGGATCTCGCGGCCGAGGAGGCATTGGAGGTGGCAATAACACCGGTGGTC 196
| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 121 GTAAACCTACTGGATCTCGCGGCCGAGGAGGCATTGGTGGTGGTAATAACACCGGTGGTC 180
Query 197 GCGGTGGTTCCGGTTCTAATTCCGGTCCGTCTCGTCGGTTTGCTAACCGCGTAGGAGCCA 256
|||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 181 GCGGCGGTTCCGGTTCTAATTCCGGTCCGGCTCGTCGATTTGCTAACCGCGTAGGAGCCA 240
Query 257 GAACGGCGCCGTATTCAAGGCCGATTCAACAACAACAAGCTCATGATGCGATGTGGCAAA 316
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 241 GAACGGCGCCGTATTCAAGGCCGATT---CAACAACAAGCTCATGATGCGATGTGGCAAA 297
Query 317 ACGACGTCTTCGCGACTGATGCGTCTGTGGCGGCGGCTTTTGGGCATCATCAGACTGCTG 376
|||| || || |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 298 ACGATGTTTTTGCGACTGACGCGTCTGTGGCGGCGGCTTTTGGGCATCATCAGACTGCTG 357
Query 377 TTGTTGGTGGTGGCTCGTCTATCGAGACTGGAACTAAGCTTTACATTTCAAACTTAGACT 436
|||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||| |
Sbjct 358 TTGTTGGTGGTGGCTCTTCTATCGAGACTGGAACTAAGCTCTACATTTCCAACTTAGATT 417
Query 437 ATGGTGTCTCCAACGAAGATATCAAGGAGCTTTTCTCTGAGGTTGGTGATCTTAAGCGAT 496
|||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||| |
Sbjct 418 ATGGTGTCTCAAACGAAGATATCAAGGAGCTTTTCTCTGAAGTTGGTGACCTTAAGCGGT 477
Query 497 ATGGGATTCACTATGATAGGAGTGGAAGATCAAAGGGGACTGCTGAAGTTGTTTTCTCGA 556
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 478 ATGGGATTCACTATGATAGGAGTGGAAGATCAAAGGGTACTGCTGAAGTTGTTTTTTCGA 537
Query 557 GGCGTGGGGATGCATTGGCAGCTGTCAAGCGTTACAACAATGTTCAGTTGGATGGAAAAC 616
||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 538 GGCGTGGTGATGCCTTGGCAGCTGTCAAGCGTTACAACAATGTTCAATTGGATGGAAAAC 597
Query 617 TGATGAAGATAGAGATTGTTGGGACTAATCTTTCTGCTCCAGCTCTTCCCATTCTTGCTA 676
|||||||||||||||||||||| |||||||||||||||||| |||||||| ||| ||||
Sbjct 598 TGATGAAGATAGAGATTGTTGGAACTAATCTTTCTGCTCCAACTCTTCCCCTTCCTGCTC 657
Query 677 CAGCTCAGATTCCTTTTCCTACTAATGGGATACTTGGCAACTTTAATGAGAACTTTAATG 736
|||||||| || ||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 658 CAGCTCAGTTTTCTTTTCCTACTAATGGGATACTTGGGAACTTTAATGAGAACTTTAACG 717
Query 737 GCAATTTCAATGGCAACTTCAATGGAAACTTCAGAGGCAGAGGAAGAGGCGGTTTTATGG 796
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 718 GCAATTTCAATGGGAACTTCAATGGAAACTTCAGAGGCAGAGGAAGAGGTGGTTTTATGG 777
Query 797 GGCGTCCTCGTGGTGGTGGTTTTGGCGGTGGTAATTTCAGAGGTGGCAGGGGAGCTAGAG 856
||||||||| ||||||||||||| |||||||||||| |||| || |||||||||||||
Sbjct 778 GGCGTCCTC---GTGGTGGTTTTGGGGGTGGTAATTTCCGAGGAGGTAGGGGAGCTAGAG 834
Query 857 GACGTGGTGGTCGTGGCAGTGGTGGAAGAGGACGTGATGAAAACGTATCTGCAGAGGATC 916
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 GACGTGGTGGTCGTGGCGGTGGTGGAAGAGGACGTGATGAAAACGTATCTGCAGAGGATC 894
Query 917 TTGATGCTGAATTGGACAAGTACCACAAAGAGGCAATGGAAACAAGTTAGAAAGGGGAGA 976
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 895 TTGATGCTGAATTGGACAAGTACCACAAAGAGGCAATGGAAACAAGTTAGAAAGGGCAGA 954
Query 977 TTAAACCTATTGCATGTCTACATGTATTCCTTCCTTTAGTGC-CGATATGCTTTTGTATT 1035
|||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 955 CAAAACCTATTGCATGCCTACATGTATTCCTTTCTTTAGTGCACGATATGCTTTTGTATT 1014
Query 1036 AGTATGATCTTTAGATTGAATGTCAATGGGTCTGACAttttcgagctttagcttttgttt 1095
||||||||||||||||||| |||||||||||||||| |||| || |||
Sbjct 1015 AGTATGATCTTTAGATTGA-TGTCAATGGGTCTGAC-TTTT-----TT---CTT------ 1058
Query 1096 tttcttctcttggtgagcttcttagctttttGCAGTTGAGTTCAGAGAAACAAGCATTGT 1155
|| || | | ||||||| ||||||||| ||||||||||||||||||||| |||||||
Sbjct 1059 ---CT-CTAT-G-TGAGCTTTTTAGCTTTT-GCAGTTGAGTTCAGAGAAACA-GCATTGT 1110
Query 1156 GTGTACCGTGGAACTCAAA 1174
|||||||||||||||||||
Sbjct 1111 GTGTACCGTGGAACTCAAA 1129
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45290025396
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5